Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yibL and lldP are separated by 371 nucleotides lldP and lldR overlap by 1 nucleotides lldR and lldD overlap by 4 nucleotides
b3602: yibL - hypothetical protein (NCBI), at 3,774,688 to 3,775,050
yibL
b3603: lldP - (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) , at 3,775,422 to 3,777,077
lldP
b3604: lldR - DNA-binding transcriptional repressor (NCBI), at 3,777,077 to 3,777,853
lldR
b3605: lldD - L-lactate dehydrogenase, FMN-linked (NCBI), at 3,777,850 to 3,779,040
lldD
Position (kb)
3775
3776
3777
3778 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3774.424 kb on - strand at 3774.476 kb on - strand at 3774.490 kb on - strand at 3774.604 kb on - strand at 3774.622 kb on - strand at 3774.629 kb on + strand at 3774.629 kb on + strand at 3774.651 kb on - strand at 3774.651 kb on - strand at 3774.656 kb on - strand at 3774.656 kb on - strand at 3774.657 kb on - strand at 3774.732 kb on + strand, within yibL at 3774.738 kb on - strand, within yibL at 3774.738 kb on - strand, within yibL at 3774.781 kb on + strand, within yibL at 3774.858 kb on - strand, within yibL at 3774.867 kb on + strand, within yibL at 3774.898 kb on + strand, within yibL at 3774.898 kb on + strand, within yibL at 3774.938 kb on - strand, within yibL at 3774.938 kb on - strand, within yibL at 3774.944 kb on + strand, within yibL at 3774.944 kb on + strand, within yibL at 3774.973 kb on + strand, within yibL at 3774.994 kb on - strand, within yibL at 3775.062 kb on + strand at 3775.062 kb on + strand at 3775.125 kb on - strand at 3775.125 kb on - strand at 3775.130 kb on - strand at 3775.130 kb on - strand at 3775.156 kb on + strand at 3775.156 kb on + strand at 3775.183 kb on + strand at 3775.209 kb on - strand at 3775.303 kb on - strand at 3775.355 kb on - strand at 3775.355 kb on - strand at 3775.369 kb on - strand at 3775.369 kb on - strand at 3775.412 kb on - strand at 3775.412 kb on - strand at 3775.414 kb on - strand at 3775.726 kb on - strand, within lldP at 3775.726 kb on - strand, within lldP at 3775.743 kb on - strand, within lldP at 3775.805 kb on + strand, within lldP at 3775.805 kb on + strand, within lldP at 3775.905 kb on + strand, within lldP at 3775.913 kb on - strand, within lldP at 3775.913 kb on - strand, within lldP at 3775.967 kb on + strand, within lldP at 3775.980 kb on - strand, within lldP at 3775.980 kb on - strand, within lldP at 3776.042 kb on + strand, within lldP at 3776.050 kb on - strand, within lldP at 3776.055 kb on - strand, within lldP at 3776.066 kb on + strand, within lldP at 3776.101 kb on - strand, within lldP at 3776.131 kb on + strand, within lldP at 3776.135 kb on + strand, within lldP at 3776.191 kb on + strand, within lldP at 3776.211 kb on - strand, within lldP at 3776.239 kb on + strand, within lldP at 3776.263 kb on + strand, within lldP at 3776.283 kb