Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03025 and ABID97_RS03030 are separated by 1 nucleotides ABID97_RS03030 and ABID97_RS03035 are separated by 10 nucleotides ABID97_RS03035 and ABID97_RS03040 are separated by 43 nucleotides
ABID97_RS03025: ABID97_RS03025 - feruloyl-CoA synthase, at 612,915 to 614,720
_RS03025
ABID97_RS03030: ABID97_RS03030 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 614,722 to 615,663
_RS03030
ABID97_RS03035: ABID97_RS03035 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 615,674 to 616,666
_RS03035
ABID97_RS03040: ABID97_RS03040 - 3-keto-5-aminohexanoate cleavage protein, at 616,710 to 617,633
_RS03040
Position (kb) 615
616
617 Strain fitness (log2 ratio) -1
0
1 at 614.764 kb on + strand at 614.764 kb on + strand at 615.155 kb on + strand, within ABID97_RS03030 at 615.155 kb on + strand, within ABID97_RS03030 at 615.155 kb on + strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.885 kb on + strand, within ABID97_RS03035 at 615.885 kb on + strand, within ABID97_RS03035 at 615.885 kb on + strand, within ABID97_RS03035 at 615.886 kb on - strand, within ABID97_RS03035 at 615.886 kb on - strand, within ABID97_RS03035 at 616.185 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.344 kb on + strand, within ABID97_RS03035 at 616.344 kb on + strand, within ABID97_RS03035 at 616.345 kb on - strand, within ABID97_RS03035 at 616.345 kb on - strand, within ABID97_RS03035 at 616.557 kb on + strand, within ABID97_RS03035 at 616.557 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.561 kb on - strand, within ABID97_RS03035 at 616.561 kb on - strand, within ABID97_RS03035 at 616.870 kb on + strand, within ABID97_RS03040 at 616.871 kb on - strand, within ABID97_RS03040 at 616.871 kb on - strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 614,764 + -0.0 614,764 + -0.3 615,155 + ABID97_RS03030 0.46 -0.1 615,155 + ABID97_RS03030 0.46 -0.2 615,155 + ABID97_RS03030 0.46 +0.9 615,156 - ABID97_RS03030 0.46 -0.2 615,156 - ABID97_RS03030 0.46 -0.1 615,156 - ABID97_RS03030 0.46 +1.6 615,885 + ABID97_RS03035 0.21 -0.5 615,885 + ABID97_RS03035 0.21 -0.1 615,885 + ABID97_RS03035 0.21 +0.1 615,886 - ABID97_RS03035 0.21 -0.1 615,886 - ABID97_RS03035 0.21 -1.2 616,185 + ABID97_RS03035 0.51 -1.7 616,329 + ABID97_RS03035 0.66 +0.4 616,329 + ABID97_RS03035 0.66 -1.1 616,329 + ABID97_RS03035 0.66 -0.5 616,344 + ABID97_RS03035 0.67 +0.1 616,344 + ABID97_RS03035 0.67 -0.5 616,345 - ABID97_RS03035 0.68 -0.3 616,345 - ABID97_RS03035 0.68 +0.0 616,557 + ABID97_RS03035 0.89 -0.3 616,557 + ABID97_RS03035 0.89 +0.7 616,560 + ABID97_RS03035 0.89 +0.1 616,560 + ABID97_RS03035 0.89 -0.5 616,560 + ABID97_RS03035 0.89 +0.2 616,560 + ABID97_RS03035 0.89 -0.2 616,560 + ABID97_RS03035 0.89 -0.2 616,560 + ABID97_RS03035 0.89 -0.1 616,561 - ABID97_RS03035 0.89 -0.6 616,561 - ABID97_RS03035 0.89 -0.3 616,870 + ABID97_RS03040 0.17 +1.0 616,871 - ABID97_RS03040 0.17 -0.0 616,871 - ABID97_RS03040 0.17 -0.1 617,074 + ABID97_RS03040 0.39 +1.3 617,074 + ABID97_RS03040 0.39 -0.1 617,074 + ABID97_RS03040 0.39 -1.1 617,075 - ABID97_RS03040 0.40 +0.5 617,075 - ABID97_RS03040 0.40 +0.8 617,075 - ABID97_RS03040 0.40 +0.1
Or see this region's nucleotide sequence