Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13110

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13105 and ABID97_RS13110 are separated by 23 nucleotidesABID97_RS13110 and ABID97_RS13115 are separated by 47 nucleotides ABID97_RS13105: ABID97_RS13105 - quinone oxidoreductase, at 2,729,393 to 2,730,364 _RS13105 ABID97_RS13110: ABID97_RS13110 - tripartite tricarboxylate transporter substrate binding protein, at 2,730,388 to 2,731,359 _RS13110 ABID97_RS13115: ABID97_RS13115 - tripartite tricarboxylate transporter substrate binding protein, at 2,731,407 to 2,732,399 _RS13115 Position (kb) 2730 2731 2732Strain fitness (log2 ratio) -2 -1 0 1at 2729.565 kb on + strand, within ABID97_RS13105at 2729.565 kb on + strand, within ABID97_RS13105at 2729.566 kb on - strand, within ABID97_RS13105at 2729.728 kb on - strand, within ABID97_RS13105at 2730.084 kb on + strand, within ABID97_RS13105at 2730.085 kb on - strand, within ABID97_RS13105at 2730.228 kb on + strand, within ABID97_RS13105at 2730.890 kb on + strand, within ABID97_RS13110at 2730.890 kb on + strand, within ABID97_RS13110at 2731.127 kb on + strand, within ABID97_RS13110at 2731.918 kb on + strand, within ABID97_RS13115at 2731.919 kb on - strand, within ABID97_RS13115at 2732.068 kb on + strand, within ABID97_RS13115at 2732.068 kb on + strand, within ABID97_RS13115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,729,565 + ABID97_RS13105 0.18 -0.6
2,729,565 + ABID97_RS13105 0.18 -1.3
2,729,566 - ABID97_RS13105 0.18 -0.5
2,729,728 - ABID97_RS13105 0.34 -0.3
2,730,084 + ABID97_RS13105 0.71 -0.1
2,730,085 - ABID97_RS13105 0.71 +0.1
2,730,228 + ABID97_RS13105 0.86 -0.6
2,730,890 + ABID97_RS13110 0.52 -1.8
2,730,890 + ABID97_RS13110 0.52 -1.2
2,731,127 + ABID97_RS13110 0.76 +0.2
2,731,918 + ABID97_RS13115 0.51 -1.1
2,731,919 - ABID97_RS13115 0.52 +0.1
2,732,068 + ABID97_RS13115 0.67 -0.3
2,732,068 + ABID97_RS13115 0.67 +0.0

Or see this region's nucleotide sequence