Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08065

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS08060 and RPSI07_RS08065 are separated by 221 nucleotidesRPSI07_RS08065 and RPSI07_RS08070 are separated by 75 nucleotides RPSI07_RS08060: RPSI07_RS08060 - CPBP family intramembrane metalloprotease, at 46,178 to 47,002 _RS08060 RPSI07_RS08065: RPSI07_RS08065 - MFS transporter, at 47,224 to 48,495 _RS08065 RPSI07_RS08070: RPSI07_RS08070 - flavohemoprotein, at 48,571 to 49,758 _RS08070 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 46.259 kb on + strandat 46.260 kb on - strandat 46.260 kb on - strandat 46.322 kb on + strand, within RPSI07_RS08060at 46.322 kb on + strand, within RPSI07_RS08060at 46.322 kb on + strand, within RPSI07_RS08060at 46.322 kb on + strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.323 kb on - strand, within RPSI07_RS08060at 46.391 kb on + strand, within RPSI07_RS08060at 46.391 kb on + strand, within RPSI07_RS08060at 46.392 kb on - strand, within RPSI07_RS08060at 46.392 kb on - strand, within RPSI07_RS08060at 46.556 kb on + strand, within RPSI07_RS08060at 46.556 kb on + strand, within RPSI07_RS08060at 46.556 kb on + strand, within RPSI07_RS08060at 46.556 kb on + strandat 46.557 kb on - strand, within RPSI07_RS08060at 46.557 kb on - strand, within RPSI07_RS08060at 46.557 kb on - strand, within RPSI07_RS08060at 46.557 kb on - strand, within RPSI07_RS08060at 46.557 kb on - strand, within RPSI07_RS08060at 46.731 kb on - strand, within RPSI07_RS08060at 46.731 kb on - strand, within RPSI07_RS08060at 46.778 kb on + strand, within RPSI07_RS08060at 46.778 kb on + strand, within RPSI07_RS08060at 46.778 kb on + strand, within RPSI07_RS08060at 46.778 kb on + strand, within RPSI07_RS08060at 46.779 kb on - strand, within RPSI07_RS08060at 46.779 kb on - strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strand, within RPSI07_RS08060at 46.826 kb on + strandat 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.827 kb on - strand, within RPSI07_RS08060at 46.952 kb on + strandat 46.952 kb on + strandat 46.952 kb on + strandat 46.952 kb on + strandat 46.952 kb on + strandat 46.953 kb on - strandat 47.000 kb on + strandat 47.176 kb on + strandat 47.176 kb on + strandat 47.176 kb on + strandat 47.176 kb on + strandat 47.177 kb on - strandat 47.177 kb on - strandat 47.177 kb on - strandat 47.177 kb on - strandat 47.386 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.428 kb on + strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.429 kb on - strand, within RPSI07_RS08065at 47.431 kb on - strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.470 kb on + strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.471 kb on - strand, within RPSI07_RS08065at 47.989 kb on + strand, within RPSI07_RS08065at 47.989 kb on + strand, within RPSI07_RS08065at 47.989 kb on + strand, within RPSI07_RS08065at 47.990 kb on - strand, within RPSI07_RS08065at 47.990 kb on - strand, within RPSI07_RS08065at 47.990 kb on - strand, within RPSI07_RS08065at 47.990 kb on - strand, within RPSI07_RS08065at 47.990 kb on - strand, within RPSI07_RS08065at 48.090 kb on - strand, within