Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02030

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02025 and ABIE41_RS02030 are separated by 71 nucleotidesABIE41_RS02030 and ABIE41_RS02035 are separated by 122 nucleotidesABIE41_RS02035 and ABIE41_RS02040 are separated by 167 nucleotidesABIE41_RS02040 and ABIE41_RS02045 overlap by 30 nucleotides ABIE41_RS02025: ABIE41_RS02025 - LysR family transcriptional regulator, at 402,482 to 403,384 _RS02025 ABIE41_RS02030: ABIE41_RS02030 - class I SAM-dependent methyltransferase, at 403,456 to 404,127 _RS02030 ABIE41_RS02035: ABIE41_RS02035 - hypothetical protein, at 404,250 to 404,666 _RS02035 ABIE41_RS02040: ABIE41_RS02040 - tRNA-Arg, at 404,834 to 404,910 _RS02040 ABIE41_RS02045: ABIE41_RS02045 - recombinase family protein, at 404,881 to 406,548 _RS02045 Position (kb) 403 404 405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 402.484 kb on - strandat 402.484 kb on - strandat 402.540 kb on + strandat 402.540 kb on + strandat 402.540 kb on + strandat 402.541 kb on - strandat 402.627 kb on - strand, within ABIE41_RS02025at 402.661 kb on + strand, within ABIE41_RS02025at 402.661 kb on + strand, within ABIE41_RS02025at 402.661 kb on + strand, within ABIE41_RS02025at 402.662 kb on - strand, within ABIE41_RS02025at 402.882 kb on + strand, within ABIE41_RS02025at 402.882 kb on + strand, within ABIE41_RS02025at 402.882 kb on + strand, within ABIE41_RS02025at 402.882 kb on + strand, within ABIE41_RS02025at 402.882 kb on + strand, within ABIE41_RS02025at 402.883 kb on - strand, within ABIE41_RS02025at 402.883 kb on - strand, within ABIE41_RS02025at 402.883 kb on - strand, within ABIE41_RS02025at 402.883 kb on - strand, within ABIE41_RS02025at 402.883 kb on - strand, within ABIE41_RS02025at 403.396 kb on + strandat 403.437 kb on + strandat 403.437 kb on + strandat 403.438 kb on - strandat 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.534 kb on + strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.535 kb on - strand, within ABIE41_RS02030at 403.567 kb on + strand, within ABIE41_RS02030at 403.680 kb on + strand, within ABIE41_RS02030at 403.681 kb on - strand, within ABIE41_RS02030at 403.681 kb on - strand, within ABIE41_RS02030at 403.681 kb on - strand, within ABIE41_RS02030at 403.681 kb on - strand, within ABIE41_RS02030at 403.974 kb on + strand, within ABIE41_RS02030at 404.631 kb on + strandat 404.632 kb on - strandat 404.935 kb on + strandat 404.935 kb on + strandat 404.935 kb on + strandat 404.935 kb on + strandat 404.935 kb on + strandat 404.935 kb on + strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 404.936 kb on - strandat 405.044 kb on + strandat 405.044 kb on + strandat 405.045 kb on - strandat 405.045 kb on - strandat 405.045 kb on - strandat 405.045 kb on - strandat 405.045 kb on - strandat 405.045 kb on - strandat 405.112 kb on - strand, within ABIE41_RS02045at 405.112 kb on - strand, within ABIE41_RS02045at 405.112 kb on - strand, within ABIE41_RS02045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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402,484 - +0.9
402,484 - -0.1
402,540 + +1.1
402,540 + +0.9
402,540 + +1.3
402,541 - -0.4
402,627 - ABIE41_RS02025 0.16 +1.6
402,661 + ABIE41_RS02025 0.20 +0.3
402,661 + ABIE41_RS02025 0.20 -0.5
402,661 + ABIE41_RS02025 0.20 +1.1
402,662 - ABIE41_RS02025 0.20 -1.8
402,882 + ABIE41_RS02025 0.44 +0.1
402,882 + ABIE41_RS02025 0.44 +0.6
402,882 + ABIE41_RS02025 0.44 -2.7
402,882 + ABIE41_RS02025 0.44 -0.1
402,882 + ABIE41_RS02025 0.44 +0.8
402,883 - ABIE41_RS02025 0.44 -2.3
402,883 - ABIE41_RS02025 0.44 +0.0
402,883 - ABIE41_RS02025 0.44 -1.0
402,883 - ABIE41_RS02025 0.44 +0.4
402,883 - ABIE41_RS02025 0.44 -0.3
403,396 + +0.2
403,437 + -0.8
403,437 + +1.6
403,438 - -0.3
403,534 + ABIE41_RS02030 0.12 -0.4
403,534 + ABIE41_RS02030 0.12 -0.2
403,534 + ABIE41_RS02030 0.12 -0.3
403,534 + ABIE41_RS02030 0.12 -0.3
403,534 + ABIE41_RS02030 0.12 -0.1
403,534 + ABIE41_RS02030 0.12 -0.1
403,534 + ABIE41_RS02030 0.12 -1.4
403,535 - ABIE41_RS02030 0.12 -0.0
403,535 - ABIE41_RS02030 0.12 -1.1
403,535 - ABIE41_RS02030 0.12 -0.2
403,535 - ABIE41_RS02030 0.12 -1.5
403,535 - ABIE41_RS02030 0.12 -0.5
403,535 - ABIE41_RS02030 0.12 +0.3
403,567 + ABIE41_RS02030 0.17 -0.2
403,680 + ABIE41_RS02030 0.33 -1.2
403,681 - ABIE41_RS02030 0.33 -1.4
403,681 - ABIE41_RS02030 0.33 -0.7
403,681 - ABIE41_RS02030 0.33 -0.1
403,681 - ABIE41_RS02030 0.33 -0.1
403,974 + ABIE41_RS02030 0.77 -3.5
404,631 + -2.5
404,632 - +0.1
404,935 + -0.8
404,935 + +0.4
404,935 + +0.2
404,935 + +0.2
404,935 + -2.5
404,935 + +0.2
404,936 - -1.1
404,936 - +0.5
404,936 - +0.8
404,936 - -1.9
404,936 - -0.8
404,936 - +1.4
404,936 - +0.2
404,936 - +0.7
405,044 + -3.5
405,044 + +2.1
405,045 - -1.5
405,045 - -0.3
405,045 - +0.4
405,045 - -3.0
405,045 - -3.8
405,045 - +1.3
405,112 - ABIE41_RS02045 0.14 +1.9
405,112 - ABIE41_RS02045 0.14 +0.0
405,112 - ABIE41_RS02045 0.14 +1.0

Or see this region's nucleotide sequence