Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13490 and ABID97_RS13495 are separated by 80 nucleotides ABID97_RS13495 and ABID97_RS13500 are separated by 49 nucleotides ABID97_RS13500 and ABID97_RS13505 overlap by 4 nucleotides
ABID97_RS13490: ABID97_RS13490 - dihydrodipicolinate synthase family protein, at 2,807,733 to 2,808,752
_RS13490
ABID97_RS13495: ABID97_RS13495 - tripartite tricarboxylate transporter substrate binding protein, at 2,808,833 to 2,809,486
_RS13495
ABID97_RS13500: ABID97_RS13500 - tripartite tricarboxylate transporter substrate-binding protein, at 2,809,536 to 2,809,748
_RS13500
ABID97_RS13505: ABID97_RS13505 - ornithine cyclodeaminase family protein, at 2,809,745 to 2,810,788
_RS13505
Position (kb)
2809
2810 Strain fitness (log2 ratio)
-1
0
1 at 2808.547 kb on - strand, within ABID97_RS13490 at 2809.151 kb on + strand, within ABID97_RS13495 at 2809.244 kb on + strand, within ABID97_RS13495 at 2809.244 kb on + strand, within ABID97_RS13495 at 2809.244 kb on + strand, within ABID97_RS13495 at 2809.707 kb on + strand, within ABID97_RS13500 at 2809.868 kb on + strand, within ABID97_RS13505 at 2809.979 kb on + strand, within ABID97_RS13505 at 2809.979 kb on + strand, within ABID97_RS13505 at 2810.206 kb on + strand, within ABID97_RS13505 at 2810.206 kb on + strand, within ABID97_RS13505 at 2810.207 kb on - strand, within ABID97_RS13505 at 2810.666 kb on + strand, within ABID97_RS13505
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,808,547 - ABID97_RS13490 0.80 +0.2 2,809,151 + ABID97_RS13495 0.49 +0.2 2,809,244 + ABID97_RS13495 0.63 -0.0 2,809,244 + ABID97_RS13495 0.63 -0.0 2,809,244 + ABID97_RS13495 0.63 -0.2 2,809,707 + ABID97_RS13500 0.80 -0.1 2,809,868 + ABID97_RS13505 0.12 +0.6 2,809,979 + ABID97_RS13505 0.22 +0.5 2,809,979 + ABID97_RS13505 0.22 +1.1 2,810,206 + ABID97_RS13505 0.44 -0.6 2,810,206 + ABID97_RS13505 0.44 +1.7 2,810,207 - ABID97_RS13505 0.44 +0.2 2,810,666 + ABID97_RS13505 0.88 +0.7
Or see this region's nucleotide sequence