RPSI07_RS08065at 48.090 kb on - strand, within RPSI07_RS08065at 48.090 kb on - strand, within RPSI07_RS08065at 48.180 kb on - strandat 48.339 kb on + strand, within RPSI07_RS08065at 48.339 kb on + strand, within RPSI07_RS08065at 48.339 kb on + strand, within RPSI07_RS08065at 48.339 kb on + strand, within RPSI07_RS08065at 48.340 kb on - strand, within RPSI07_RS08065at 48.340 kb on - strand, within RPSI07_RS08065at 48.646 kb on + strandat 48.692 kb on + strand, within RPSI07_RS08070at 48.692 kb on + strand, within RPSI07_RS08070at 48.693 kb on - strand, within RPSI07_RS08070at 48.693 kb on - strand, within RPSI07_RS08070at 48.693 kb on - strand, within RPSI07_RS08070at 48.693 kb on - strand, within RPSI07_RS08070at 48.729 kb on + strand, within RPSI07_RS08070at 48.730 kb on - strand, within RPSI07_RS08070at 48.730 kb on - strand, within RPSI07_RS08070at 48.730 kb on - strand, within RPSI07_RS08070at 49.199 kb on + strand, within RPSI07_RS08070at 49.200 kb on - strand, within RPSI07_RS08070at 49.200 kb on - strand, within RPSI07_RS08070at 49.200 kb on - strand, within RPSI07_RS08070at 49.200 kb on - strand, within RPSI07_RS08070at 49.338 kb on - strand, within RPSI07_RS08070at 49.338 kb on - strand, within RPSI07_RS08070at 49.338 kb on - strand, within RPSI07_RS08070at 49.382 kb on + strand, within RPSI07_RS08070

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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46,259 + -0.4
46,260 - -0.2
46,260 - +0.3
46,322 + RPSI07_RS08060 0.17 -0.0
46,322 + RPSI07_RS08060 0.17 -1.4
46,322 + RPSI07_RS08060 0.17 +0.7
46,322 + RPSI07_RS08060 0.17 +0.2
46,323 - RPSI07_RS08060 0.18 +1.3
46,323 - RPSI07_RS08060 0.18 +0.7
46,323 - RPSI07_RS08060 0.18 +3.2
46,323 - RPSI07_RS08060 0.18 -0.9
46,323 - RPSI07_RS08060 0.18 +2.2
46,323 - RPSI07_RS08060 0.18 -1.7
46,323 - RPSI07_RS08060 0.18 +1.9
46,391 + RPSI07_RS08060 0.26 +0.3
46,391 + RPSI07_RS08060 0.26 +0.8
46,392 - RPSI07_RS08060 0.26 -1.5
46,392 - RPSI07_RS08060 0.26 -0.3
46,556 + RPSI07_RS08060 0.46 -0.1
46,556 + RPSI07_RS08060 0.46 -0.6
46,556 + RPSI07_RS08060 0.46 -2.1
46,556 + +0.7
46,557 - RPSI07_RS08060 0.46 -1.2
46,557 - RPSI07_RS08060 0.46 -0.5
46,557 - RPSI07_RS08060 0.46 -1.2
46,557 - RPSI07_RS08060 0.46 +1.1
46,557 - RPSI07_RS08060 0.46 -0.2
46,731 - RPSI07_RS08060 0.67 -0.4
46,731 - RPSI07_RS08060 0.67 -0.8
46,778 + RPSI07_RS08060 0.73 -0.3
46,778 + RPSI07_RS08060 0.73 -1.5
46,778 + RPSI07_RS08060 0.73 -0.5
46,778 + RPSI07_RS08060 0.73 +0.6
46,779 - RPSI07_RS08060 0.73 +0.4
46,779 - RPSI07_RS08060 0.73 +0.3
46,826 + RPSI07_RS08060 0.79 +4.8
46,826 + RPSI07_RS08060 0.79 +0.0
46,826 + RPSI07_RS08060 0.79 +1.9
46,826 + RPSI07_RS08060 0.79 -1.6
46,826 + RPSI07_RS08060 0.79 +0.8
46,826 + RPSI07_RS08060 0.79 -2.4
46,826 + RPSI07_RS08060 0.79 -0.1
46,826 + RPSI07_RS08060 0.79 -0.1
46,826 + RPSI07_RS08060 0.79 -1.6
46,826 + RPSI07_RS08060 0.79 +0.3
46,826 + +1.9
46,827 - RPSI07_RS08060 0.79 -1.3
46,827 - RPSI07_RS08060 0.79 -0.7
46,827 - RPSI07_RS08060 0.79 -0.6
46,827 - RPSI07_RS08060 0.79 +0.4
46,827 - RPSI07_RS08060 0.79 +1.2
46,827 - RPSI07_RS08060 0.79 +1.0
46,827 - RPSI07_RS08060 0.79 -1.1
