Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01570

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01560 and ABIE41_RS01565 are separated by 5 nucleotidesABIE41_RS01565 and ABIE41_RS01570 overlap by 4 nucleotidesABIE41_RS01570 and ABIE41_RS01575 overlap by 4 nucleotides ABIE41_RS01560: ABIE41_RS01560 - FAD-dependent oxidoreductase, at 310,824 to 311,957 _RS01560 ABIE41_RS01565: ABIE41_RS01565 - ABC transporter permease, at 311,963 to 312,763 _RS01565 ABIE41_RS01570: ABIE41_RS01570 - ABC transporter permease, at 312,760 to 313,626 _RS01570 ABIE41_RS01575: ABIE41_RS01575 - ABC transporter ATP-binding protein, at 313,623 to 314,666 _RS01575 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 312.083 kb on - strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.495 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.780 kb on - strandat 312.893 kb on + strand, within ABIE41_RS01570at 312.893 kb on + strand, within ABIE41_RS01570at 312.894 kb on - strand, within ABIE41_RS01570at 313.350 kb on + strand, within ABIE41_RS01570at 313.351 kb on - strand, within ABIE41_RS01570at 313.351 kb on - strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.437 kb on - strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.511 kb on + strand, within ABIE41_RS01570at 313.511 kb on + strand, within ABIE41_RS01570at 313.512 kb on - strand, within ABIE41_RS01570at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.002 kb on + strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.003 kb on - strand, within ABIE41_RS01575at 314.327 kb on + strand, within ABIE41_RS01575at 314.327 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575at 314.416 kb on + strand, within ABIE41_RS01575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
312,083 - ABIE41_RS01565 0.15 -3.6
312,096 + ABIE41_RS01565 0.17 -1.1
312,096 + ABIE41_RS01565 0.17 -0.8
312,097 - ABIE41_RS01565 0.17 +0.8
312,097 - ABIE41_RS01565 0.17 -0.3
312,304 - ABIE41_RS01565 0.43 -1.2
312,304 - ABIE41_RS01565 0.43 +0.7
312,495 + ABIE41_RS01565 0.66 -0.7
312,600 + ABIE41_RS01565 0.80 -0.1
312,600 + ABIE41_RS01565 0.80 -1.4
312,657 + ABIE41_RS01565 0.87 +0.3
312,657 + ABIE41_RS01565 0.87 +0.0
312,657 + ABIE41_RS01565 0.87 +1.0
312,658 - ABIE41_RS01565 0.87 +0.2
312,658 - ABIE41_RS01565 0.87 -0.7
312,658 - ABIE41_RS01565 0.87 -0.5
312,658 - ABIE41_RS01565 0.87 +0.9
312,780 - +1.4
312,893 + ABIE41_RS01570 0.15 +0.8
312,893 + ABIE41_RS01570 0.15 +1.4
312,894 - ABIE41_RS01570 0.15 -2.4
313,350 + ABIE41_RS01570 0.68 -1.2
313,351 - ABIE41_RS01570 0.68 +0.6
313,351 - ABIE41_RS01570 0.68 -2.9
313,352 + ABIE41_RS01570 0.68 -2.0
313,352 + ABIE41_RS01570 0.68 -0.5
313,352 + ABIE41_RS01570 0.68 -1.2
313,352 + ABIE41_RS01570 0.68 +1.3
313,352 + ABIE41_RS01570 0.68 +0.2
313,352 + ABIE41_RS01570 0.68 +1.9
313,352 + ABIE41_RS01570 0.68 -0.9
313,352 + ABIE41_RS01570 0.68 +1.6
313,352 + ABIE41_RS01570 0.68 -1.4
313,352 + ABIE41_RS01570 0.68 +0.1
313,352 + ABIE41_RS01570 0.68 -0.7
313,353 - ABIE41_RS01570 0.68 +0.5
313,353 - ABIE41_RS01570 0.68 -2.1
313,353 - ABIE41_RS01570 0.68 +1.1
313,353 - ABIE41_RS01570 0.68 -0.1
313,353 - ABIE41_RS01570 0.68 -0.7
313,353 - ABIE41_RS01570 0.68 -2.5
313,353 - ABIE41_RS01570 0.68 +1.9
313,353 - ABIE41_RS01570 0.68 -0.8
313,353 - ABIE41_RS01570 0.68 -0.9
313,353 - ABIE41_RS01570 0.68 +1.0
313,436 + ABIE41_RS01570 0.78 +0.8
313,436 + ABIE41_RS01570 0.78 +1.0
313,436 + ABIE41_RS01570 0.78 -1.4
313,437 - ABIE41_RS01570 0.78 -0.4
313,496 + ABIE41_RS01570 0.85 +1.7
313,496 + ABIE41_RS01570 0.85 +0.1
313,496 + ABIE41_RS01570 0.85 -0.8
313,496 + ABIE41_RS01570 0.85 -0.1
313,497 - ABIE41_RS01570 0.85 +0.1
313,497 - ABIE41_RS01570 0.85 +0.3
313,497 - ABIE41_RS01570 0.85 +0.4
313,511 + ABIE41_RS01570 0.87 -0.9
313,511 + ABIE41_RS01570 0.87 +2.2
313,512 - ABIE41_RS01570 0.87 -1.9
314,002 + ABIE41_RS01575 0.36 -0.4
314,002 + ABIE41_RS01575 0.36 -0.1
314,002 + ABIE41_RS01575 0.36 -0.7
314,002 + ABIE41_RS01575 0.36 +0.8
314,002 + ABIE41_RS01575 0.36 +0.3
314,002 + ABIE41_RS01575 0.36 +1.5
314,003 - ABIE41_RS01575 0.36 -2.1
314,003 - ABIE41_RS01575 0.36 +0.8
314,003 - ABIE41_RS01575 0.36 -0.4
314,003 - ABIE41_RS01575 0.36 -1.8
314,003 - ABIE41_RS01575 0.36 +1.8
314,003 - ABIE41_RS01575 0.36 -0.7
314,003 - ABIE41_RS01575 0.36 +0.5
314,003 - ABIE41_RS01575 0.36 +0.2
314,327 + ABIE41_RS01575 0.67 -0.5
314,327 + ABIE41_RS01575 0.67 -0.7
314,416 + ABIE41_RS01575 0.76 -0.4
314,416 + ABIE41_RS01575 0.76 -0.3
314,416 + ABIE41_RS01575 0.76 +0.2
314,416 + ABIE41_RS01575 0.76 -0.3
314,416 + ABIE41_RS01575 0.76 -1.3
314,416 + ABIE41_RS01575 0.76 +1.2
314,416 + ABIE41_RS01575 0.76 +0.7
314,416 + ABIE41_RS01575 0.76 -1.4
314,416 + ABIE41_RS01575 0.76 -0.6

Or see this region's nucleotide sequence