on + strand, within lldP at 3776.286 kb on - strand, within lldP at 3776.288 kb on + strand, within lldP at 3776.288 kb on + strand, within lldP at 3776.288 kb on + strand, within lldP at 3776.288 kb on + strand, within lldP at 3776.297 kb on - strand, within lldP at 3776.297 kb on - strand, within lldP at 3776.305 kb on + strand, within lldP at 3776.323 kb on - strand, within lldP at 3776.323 kb on - strand, within lldP at 3776.337 kb on + strand, within lldP at 3776.344 kb on + strand, within lldP at 3776.344 kb on + strand, within lldP at 3776.345 kb on - strand, within lldP at 3776.363 kb on + strand, within lldP at 3776.364 kb on - strand, within lldP at 3776.381 kb on + strand, within lldP at 3776.412 kb on + strand, within lldP at 3776.412 kb on + strand, within lldP at 3776.412 kb on + strand, within lldP at 3776.412 kb on + strand, within lldP at 3776.414 kb on + strand, within lldP at 3776.420 kb on - strand, within lldP at 3776.422 kb on - strand, within lldP at 3776.422 kb on - strand, within lldP at 3776.424 kb on - strand, within lldP at 3776.429 kb on - strand, within lldP at 3776.429 kb on - strand, within lldP at 3776.457 kb on - strand, within lldP at 3776.457 kb on - strand, within lldP at 3776.480 kb on + strand, within lldP at 3776.489 kb on + strand, within lldP at 3776.520 kb on + strand, within lldP at 3776.520 kb on + strand, within lldP at 3776.556 kb on + strand, within lldP at 3776.556 kb on + strand, within lldP at 3776.565 kb on - strand, within lldP at 3776.565 kb on - strand, within lldP at 3776.603 kb on + strand, within lldP at 3776.603 kb on + strand, within lldP at 3776.667 kb on - strand, within lldP at 3776.700 kb on - strand, within lldP at 3776.702 kb on + strand, within lldP at 3776.702 kb on + strand, within lldP at 3776.712 kb on - strand, within lldP at 3776.712 kb on - strand, within lldP at 3776.726 kb on + strand, within lldP at 3776.734 kb on + strand, within lldP at 3776.780 kb on - strand, within lldP at 3776.817 kb on - strand, within lldP at 3776.928 kb on - strand at 3776.958 kb on - strand at 3776.963 kb on - strand at 3776.963 kb on - strand at 3776.972 kb on - strand at 3777.017 kb on - strand at 3777.019 kb on + strand at 3777.019 kb on + strand at 3777.024 kb on - strand at 3777.027 kb on + strand at 3777.027 kb on - strand at 3777.049 kb on + strand at 3777.049 kb on + strand at 3777.050 kb on - strand at 3777.050 kb on - strand at 3777.050 kb on - strand at 3777.050 kb on - strand at 3777.083 kb on + strand at 3777.216 kb on - strand, within lldR at 3777.216 kb on - strand, within lldR at 3777.235 kb on - strand, within lldR at 3777.235 kb on - strand, within lldR at 3777.272 kb on - strand, within lldR at 3777.272 kb on - strand, within lldR at 3777.406 kb on - strand, within lldR at 3777.426 kb on - strand, within lldR at 3777.468 kb on + strand, within lldR at 3777.479 