46,827 - RPSI07_RS08060 0.79 +0.3
46,827 - RPSI07_RS08060 0.79 +0.8
46,952 + +0.6
46,952 + +0.0
46,952 + -0.6
46,952 + -0.1
46,952 + -0.6
46,953 - -0.6
47,000 + -1.9
47,176 + -1.7
47,176 + +0.2
47,176 + -0.7
47,176 + -0.0
47,177 - +0.8
47,177 - +0.6
47,177 - -0.2
47,177 - +0.6
47,386 + RPSI07_RS08065 0.13 +0.6
47,428 + RPSI07_RS08065 0.16 -0.6
47,428 + RPSI07_RS08065 0.16 +0.1
47,428 + RPSI07_RS08065 0.16 +2.5
47,428 + RPSI07_RS08065 0.16 +0.3
47,428 + RPSI07_RS08065 0.16 -1.0
47,428 + RPSI07_RS08065 0.16 +0.6
47,428 + RPSI07_RS08065 0.16 +0.5
47,428 + RPSI07_RS08065 0.16 -0.4
47,428 + RPSI07_RS08065 0.16 -1.0
47,428 + RPSI07_RS08065 0.16 -0.1
47,428 + RPSI07_RS08065 0.16 +1.0
47,428 + RPSI07_RS08065 0.16 +0.6
47,428 + RPSI07_RS08065 0.16 -0.7
47,428 + RPSI07_RS08065 0.16 +0.9
47,428 + RPSI07_RS08065 0.16 +1.2
47,429 - RPSI07_RS08065 0.16 +0.8
47,429 - RPSI07_RS08065 0.16 -1.1
47,429 - RPSI07_RS08065 0.16 -0.3
47,429 - RPSI07_RS08065 0.16 -0.7
47,429 - RPSI07_RS08065 0.16 +1.0
47,429 - RPSI07_RS08065 0.16 +0.9
47,429 - RPSI07_RS08065 0.16 -0.6
47,429 - RPSI07_RS08065 0.16 +0.8
47,429 - RPSI07_RS08065 0.16 -1.2
47,429 - RPSI07_RS08065 0.16 -0.2
47,429 - RPSI07_RS08065 0.16 -0.9
47,429 - RPSI07_RS08065 0.16 +0.1
47,431 - RPSI07_RS08065 0.16 -0.2
47,470 + RPSI07_RS08065 0.19 -1.0
47,470 + RPSI07_RS08065 0.19 -0.1
47,470 + RPSI07_RS08065 0.19 +3.6
47,470 + RPSI07_RS08065 0.19 -1.1
47,470 + RPSI07_RS08065 0.19 +0.6
47,470 + RPSI07_RS08065 0.19 +0.2
47,470 + RPSI07_RS08065 0.19 +0.8
47,471 - RPSI07_RS08065 0.19 -0.7
47,471 - RPSI07_RS08065 0.19 +0.5
47,471 - RPSI07_RS08065 0.19 -0.2
47,471 - RPSI07_RS08065 0.19 +0.3
47,471 - RPSI07_RS08065 0.19 +0.2
47,471 - RPSI07_RS08065 0.19 +0.8
47,471 - RPSI07_RS08065 0.19 -0.8
47,471 - RPSI07_RS08065 0.19 +0.5
47,471 - RPSI07_RS08065 0.19 +1.5
47,471 - RPSI07_RS08065 0.19 +0.9
47,471 - RPSI07_RS08065 0.19 -0.6
47,989 + RPSI07_RS08065 0.60 -1.4
47,989 + RPSI07_RS08065 0.60 +2.8
47,989 + RPSI07_RS08065 0.60 -0.9
47,990 - RPSI07_RS08065 0.60 -1.2
47,990 - RPSI07_RS08065 0.60 +0.1
47,990 - RPSI07_RS08065 0.60 +0.2
47,990 - RPSI07_RS08065 0.60 -0.8
47,990 - RPSI07_RS08065 0.60 +0.8
48,090 - RPSI07_RS08065 0.68 +0.4
48,090 - RPSI07_RS08065 0.68 +1.3
48,090 - RPSI07_RS08065 0.68 -0.8
48,180 - +1.5
48,339 + RPSI07_RS08065 0.88 -0.3
48,339 + RPSI07_RS08065 0.88 +1.1
48,339 + RPSI07_RS08065 0.88 -0.5
48,339 + RPSI07_RS08065 0.88 -0.0
48,340 - RPSI07_RS08065 0.88 +0.5
48,340 - RPSI07_RS08065 0.88 +0.4
48,646 + +0.4
48,692 + RPSI07_RS08070 0.10 -1.8
48,692 + RPSI07_RS08070 0.10 -0.1
48,693 - RPSI07_RS08070 0.10 -0.9
48,693 - RPSI07_RS08070 0.10 -0.4
48,693 - RPSI07_RS08070 0.10 +0.1
48,693 - RPSI07_RS08070 0.10 -0.6
48,729 + RPSI07_RS08070 0.13 -0.1
48,730 - RPSI07_RS08070 0.13 -2.2
48,730 - RPSI07_RS08070 0.13 -0.3
48,730 - RPSI07_RS08070 0.13 -1.2
49,199 + RPSI07_RS08070 0.53 -0.1
49,200 - RPSI07_RS08070 0.53 +1.5
49,200 - RPSI07_RS08070 0.53 +0.3
49,200 - RPSI07_RS08070 0.53 -0.4
49,200 - RPSI07_RS08070 0.53 +0.6
49,338 - RPSI07_RS08070 0.65 +0.1
49,338 - RPSI07_RS08070 0.65 -0.3
49,338 - RPSI07_RS08070 0.65 -1.0
49,382 + RPSI07_RS08070 0.68 +0.8

Or see this region's nucleotide sequence