Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03985

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03980 and ABID97_RS03985 are separated by 179 nucleotidesABID97_RS03985 and ABID97_RS03990 are separated by 13 nucleotidesABID97_RS03990 and ABID97_RS03995 are separated by 50 nucleotidesABID97_RS03995 and ABID97_RS04000 are separated by 14 nucleotides ABID97_RS03980: ABID97_RS03980 - IclR family transcriptional regulator, at 816,733 to 817,626 _RS03980 ABID97_RS03985: ABID97_RS03985 - hypothetical protein, at 817,806 to 818,870 _RS03985 ABID97_RS03990: ABID97_RS03990 - hypothetical protein, at 818,884 to 819,105 _RS03990 ABID97_RS03995: ABID97_RS03995 - ABC-type transport auxiliary lipoprotein family protein, at 819,156 to 819,827 _RS03995 ABID97_RS04000: ABID97_RS04000 - MlaD family protein, at 819,842 to 820,813 _RS04000 Position (kb) 817 818 819Strain fitness (log2 ratio) -2 -1 0 1 2at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.919 kb on + strand, within ABID97_RS03980at 816.920 kb on - strand, within ABID97_RS03980at 816.920 kb on - strand, within ABID97_RS03980at 816.920 kb on - strand, within ABID97_RS03980at 816.920 kb on - strand, within ABID97_RS03980at 816.977 kb on - strand, within ABID97_RS03980at 817.228 kb on + strand, within ABID97_RS03980at 817.229 kb on - strand, within ABID97_RS03980at 817.229 kb on - strand, within ABID97_RS03980at 817.229 kb on - strand, within ABID97_RS03980at 818.131 kb on - strand, within ABID97_RS03985at 818.473 kb on + strand, within ABID97_RS03985at 818.649 kb on + strand, within ABID97_RS03985at 818.649 kb on + strand, within ABID97_RS03985at 818.650 kb on - strand, within ABID97_RS03985at 818.650 kb on - strand, within ABID97_RS03985at 818.760 kb on + strand, within ABID97_RS03985at 818.760 kb on + strand, within ABID97_RS03985at 818.760 kb on + strand, within ABID97_RS03985at 818.760 kb on + strand, within ABID97_RS03985at 818.760 kb on + strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 818.761 kb on - strand, within ABID97_RS03985at 819.709 kb on + strand, within ABID97_RS03995at 819.709 kb on + strand, within ABID97_RS03995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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816,919 + ABID97_RS03980 0.21 +0.6
816,919 + ABID97_RS03980 0.21 +0.0
816,919 + ABID97_RS03980 0.21 +0.0
816,919 + ABID97_RS03980 0.21 -0.9
816,919 + ABID97_RS03980 0.21 -0.7
816,919 + ABID97_RS03980 0.21 -0.4
816,919 + ABID97_RS03980 0.21 +0.3
816,919 + ABID97_RS03980 0.21 -0.2
816,920 - ABID97_RS03980 0.21 +0.2
816,920 - ABID97_RS03980 0.21 -1.2
816,920 - ABID97_RS03980 0.21 -0.2
816,920 - ABID97_RS03980 0.21 +0.0
816,977 - ABID97_RS03980 0.27 -0.3
817,228 + ABID97_RS03980 0.55 +0.1
817,229 - ABID97_RS03980 0.55 +2.4
817,229 - ABID97_RS03980 0.55 +0.4
817,229 - ABID97_RS03980 0.55 +0.2
818,131 - ABID97_RS03985 0.31 -0.2
818,473 + ABID97_RS03985 0.63 +0.1
818,649 + ABID97_RS03985 0.79 +0.1
818,649 + ABID97_RS03985 0.79 -0.4
818,650 - ABID97_RS03985 0.79 +0.1
818,650 - ABID97_RS03985 0.79 +0.7
818,760 + ABID97_RS03985 0.90 +0.8
818,760 + ABID97_RS03985 0.90 +1.9
818,760 + ABID97_RS03985 0.90 -2.2
818,760 + ABID97_RS03985 0.90 -0.4
818,760 + ABID97_RS03985 0.90 +0.0
818,761 - ABID97_RS03985 0.90 -0.3
818,761 - ABID97_RS03985 0.90 +0.5
818,761 - ABID97_RS03985 0.90 -0.6
818,761 - ABID97_RS03985 0.90 -2.1
818,761 - ABID97_RS03985 0.90 +1.6
818,761 - ABID97_RS03985 0.90 -0.4
818,761 - ABID97_RS03985 0.90 +0.2
819,709 + ABID97_RS03995 0.82 +0.8
819,709 + ABID97_RS03995 0.82 +0.4

Or see this region's nucleotide sequence