Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01445

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01440 and ABID97_RS01445 are separated by 5 nucleotidesABID97_RS01445 and ABID97_RS01450 overlap by 4 nucleotidesABID97_RS01450 and ABID97_RS01455 are separated by 86 nucleotides ABID97_RS01440: ABID97_RS01440 - acyl-CoA dehydrogenase family protein, at 291,320 to 292,513 _RS01440 ABID97_RS01445: ABID97_RS01445 - AMP-binding protein, at 292,519 to 294,144 _RS01445 ABID97_RS01450: ABID97_RS01450 - RidA family protein, at 294,141 to 294,539 _RS01450 ABID97_RS01455: ABID97_RS01455 - AacA4 family aminoglycoside N(6')-acetyltransferase, at 294,626 to 295,183 _RS01455 Position (kb) 292 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2at 291.680 kb on + strand, within ABID97_RS01440at 291.680 kb on + strand, within ABID97_RS01440at 291.680 kb on + strand, within ABID97_RS01440at 291.848 kb on + strand, within ABID97_RS01440at 291.849 kb on - strand, within ABID97_RS01440at 291.849 kb on - strand, within ABID97_RS01440at 291.849 kb on - strand, within ABID97_RS01440at 291.849 kb on - strand, within ABID97_RS01440at 292.245 kb on - strand, within ABID97_RS01440at 292.245 kb on - strand, within ABID97_RS01440at 292.427 kb on + strandat 292.454 kb on + strandat 292.454 kb on + strandat 292.454 kb on + strandat 292.455 kb on - strandat 292.455 kb on - strandat 292.455 kb on - strandat 292.455 kb on - strandat 292.455 kb on - strandat 292.455 kb on - strandat 292.511 kb on + strandat 293.282 kb on + strand, within ABID97_RS01445at 293.312 kb on - strand, within ABID97_RS01445at 293.312 kb on - strand, within ABID97_RS01445at 293.312 kb on - strand, within ABID97_RS01445at 293.383 kb on + strand, within ABID97_RS01445at 293.563 kb on + strand, within ABID97_RS01445at 293.564 kb on - strand, within ABID97_RS01445at 293.740 kb on + strand, within ABID97_RS01445at 293.740 kb on + strand, within ABID97_RS01445at 293.761 kb on + strand, within ABID97_RS01445at 293.797 kb on + strand, within ABID97_RS01445at 293.797 kb on + strand, within ABID97_RS01445at 293.806 kb on + strand, within ABID97_RS01445at 293.846 kb on - strand, within ABID97_RS01445at 293.846 kb on - strand, within ABID97_RS01445at 294.678 kb on + strandat 294.678 kb on + strandat 294.678 kb on + strandat 294.679 kb on - strandat 294.679 kb on - strandat 294.679 kb on - strandat 294.679 kb on - strandat 294.679 kb on - strandat 294.679 kb on - strandat 294.738 kb on + strand, within ABID97_RS01455at 294.951 kb on + strand, within ABID97_RS01455at 294.951 kb on + strand, within ABID97_RS01455at 294.952 kb on - strand, within ABID97_RS01455at 294.952 kb on - strand, within ABID97_RS01455at 294.952 kb on - strand, within ABID97_RS01455at 294.996 kb on + strand, within ABID97_RS01455at 294.996 kb on + strand, within ABID97_RS01455at 294.997 kb on - strand, within ABID97_RS01455at 295.035 kb on + strand, within ABID97_RS01455at 295.035 kb on + strand, within ABID97_RS01455at 295.035 kb on + strand, within