Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01955 and ABIE40_RS01960 are separated by 55 nucleotides ABIE40_RS01960 and ABIE40_RS01965 overlap by 4 nucleotides ABIE40_RS01965 and ABIE40_RS01970 are separated by 7 nucleotides
ABIE40_RS01955: ABIE40_RS01955 - magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase, at 384,717 to 386,240
_RS01955
ABIE40_RS01960: ABIE40_RS01960 - trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase, at 386,296 to 387,375
_RS01960
ABIE40_RS01965: ABIE40_RS01965 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 387,372 to 388,145
_RS01965
ABIE40_RS01970: ABIE40_RS01970 - acetylglutamate kinase, at 388,153 to 389,040
_RS01970
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.335 kb on + strand, within ABIE40_RS01955 at 385.336 kb on - strand, within ABIE40_RS01955 at 385.336 kb on - strand, within ABIE40_RS01955 at 385.413 kb on + strand, within ABIE40_RS01955 at 385.629 kb on - strand, within ABIE40_RS01955 at 385.800 kb on + strand, within ABIE40_RS01955 at 385.827 kb on + strand, within ABIE40_RS01955 at 385.827 kb on + strand, within ABIE40_RS01955 at 385.827 kb on + strand, within ABIE40_RS01955 at 385.827 kb on + strand, within ABIE40_RS01955 at 385.827 kb on + strand, within ABIE40_RS01955 at 385.828 kb on - strand, within ABIE40_RS01955 at 385.828 kb on - strand, within ABIE40_RS01955 at 385.828 kb on - strand, within ABIE40_RS01955 at 385.911 kb on + strand, within ABIE40_RS01955 at 385.911 kb on + strand, within ABIE40_RS01955 at 385.912 kb on - strand, within ABIE40_RS01955 at 386.064 kb on + strand, within ABIE40_RS01955 at 386.064 kb on + strand, within ABIE40_RS01955 at 386.064 kb on + strand, within ABIE40_RS01955 at 386.064 kb on + strand, within ABIE40_RS01955 at 386.065 kb on - strand, within ABIE40_RS01955 at 386.067 kb on - strand, within ABIE40_RS01955 at 386.067 kb on - strand, within ABIE40_RS01955 at 386.067 kb on - strand, within ABIE40_RS01955 at 386.067 kb on - strand, within ABIE40_RS01955 at 386.067 kb on - strand, within ABIE40_RS01955 at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.133 kb on - strand at 386.133 kb on - strand at 386.133 kb on - strand at 386.133 kb on - strand at 386.133 kb on - strand at 386.238 kb on + strand at 386.243 kb on + strand at 386.243 kb on + strand at 386.284 kb on + strand at 386.285 kb on - strand at 386.285 kb on - strand at 386.285 kb on - strand at 386.329 kb on + strand at 386.330 kb on - strand at 386.330 kb on - strand at 386.330 kb on - strand at 386.330 kb on - strand at 386.330 kb on - strand at 386.360 kb on - strand at 386.374 kb on + strand at 386.374 kb on + strand at 386.375 kb on - strand at 386.445 kb on + strand, within ABIE40_RS01960 at 386.445 kb on + strand, within ABIE40_RS01960 at 386.445 kb on + strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.446 kb on - strand, within ABIE40_RS01960 at 386.455 kb on + strand, within ABIE40_RS01960 at 386.455 kb on + strand, within ABIE40_RS01960 at 386.455 kb on + strand, within ABIE40_RS01960 at 386.456 kb on - strand, within ABIE40_RS01960 at 386.456 kb on - strand, within ABIE40_RS01960 at 386.456 kb on - strand, within ABIE40_RS01960 at 386.456 kb on - strand, within ABIE40_RS01960 at 386.762 kb on - strand, within ABIE40_RS01960 at 386.863 kb on - strand, within ABIE40_RS01960 at 387.017 kb on + strand, within ABIE40_RS01960 at 387.017 kb on + strand, within ABIE40_RS01960 at 387.018 kb on - strand, within ABIE40_RS01960 at 387.155 kb on - strand, within ABIE40_RS01960 at 387.438 kb on + strand at 387.438 kb on + strand at 387.438 kb on + strand at 387.443 kb on + strand at 387.443 kb on + strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.444 kb on - strand at 387.534 kb on + strand, within ABIE40_RS01965 at 387.534 kb on + strand, within ABIE40_RS01965 at 387.534 kb on + strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.535 kb on - strand, within ABIE40_RS01965 