Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS09710 and RPSI07_RS09715 are separated by 174 nucleotides RPSI07_RS09715 and RPSI07_RS09720 are separated by 22 nucleotides RPSI07_RS09720 and RPSI07_RS09725 are separated by 117 nucleotides
RPSI07_RS09710: RPSI07_RS09710 - cytochrome c5 family protein, at 399,877 to 400,770
_RS09710
RPSI07_RS09715: RPSI07_RS09715 - hypothetical protein, at 400,945 to 401,358
_RS09715
RPSI07_RS09720: RPSI07_RS09720 - metal-dependent hydrolase, at 401,381 to 401,887
_RS09720
RPSI07_RS09725: RPSI07_RS09725 - hybrid sensor histidine kinase/response regulator, at 402,005 to 404,983
_RS09725
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.552 kb on + strand, within RPSI07_RS09710 at 400.660 kb on + strand at 400.661 kb on - strand, within RPSI07_RS09710 at 400.708 kb on + strand at 400.708 kb on + strand at 400.708 kb on + strand at 400.709 kb on - strand at 400.709 kb on - strand at 400.709 kb on - strand at 400.768 kb on + strand at 400.768 kb on + strand at 400.768 kb on + strand at 400.768 kb on + strand at 400.768 kb on + strand at 400.769 kb on - strand at 400.769 kb on - strand at 400.827 kb on - strand at 400.860 kb on + strand at 400.860 kb on + strand at 400.861 kb on - strand at 400.861 kb on - strand at 400.861 kb on - strand at 400.861 kb on - strand at 400.864 kb on + strand at 400.864 kb on + strand at 400.864 kb on + strand at 400.864 kb on + strand at 400.864 kb on + strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.865 kb on - strand at 400.968 kb on - strand at 401.071 kb on + strand, within RPSI07_RS09715 at 401.071 kb on + strand, within RPSI07_RS09715 at 401.071 kb on + strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.072 kb on - strand, within RPSI07_RS09715 at 401.137 kb on + strand, within RPSI07_RS09715 at 401.137 kb on + strand, within RPSI07_RS09715 at 401.137 kb on + strand, within RPSI07_RS09715 at 401.137 kb on + strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.138 kb on - strand, within RPSI07_RS09715 at 401.173 kb on + strand, within RPSI07_RS09715 at 401.174 kb on - strand, within RPSI07_RS09715 at 401.174 kb on - strand, within RPSI07_RS09715 at 401.180 kb on - strand, within RPSI07_RS09715 at 401.201 kb on - strand, within RPSI07_RS09715 at 401.201 kb on - strand, within RPSI07_RS09715 at 401.201 kb on - strand, within RPSI07_RS09715 at 401.356 kb on + strand at 401.357 kb on - strand at 401.382 kb on + strand at 401.383 kb on - strand at 401.383 kb on - strand at 401.383 kb on - strand at 401.523 kb on + strand, within RPSI07_RS09720 at 401.523 kb on + strand, within RPSI07_RS09720 at 401.524 kb on - strand, within RPSI07_RS09720 at 401.598 kb on + strand, within RPSI07_RS09720 at 401.598 kb on + strand, within RPSI07_RS09720 at 401.598 kb on + strand, within RPSI07_RS09720 at 401.598 kb on + strand, within RPSI07_RS09720 at 401.599 kb on - strand, within RPSI07_RS09720 at 401.599 kb on - strand, within RPSI07_RS09720 at 401.599 kb on - strand, within RPSI07_RS09720 at 401.599 kb on - strand, within RPSI07_RS09720 at 401.599 kb on - strand, within RPSI07_RS09720 at 401.658 kb on + strand, within RPSI07_RS09720 at 401.659 kb on - strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.700 kb on + strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.701 kb on - strand, within RPSI07_RS09720 at 401.739 kb on + strand, within RPSI07_RS09720 at 401.739 kb on + strand, within RPSI07_RS09720 at 401.739 kb on + strand, within RPSI07_RS09720 at 401.739 kb on + strand, within RPSI07_RS09720 at 401.739 kb on + strand, within RPSI07_RS09720 at 401.740 kb on - strand, within RPSI07_RS09720 at 401.740 kb on - strand, within RPSI07_RS09720 at 401.740 kb on - strand, within RPSI07_RS09720 at 401.823 kb on + strand, within RPSI07_RS09720 at 401.823 kb on + strand, within RPSI07_RS09720 at 401.824 kb on - strand, within RPSI07_RS09720 at 401.824 kb on - strand, within RPSI07_RS09720 at 401.824 kb on - strand, within RPSI07_RS09720 at 401.871 kb on + strand at 401.871 kb on + strand at 401.871 kb on + strand at 401.871 kb on + strand at 401.871 kb on + strand at 401.872 kb on - strand at 401.