kb on + strand, within lldR at 3777.484 kb on + strand, within lldR at 3777.538 kb on + strand, within lldR at 3777.547 kb on - strand, within lldR at 3777.586 kb on + strand, within lldR at 3777.601 kb on - strand, within lldR at 3777.651 kb on + strand, within lldR at 3777.651 kb on + strand, within lldR at 3777.651 kb on + strand, within lldR at 3777.651 kb on + strand, within lldR at 3777.670 kb on + strand, within lldR at 3777.728 kb on + strand, within lldR at 3777.728 kb on + strand, within lldR at 3777.731 kb on - strand, within lldR at 3777.731 kb on - strand, within lldR at 3777.747 kb on - strand, within lldR at 3777.747 kb on - strand, within lldR at 3777.747 kb on - strand, within lldR at 3777.759 kb on + strand, within lldR at 3777.762 kb on - strand, within lldR at 3777.820 kb on + strand at 3777.889 kb on - strand at 3777.937 kb on - strand at 3777.937 kb on - strand at 3777.937 kb on - strand at 3777.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,774,424 - -0.1 3,774,476 - -1.3 3,774,490 - +0.4 3,774,604 - +0.1 3,774,622 - -0.9 3,774,629 + -0.2 3,774,629 + +0.5 3,774,651 - -0.0 3,774,651 - -0.1 3,774,656 - +0.9 3,774,656 - +2.1 3,774,657 - -1.2 3,774,732 + yibL b3602 0.12 -0.7 3,774,738 - yibL b3602 0.14 -1.0 3,774,738 - yibL b3602 0.14 -0.3 3,774,781 + yibL b3602 0.26 +0.9 3,774,858 - yibL b3602 0.47 +0.0 3,774,867 + yibL b3602 0.49 +0.1 3,774,898 + yibL b3602 0.58 -0.6 3,774,898 + yibL b3602 0.58 -0.8 3,774,938 - yibL b3602 0.69 -0.4 3,774,938 - yibL b3602 0.69 +0.3 3,774,944 + yibL b3602 0.71 +0.1 3,774,944 + yibL b3602 0.71 +0.2 3,774,973 + yibL b3602 0.79 +0.3 3,774,994 - yibL b3602 0.84 +0.2 3,775,062 + -0.0 3,775,062 + +0.1 3,775,125 - -0.9 3,775,125 - -1.8 3,775,130 - -0.0 3,775,130 - -0.3 3,775,156 + +0.0 3,775,156 + +0.2 3,775,183 + +1.1 3,775,209 - -0.0 3,775,303 - -4.1 3,775,355 - -2.8 3,775,355 - -1.8 3,775,369 - -1.1 3,775,369 - -2.0 3,775,412 - -1.9 3,775,412 - -1.1 3,775,414 - -2.1 3,775,726 - lldP b3603 0.18 -1.5 3,775,726 - lldP b3603 0.18 -2.0 3,775,743 - lldP b3603 0.19 -2.7 3,775,805 + lldP b3603 0.23 -3.6 3,775,805 + lldP b3603 0.23 -2.5 3,775,905 + lldP b3603 0.29 -3.9 3,775,913 - lldP b3603 0.30 -1.5 3,775,913 - lldP b3603 0.30 -2.5 3,775,967 + lldP b3603 0.33 -2.1 3,775,980 - lldP b3603 0.34 -2.1 3,775,980 - lldP b3603 0.34 -1.9 3,776,042 + lldP b3603 0.37 -2.6 3,776,050 - lldP b3603 0.38 -2.6 3,776,055 - lldP b3603 0.38 -1.8 3,776,066 + lldP b3603 0.39 -4.4 3,776,101 - lldP b3603 0.41 -1.3 3,776,131 + lldP b3603 0.43 -2.6 3,776,135 + lldP b3603 0.43 -2.2 3,776,191 + lldP b3603 0.46 -3.9 3,776,211 - lldP b3603 0.48 -3.6 3,776,239 + lldP b3603 0.49 -3.0 3,776,263 + lldP b3603 0.51 -3.0 3,776,283 + lldP b3603 0.52 -3.2 3,776,286 - lldP b3603 0.52 -3.3 3,776,288 + lldP b3603 0.52 -2.9 3,776,288 + lldP b3603 0.52 -4.0 3,776,288 + lldP b3603 0.52 -1.9 3,776,288 + lldP b3603 0.52 -1.6 3,776,297 - lldP b3603 0.53 -2.6 3,776,297 - lldP b3603 0.53 +0.1 3,776,305 + lldP b3603 0.53 -2.0 3,776,323 - lldP b3603 0.54 -3.7 3,776,323 - lldP b3603 0.54 -2.2 3,776,337 + lldP b3603 0.55 -2.9 3,776,344 + lldP b3603 0.56 -2.2 3,776,344 + lldP b3603 0.56 -1.5 3,776,345 - lldP b3603 0.56 -2.6 3,776,363 + lldP b3603 0.57 -2.1 3,776,364 - lldP b3603 0.57 -3.0 3,776,381 + lldP b3603 0.58 -3.7 3,776,412 + lldP b3603 0.60 -2.1 3,776,412 + lldP b3603 0.60 -2.6 3,776,412 + lldP b3603 0.60 -4.0 3,776,412 + lldP b3603 0.60 -1.3 3,776,414 + lldP b3603 0.60 -1.1 3,776,420 - lldP b3603 0.60 -4.2 3,776,422 - lldP b3603 0.60 -2.1 3,776,422 - lldP b3603 0.60 -0.6 3,776,424 - lldP b3603 0.61 -2.4 3,776,429 - lldP b3603 0.61 -2.2 3,776,429 - lldP b3603 0.61 -1.5 3,776,457 - lldP b3603 0.62 -2.1 3,776,457 - lldP b3603 0.62 -1.9 3,776,480 + lldP b3603 0.64 -2.4 3,776,489 + lldP b3603 0.64 -2.0 3,776,520 + lldP b3603 0.66 -2.3 3,776,520 + lldP b3603 0.66 -2.8 3,776,556 + lldP b3603 0.68 -1.8 3,776,556 + lldP b3603 0.68 -2.1 3,776,565 - lldP b3603 0.69 -4.1 3,776,565 - lldP b3603 0.69 -3.2 3,776,603 + lldP b3603 0.71 -2.8 3,776,603 + lldP b3603 0.71 -2.9 3,776,667 - lldP b3603 0.75 -2.4 3,776,700 - lldP b3603 0.77 -3.3 3,776,702 + lldP b3603 0.77 -3.3 3,776,702 + lldP b3603 0.77 -3.2 3,776,712 - lldP b3603 0.78 -1.5 3,776,712 - lldP b3603 0.78 -2.2 3,776,726 + lldP b3603 0.79 -5.2 3,776,734 + lldP b3603 0.79 -3.0 3,776,780 - lldP b3603 0.82 -3.6 3,776,817 - lldP b3603 0.84 -2.3 3,776,928 - -3.2 3,776,958 - -2.2 3,776,963 - -3.1 3,776,963 - -2.9 3,776,972 - -2.3 3,777,017 - -1.8 3,777,019 + -3.7 3,777,019 + -1.5 3,777,024 - -3.6 3,777,027 + -2.5 3,777,027 - -3.6 3,777,049 + -1.8 3,777,049 + -2.6 3,777,050 - -1.8 3,777,050 - -0.8 3,777,050 - -2.1 3,777,050 - -2.7 3,777,083 + -1.6 3,777,216 - lldR b3604 0.18 -2.0 3,777,216 - lldR b3604 0.18 -0.6 3,777,235 - lldR b3604 0.20 -3.6 3,777,235 - lldR b3604 0.20 -1.7 3,777,272 - lldR b3604 0.25 -1.9 3,777,272 - lldR b3604 0.25 -2.5 3,777,406 - lldR b3604 0.42 -2.0 3,777,426 - lldR b3604 0.45 -1.3 3,777,468 + lldR b3604 0.50 -2.7 3,777,479 + lldR b3604 0.52 -4.5 3,777,484 + lldR b3604 0.52 -1.5 3,777,538 + lldR b3604 0.59 -2.6 3,777,547 - lldR b3604 0.60 -0.8 3,777,586 + lldR b3604 0.66 -2.8 3,777,601 - lldR b3604 0.67 -3.4 3,777,651 + lldR b3604 0.74 -2.5 3,777,651 + lldR b3604 0.74 -1.4 3,777,651 + lldR b3604 0.74 -1.3 3,777,651 + lldR b3604 0.74 -2.5 3,777,670 + lldR b3604 0.76 -2.1 3,777,728 + lldR b3604 0.84 -3.0 3,777,728 + lldR b3604 0.84 -1.9 3,777,731 - lldR b3604 0.84 -2.3 3,777,731 - lldR b3604 0.84 -0.7 3,777,747 - lldR b3604 0.86 -1.5 3,777,747 - lldR b3604 0.86 -3.7 3,777,747 - lldR b3604 0.86 -3.2 3,777,759 + lldR b3604 0.88 -2.5 3,777,762 - lldR b3604 0.88 -2.8 3,777,820 + -1.2 3,777,889 - +0.7 3,777,937 - +0.5 3,777,937 - +0.9 3,777,937 - +1.5 3,777,939 - -1.3
Or see this region's nucleotide sequence