Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04105

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04100 and ABIE41_RS04105 are separated by 18 nucleotidesABIE41_RS04105 and ABIE41_RS04110 are separated by 149 nucleotidesABIE41_RS04110 and ABIE41_RS04115 are separated by 131 nucleotides ABIE41_RS04100: ABIE41_RS04100 - sensor histidine kinase, at 846,110 to 847,756 _RS04100 ABIE41_RS04105: ABIE41_RS04105 - transglutaminase family protein, at 847,775 to 848,653 _RS04105 ABIE41_RS04110: ABIE41_RS04110 - hypothetical protein, at 848,803 to 849,081 _RS04110 ABIE41_RS04115: ABIE41_RS04115 - ABC transporter ATP-binding protein/permease, at 849,213 to 851,021 _RS04115 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2 3at 848.043 kb on + strand, within ABIE41_RS04105at 848.043 kb on + strand, within ABIE41_RS04105at 848.043 kb on + strand, within ABIE41_RS04105at 848.043 kb on + strand, within ABIE41_RS04105at 848.043 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.106 kb on + strand, within ABIE41_RS04105at 848.107 kb on - strand, within ABIE41_RS04105at 848.181 kb on + strand, within ABIE41_RS04105at 848.313 kb on + strand, within ABIE41_RS04105at 848.313 kb on + strand, within ABIE41_RS04105at 848.314 kb on - strand, within ABIE41_RS04105at 848.346 kb on + strand, within ABIE41_RS04105at 848.346 kb on + strand, within ABIE41_RS04105at 848.347 kb on - strand, within ABIE41_RS04105at 848.347 kb on - strand, within ABIE41_RS04105at 848.487 kb on + strand, within ABIE41_RS04105at 848.488 kb on - strand, within ABIE41_RS04105at 848.488 kb on - strand, within ABIE41_RS04105at 848.488 kb on - strand, within ABIE41_RS04105at 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.622 kb on + strandat 848.623 kb on - strandat 848.623 kb on - strandat 848.623 kb on - strandat 848.623 kb on - strandat 848.649 kb on + strandat 848.649 kb on + strandat 848.650 kb on - strandat 848.971 kb on - strand, within ABIE41_RS04110at 849.425 kb on + strand, within ABIE41_RS04115at 849.571 kb on + strand, within ABIE41_RS04115at 849.640 kb on + strand, within ABIE41_RS04115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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848,043 + ABIE41_RS04105 0.30 +1.4
848,043 + ABIE41_RS04105 0.30 -1.5
848,043 + ABIE41_RS04105 0.30 +0.1
848,043 + ABIE41_RS04105 0.30 +0.3
848,043 + ABIE41_RS04105 0.30 +1.2
848,106 + ABIE41_RS04105 0.38 -0.7
848,106 + ABIE41_RS04105 0.38 +1.9
848,106 + ABIE41_RS04105 0.38 +0.4
848,106 + ABIE41_RS04105 0.38 +2.9
848,106 + ABIE41_RS04105 0.38 +0.0
848,106 + ABIE41_RS04105 0.38 -0.0
848,106 + ABIE41_RS04105 0.38 -1.3
848,107 - ABIE41_RS04105 0.38 -0.8
848,181 + ABIE41_RS04105 0.46 +1.2
848,313 + ABIE41_RS04105 0.61 -1.6
848,313 + ABIE41_RS04105 0.61 +0.5
848,314 - ABIE41_RS04105 0.61 +0.5
848,346 + ABIE41_RS04105 0.65 +1.3
848,346 + ABIE41_RS04105 0.65 -1.4
848,347 - ABIE41_RS04105 0.65 +1.3
848,347 - ABIE41_RS04105 0.65 +0.6
848,487 + ABIE41_RS04105 0.81 -0.3
848,488 - ABIE41_RS04105 0.81 -0.8
848,488 - ABIE41_RS04105 0.81 -0.3
848,488 - ABIE41_RS04105 0.81 -0.4
848,622 + +1.5
848,622 + -0.3
848,622 + +0.0
848,622 + +0.7
848,622 + -0.3
848,622 + +0.3
848,622 + +0.2
848,622 + +0.7
848,623 - +0.6
848,623 - -0.2
848,623 - -0.1
848,623 - -2.0
848,649 + -0.0
848,649 + +0.7
848,650 - +1.7
848,971 - ABIE41_RS04110 0.60 +0.9
849,425 + ABIE41_RS04115 0.12 +1.8
849,571 + ABIE41_RS04115 0.20 -0.4
849,640 + ABIE41_RS04115 0.24 -0.1

Or see this region's nucleotide sequence