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 400,552 + RPSI07_RS09710 0.76 +1.6 400,660 + +1.5 400,661 - RPSI07_RS09710 0.88 +0.6 400,708 + -1.2 400,708 + +0.2 400,708 + +2.5 400,709 - +0.5 400,709 - -0.1 400,709 - -2.4 400,768 + +1.6 400,768 + +1.7 400,768 + -0.5 400,768 + +0.1 400,768 + -0.7 400,769 - -0.9 400,769 - -1.0 400,827 - +0.0 400,860 + -0.9 400,860 + -0.2 400,861 - +0.2 400,861 - +0.1 400,861 - +1.2 400,861 - -0.4 400,864 + -0.3 400,864 + +2.7 400,864 + +0.8 400,864 + +1.4 400,864 + -0.1 400,865 - -0.5 400,865 - -0.0 400,865 - +0.1 400,865 - -0.5 400,865 - -0.4 400,865 - +0.6 400,865 - -0.0 400,865 - +1.3 400,865 - -1.2 400,865 - +1.3 400,968 - +0.7 401,071 + RPSI07_RS09715 0.30 -0.3 401,071 + RPSI07_RS09715 0.30 -1.1 401,071 + RPSI07_RS09715 0.30 +0.2 401,072 - RPSI07_RS09715 0.31 -0.7 401,072 - RPSI07_RS09715 0.31 +0.8 401,072 - RPSI07_RS09715 0.31 +0.2 401,072 - RPSI07_RS09715 0.31 -0.2 401,072 - RPSI07_RS09715 0.31 +1.3 401,072 - RPSI07_RS09715 0.31 +1.2 401,072 - RPSI07_RS09715 0.31 -0.7 401,137 + RPSI07_RS09715 0.46 -0.0 401,137 + RPSI07_RS09715 0.46 -1.0 401,137 + RPSI07_RS09715 0.46 -0.2 401,137 + RPSI07_RS09715 0.46 -1.9 401,138 - RPSI07_RS09715 0.47 +0.6 401,138 - RPSI07_RS09715 0.47 -1.1 401,138 - RPSI07_RS09715 0.47 -0.5 401,138 - RPSI07_RS09715 0.47 -1.5 401,138 - RPSI07_RS09715 0.47 +0.8 401,138 - RPSI07_RS09715 0.47 +0.1 401,173 + RPSI07_RS09715 0.55 -1.0 401,174 - RPSI07_RS09715 0.55 -1.2 401,174 - RPSI07_RS09715 0.55 -2.6 401,180 - RPSI07_RS09715 0.57 +1.0 401,201 - RPSI07_RS09715 0.62 +0.2 401,201 - RPSI07_RS09715 0.62 +0.5 401,201 - RPSI07_RS09715 0.62 +0.7 401,356 + +1.1 401,357 - -0.4 401,382 + -0.2 401,383 - -1.3 401,383 - -1.0 401,383 - +0.3 401,523 + RPSI07_RS09720 0.28 -1.5 401,523 + RPSI07_RS09720 0.28 -0.4 401,524 - RPSI07_RS09720 0.28 +0.0 401,598 + RPSI07_RS09720 0.43 -0.0 401,598 + RPSI07_RS09720 0.43 -0.1 401,598 + RPSI07_RS09720 0.43 +0.8 401,598 + RPSI07_RS09720 0.43 -1.3 401,599 - RPSI07_RS09720 0.43 -0.2 401,599 - RPSI07_RS09720 0.43 +0.5 401,599 - RPSI07_RS09720 0.43 +1.5 401,599 - RPSI07_RS09720 0.43 +0.2 401,599 - RPSI07_RS09720 0.43 -2.0 401,658 + RPSI07_RS09720 0.55 -0.5 401,659 - RPSI07_RS09720 0.55 -0.2 401,700 + RPSI07_RS09720 0.63 -0.5 401,700 + RPSI07_RS09720 0.63 -0.4 401,700 + RPSI07_RS09720 0.63 -0.9 401,700 + RPSI07_RS09720 0.63 +1.6 401,700 + RPSI07_RS09720 0.63 -0.8 401,700 + RPSI07_RS09720 0.63 -1.3 401,700 + RPSI07_RS09720 0.63 -1.3 401,701 - RPSI07_RS09720 0.63 +0.5 401,701 - RPSI07_RS09720 0.63 -0.5 401,701 - RPSI07_RS09720 0.63 +0.1 401,701 - RPSI07_RS09720 0.63 -0.7 401,701 - RPSI07_RS09720 0.63 +0.1 401,701 - RPSI07_RS09720 0.63 +0.2 401,701 - RPSI07_RS09720 0.63 -1.3 401,701 - RPSI07_RS09720 0.63 -0.8 401,739 + RPSI07_RS09720 0.71 -1.4 401,739 + RPSI07_RS09720 0.71 -1.9 401,739 + RPSI07_RS09720 0.71 -0.2 401,739 + RPSI07_RS09720 0.71 -0.7 401,739 + RPSI07_RS09720 0.71 +0.2 401,740 - RPSI07_RS09720 0.71 -0.9 401,740 - RPSI07_RS09720 0.71 -1.1 401,740 - RPSI07_RS09720 0.71 -0.1 401,823 + RPSI07_RS09720 0.87 -0.9 401,823 + RPSI07_RS09720 0.87 +1.1 401,824 - RPSI07_RS09720 0.87 +0.1 401,824 - RPSI07_RS09720 0.87 +0.8 401,824 - RPSI07_RS09720 0.87 -1.6 401,871 + -0.7 401,871 + -0.4 401,871 + +0.2 401,871 + +0.9 401,871 + +0.3 401,872 - -0.4 401,872 - +0.7
Or see this region's nucleotide sequence