ABID97_RS01455at 295.035 kb on + strand, within ABID97_RS01455at 295.036 kb on - strand, within ABID97_RS01455at 295.036 kb on - strand, within ABID97_RS01455at 295.036 kb on - strand, within ABID97_RS01455at 295.060 kb on + strand, within ABID97_RS01455at 295.061 kb on - strand, within ABID97_RS01455at 295.126 kb on + strand, within ABID97_RS01455at 295.126 kb on + strand, within ABID97_RS01455at 295.126 kb on + strand, within ABID97_RS01455at 295.126 kb on + strand, within ABID97_RS01455at 295.126 kb on + strand, within ABID97_RS01455at 295.127 kb on - strand, within ABID97_RS01455at 295.127 kb on - strand, within ABID97_RS01455at 295.127 kb on - strand, within ABID97_RS01455at 295.127 kb on - strand, within ABID97_RS01455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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291,680 + ABID97_RS01440 0.30 +0.3
291,680 + ABID97_RS01440 0.30 +0.7
291,680 + ABID97_RS01440 0.30 -0.3
291,848 + ABID97_RS01440 0.44 +0.3
291,849 - ABID97_RS01440 0.44 +0.1
291,849 - ABID97_RS01440 0.44 -0.4
291,849 - ABID97_RS01440 0.44 +0.1
291,849 - ABID97_RS01440 0.44 +0.4
292,245 - ABID97_RS01440 0.77 +0.6
292,245 - ABID97_RS01440 0.77 +0.9
292,427 + -0.5
292,454 + -0.2
292,454 + +0.7
292,454 + +0.2
292,455 - -0.5
292,455 - +0.2
292,455 - -0.1
292,455 - +0.0
292,455 - -0.2
292,455 - +0.7
292,511 + -2.2
293,282 + ABID97_RS01445 0.47 +0.6
293,312 - ABID97_RS01445 0.49 +0.0
293,312 - ABID97_RS01445 0.49 +0.2
293,312 - ABID97_RS01445 0.49 -0.6
293,383 + ABID97_RS01445 0.53 +0.2
293,563 + ABID97_RS01445 0.64 -0.2
293,564 - ABID97_RS01445 0.64 +0.5
293,740 + ABID97_RS01445 0.75 -0.4
293,740 + ABID97_RS01445 0.75 -0.0
293,761 + ABID97_RS01445 0.76 +0.3
293,797 + ABID97_RS01445 0.79 +0.4
293,797 + ABID97_RS01445 0.79 +1.0
293,806 + ABID97_RS01445 0.79 +0.1
293,846 - ABID97_RS01445 0.82 +0.3
293,846 - ABID97_RS01445 0.82 +1.9
294,678 + -0.3
294,678 + +0.6
294,678 + -0.0
294,679 - +1.0
294,679 - +0.7
294,679 - +0.2
294,679 - -2.2
294,679 - +0.9
294,679 - +1.1
294,738 + ABID97_RS01455 0.20 -0.0
294,951 + ABID97_RS01455 0.58 -0.3
294,951 + ABID97_RS01455 0.58 -0.9
294,952 - ABID97_RS01455 0.58 +0.8
294,952 - ABID97_RS01455 0.58 -0.4
294,952 - ABID97_RS01455 0.58 +0.6
294,996 + ABID97_RS01455 0.66 +0.5
294,996 + ABID97_RS01455 0.66 +0.3
294,997 - ABID97_RS01455 0.66 +0.7
295,035 + ABID97_RS01455 0.73 +0.6
295,035 + ABID97_RS01455 0.73 +0.1
295,035 + ABID97_RS01455 0.73 +0.0
295,035 + ABID97_RS01455 0.73 +0.6
295,036 - ABID97_RS01455 0.73 +0.5
295,036 - ABID97_RS01455 0.73 +0.8
295,036 - ABID97_RS01455 0.73 +0.8
295,060 + ABID97_RS01455 0.78 +1.2
295,061 - ABID97_RS01455 0.78 +0.8
295,126 + ABID97_RS01455 0.90 +0.6
295,126 + ABID97_RS01455 0.90 +0.4
295,126 + ABID97_RS01455 0.90 +0.2
295,126 + ABID97_RS01455 0.90 +0.1
295,126 + ABID97_RS01455 0.90 +1.5
295,127 - ABID97_RS01455 0.90 +0.7
295,127 - ABID97_RS01455 0.90 +1.2
295,127 - ABID97_RS01455 0.90 +0.3
295,127 - ABID97_RS01455 0.90 -0.1

Or see this region's nucleotide sequence