Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13500

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13490 and ABID97_RS13495 are separated by 80 nucleotidesABID97_RS13495 and ABID97_RS13500 are separated by 49 nucleotidesABID97_RS13500 and ABID97_RS13505 overlap by 4 nucleotides ABID97_RS13490: ABID97_RS13490 - dihydrodipicolinate synthase family protein, at 2,807,733 to 2,808,752 _RS13490 ABID97_RS13495: ABID97_RS13495 - tripartite tricarboxylate transporter substrate binding protein, at 2,808,833 to 2,809,486 _RS13495 ABID97_RS13500: ABID97_RS13500 - tripartite tricarboxylate transporter substrate-binding protein, at 2,809,536 to 2,809,748 _RS13500 ABID97_RS13505: ABID97_RS13505 - ornithine cyclodeaminase family protein, at 2,809,745 to 2,810,788 _RS13505 Position (kb) 2809 2810Strain fitness (log2 ratio) -1 0 1at 2808.547 kb on - strand, within ABID97_RS13490at 2809.151 kb on + strand, within ABID97_RS13495at 2809.244 kb on + strand, within ABID97_RS13495at 2809.244 kb on + strand, within ABID97_RS13495at 2809.244 kb on + strand, within ABID97_RS13495at 2809.707 kb on + strand, within ABID97_RS13500at 2809.868 kb on + strand, within ABID97_RS13505at 2809.979 kb on + strand, within ABID97_RS13505at 2809.979 kb on + strand, within ABID97_RS13505at 2810.206 kb on + strand, within ABID97_RS13505at 2810.206 kb on + strand, within ABID97_RS13505at 2810.207 kb on - strand, within ABID97_RS13505at 2810.666 kb on + strand, within ABID97_RS13505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,808,547 - ABID97_RS13490 0.80 +0.2
2,809,151 + ABID97_RS13495 0.49 +0.2
2,809,244 + ABID97_RS13495 0.63 -0.0
2,809,244 + ABID97_RS13495 0.63 -0.0
2,809,244 + ABID97_RS13495 0.63 -0.2
2,809,707 + ABID97_RS13500 0.80 -0.1
2,809,868 + ABID97_RS13505 0.12 +0.6
2,809,979 + ABID97_RS13505 0.22 +0.5
2,809,979 + ABID97_RS13505 0.22 +1.1
2,810,206 + ABID97_RS13505 0.44 -0.6
2,810,206 + ABID97_RS13505 0.44 +1.7
2,810,207 - ABID97_RS13505 0.44 +0.2
2,810,666 + ABID97_RS13505 0.88 +0.7

Or see this region's nucleotide sequence