Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13105 and ABID97_RS13110 are separated by 23 nucleotides ABID97_RS13110 and ABID97_RS13115 are separated by 47 nucleotides
ABID97_RS13105: ABID97_RS13105 - quinone oxidoreductase, at 2,729,393 to 2,730,364
_RS13105
ABID97_RS13110: ABID97_RS13110 - tripartite tricarboxylate transporter substrate binding protein, at 2,730,388 to 2,731,359
_RS13110
ABID97_RS13115: ABID97_RS13115 - tripartite tricarboxylate transporter substrate binding protein, at 2,731,407 to 2,732,399
_RS13115
Position (kb)
2730
2731
2732 Strain fitness (log2 ratio)
-2
-1
0
1 at 2729.565 kb on + strand, within ABID97_RS13105 at 2729.565 kb on + strand, within ABID97_RS13105 at 2729.566 kb on - strand, within ABID97_RS13105 at 2729.728 kb on - strand, within ABID97_RS13105 at 2730.084 kb on + strand, within ABID97_RS13105 at 2730.085 kb on - strand, within ABID97_RS13105 at 2730.228 kb on + strand, within ABID97_RS13105 at 2730.890 kb on + strand, within ABID97_RS13110 at 2730.890 kb on + strand, within ABID97_RS13110 at 2731.127 kb on + strand, within ABID97_RS13110 at 2731.918 kb on + strand, within ABID97_RS13115 at 2731.919 kb on - strand, within ABID97_RS13115 at 2732.068 kb on + strand, within ABID97_RS13115 at 2732.068 kb on + strand, within ABID97_RS13115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,729,565 + ABID97_RS13105 0.18 -0.6 2,729,565 + ABID97_RS13105 0.18 -1.3 2,729,566 - ABID97_RS13105 0.18 -0.5 2,729,728 - ABID97_RS13105 0.34 -0.3 2,730,084 + ABID97_RS13105 0.71 -0.1 2,730,085 - ABID97_RS13105 0.71 +0.1 2,730,228 + ABID97_RS13105 0.86 -0.6 2,730,890 + ABID97_RS13110 0.52 -1.8 2,730,890 + ABID97_RS13110 0.52 -1.2 2,731,127 + ABID97_RS13110 0.76 +0.2 2,731,918 + ABID97_RS13115 0.51 -1.1 2,731,919 - ABID97_RS13115 0.52 +0.1 2,732,068 + ABID97_RS13115 0.67 -0.3 2,732,068 + ABID97_RS13115 0.67 +0.0
Or see this region's nucleotide sequence