at 387.889 kb on + strand, within ABIE40_RS01965 at 387.899 kb on + strand, within ABIE40_RS01965 at 387.906 kb on + strand, within ABIE40_RS01965 at 387.907 kb on - strand, within ABIE40_RS01965 at 387.907 kb on - strand, within ABIE40_RS01965 at 387.937 kb on + strand, within ABIE40_RS01965 at 387.938 kb on - strand, within ABIE40_RS01965 at 387.938 kb on - strand, within ABIE40_RS01965 at 388.007 kb on + strand, within ABIE40_RS01965 at 388.008 kb on - strand, within ABIE40_RS01965 at 388.008 kb on - strand, within ABIE40_RS01965 at 388.061 kb on + strand, within ABIE40_RS01965 at 388.068 kb on + strand at 388.068 kb on + strand at 388.069 kb on - strand at 388.083 kb on + strand at 388.128 kb on + strand at 388.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 385,335 + ABIE40_RS01955 0.41 -1.9 385,335 + ABIE40_RS01955 0.41 -0.2 385,335 + ABIE40_RS01955 0.41 +0.7 385,335 + ABIE40_RS01955 0.41 -1.1 385,335 + ABIE40_RS01955 0.41 -1.2 385,336 - ABIE40_RS01955 0.41 -0.9 385,336 - ABIE40_RS01955 0.41 -0.5 385,413 + ABIE40_RS01955 0.46 -0.8 385,629 - ABIE40_RS01955 0.60 -0.1 385,800 + ABIE40_RS01955 0.71 +0.6 385,827 + ABIE40_RS01955 0.73 -2.0 385,827 + ABIE40_RS01955 0.73 -0.3 385,827 + ABIE40_RS01955 0.73 -1.7 385,827 + ABIE40_RS01955 0.73 -0.1 385,827 + ABIE40_RS01955 0.73 +0.4 385,828 - ABIE40_RS01955 0.73 -0.1 385,828 - ABIE40_RS01955 0.73 -0.1 385,828 - ABIE40_RS01955 0.73 -0.9 385,911 + ABIE40_RS01955 0.78 -0.1 385,911 + ABIE40_RS01955 0.78 -0.1 385,912 - ABIE40_RS01955 0.78 -0.7 386,064 + ABIE40_RS01955 0.88 -0.3 386,064 + ABIE40_RS01955 0.88 +1.7 386,064 + ABIE40_RS01955 0.88 +0.4 386,064 + ABIE40_RS01955 0.88 -0.1 386,065 - ABIE40_RS01955 0.88 -0.5 386,067 - ABIE40_RS01955 0.89 -2.1 386,067 - ABIE40_RS01955 0.89 +0.5 386,067 - ABIE40_RS01955 0.89 -1.1 386,067 - ABIE40_RS01955 0.89 -0.4 386,067 - ABIE40_RS01955 0.89 -1.7 386,101 + -1.2 386,101 + -1.2 386,101 + -0.8 386,101 + -1.6 386,133 - +0.4 386,133 - +1.2 386,133 - -2.0 386,133 - +0.1 386,133 - -1.9 386,238 + +0.1 386,243 + +0.2 386,243 + -1.0 386,284 + +1.0 386,285 - +0.5 386,285 - +0.3 386,285 - +0.1 386,329 + +0.4 386,330 - +0.9 386,330 - -0.3 386,330 - -1.5 386,330 - +0.7 386,330 - +0.4 386,360 - +0.2 386,374 + +0.6 386,374 + -1.1 386,375 - -2.1 386,445 + ABIE40_RS01960 0.14 -0.7 386,445 + ABIE40_RS01960 0.14 +0.3 386,445 + ABIE40_RS01960 0.14 -0.1 386,446 - ABIE40_RS01960 0.14 +2.2 386,446 - ABIE40_RS01960 0.14 +0.1 386,446 - ABIE40_RS01960 0.14 +0.6 386,446 - ABIE40_RS01960 0.14 +1.1 386,446 - ABIE40_RS01960 0.14 +0.5 386,446 - ABIE40_RS01960 0.14 -0.9 386,455 + ABIE40_RS01960 0.15 -0.8 386,455 + ABIE40_RS01960 0.15 -0.5 386,455 + ABIE40_RS01960 0.15 -0.1 386,456 - ABIE40_RS01960 0.15 -1.1 386,456 - ABIE40_RS01960 0.15 +1.5 386,456 - ABIE40_RS01960 0.15 -2.1 386,456 - ABIE40_RS01960 0.15 -1.0 386,762 - ABIE40_RS01960 0.43 +0.9 386,863 - ABIE40_RS01960 0.53 -1.2 387,017 + ABIE40_RS01960 0.67 +0.4 387,017 + ABIE40_RS01960 0.67 +1.7 387,018 - ABIE40_RS01960 0.67 -0.2 387,155 - ABIE40_RS01960 0.80 +0.7 387,438 + -0.5 387,438 + -1.2 387,438 + -0.6 387,443 + -0.4 387,443 + +0.3 387,444 - -0.9 387,444 - +0.5 387,444 - +0.6 387,444 - +0.5 387,444 - -0.7 387,534 + ABIE40_RS01965 0.21 -0.9 387,534 + ABIE40_RS01965 0.21 +0.3 387,534 + ABIE40_RS01965 0.21 -0.0 387,535 - ABIE40_RS01965 0.21 +0.2 387,535 - ABIE40_RS01965 0.21 +0.5 387,535 - ABIE40_RS01965 0.21 +0.3 387,889 + ABIE40_RS01965 0.67 +0.2 387,899 + ABIE40_RS01965 0.68 -0.6 387,906 + ABIE40_RS01965 0.69 -0.8 387,907 - ABIE40_RS01965 0.69 +0.2 387,907 - ABIE40_RS01965 0.69 -0.6 387,937 + ABIE40_RS01965 0.73 +0.3 387,938 - ABIE40_RS01965 0.73 +0.4 387,938 - ABIE40_RS01965 0.73 -1.0 388,007 + ABIE40_RS01965 0.82 -1.6 388,008 - ABIE40_RS01965 0.82 -0.4 388,008 - ABIE40_RS01965 0.82 +0.5 388,061 + ABIE40_RS01965 0.89 +0.8 388,068 + +0.4 388,068 + -0.7 388,069 - -0.9 388,083 + -0.9 388,128 + +1.9 388,128 + -0.2
Or see this region's nucleotide sequence