Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22130

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22125 and ABID97_RS22130 are separated by 175 nucleotidesABID97_RS22130 and ABID97_RS22135 are separated by 53 nucleotides ABID97_RS22125: ABID97_RS22125 - xanthine dehydrogenase small subunit, at 4,580,940 to 4,582,583 _RS22125 ABID97_RS22130: ABID97_RS22130 - divalent metal cation transporter, at 4,582,759 to 4,584,012 _RS22130 ABID97_RS22135: ABID97_RS22135 - LysR family transcriptional regulator, at 4,584,066 to 4,584,980 _RS22135 Position (kb) 4582 4583 4584 4585Strain fitness (log2 ratio) -1 0 1at 4582.022 kb on - strand, within ABID97_RS22125at 4582.109 kb on - strand, within ABID97_RS22125at 4582.864 kb on + strandat 4582.864 kb on + strandat 4582.864 kb on + strandat 4582.943 kb on + strand, within ABID97_RS22130at 4583.019 kb on - strand, within ABID97_RS22130at 4583.088 kb on - strand, within ABID97_RS22130at 4583.550 kb on - strand, within ABID97_RS22130at 4583.652 kb on - strand, within ABID97_RS22130at 4583.921 kb on + strandat 4583.922 kb on - strandat 4584.377 kb on - strand, within ABID97_RS22135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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4,582,022 - ABID97_RS22125 0.66 +0.8
4,582,109 - ABID97_RS22125 0.71 +0.7
4,582,864 + +0.0
4,582,864 + -1.4
4,582,864 + +1.6
4,582,943 + ABID97_RS22130 0.15 -1.0
4,583,019 - ABID97_RS22130 0.21 -0.1
4,583,088 - ABID97_RS22130 0.26 -0.2
4,583,550 - ABID97_RS22130 0.63 -1.2
4,583,652 - ABID97_RS22130 0.71 -0.3
4,583,921 + -0.2
4,583,922 - -0.3
4,584,377 - ABID97_RS22135 0.34 -0.4

Or see this region's nucleotide sequence