Experiment: KB with Nitrofurantoin 31.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4422 and Psyr_4423 are separated by 13 nucleotides Psyr_4423 and Psyr_4424 are separated by 84 nucleotides Psyr_4424 and Psyr_4425 are separated by 249 nucleotides
Psyr_4422: Psyr_4422 - Protein of unknown function DUF461, at 5,287,258 to 5,287,719
_4422
Psyr_4423: Psyr_4423 - conserved hypothetical protein, at 5,287,733 to 5,288,164
_4423
Psyr_4424: Psyr_4424 - Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix, at 5,288,249 to 5,289,622
_4424
Psyr_4425: Psyr_4425 - hypothetical protein, at 5,289,872 to 5,293,318
_4425
Position (kb) 5288
5289
5290 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.324 kb on + strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.325 kb on - strand, within Psyr_4422 at 5287.399 kb on + strand, within Psyr_4422 at 5287.400 kb on - strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.490 kb on + strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.491 kb on - strand, within Psyr_4422 at 5287.689 kb on - strand at 5287.771 kb on + strand at 5287.772 kb on - strand at 5287.772 kb on - strand at 5287.991 kb on + strand, within Psyr_4423 at 5288.358 kb on - strand at 5288.358 kb on - strand at 5288.390 kb on + strand, within Psyr_4424 at 5288.390 kb on + strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.391 kb on - strand, within Psyr_4424 at 5288.464 kb on + strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.465 kb on - strand, within Psyr_4424 at 5288.468 kb on + strand, within Psyr_4424 at 5288.492 kb on + strand, within Psyr_4424 at 5288.492 kb on + strand, within Psyr_4424 at 5288.729 kb on + strand, within Psyr_4424 at 5288.733 kb on + strand, within Psyr_4424 at 5288.733 kb on + strand, within Psyr_4424 at 5288.734 kb on - strand, within Psyr_4424 at 5289.254 kb on + strand, within Psyr_4424 at 5289.255 kb on - strand, within Psyr_4424 at 5289.255 kb on - strand, within Psyr_4424 at 5289.255 kb on - strand, within Psyr_4424 at 5289.284 kb on + strand, within Psyr_4424 at 5289.284 kb on + strand, within Psyr_4424 at 5289.294 kb on - strand, within Psyr_4424 at 5289.374 kb on - strand, within Psyr_4424 at 5289.374 kb on - strand, within Psyr_4424 at 5289.463 kb on - strand, within Psyr_4424 at 5289.583 kb on - strand at 5289.620 kb on + strand at 5289.620 kb on + strand at 5289.620 kb on + strand at 5289.620 kb on + strand at 5289.620 kb on + strand at 5289.620 kb on + strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.621 kb on - strand at 5289.680 kb on - strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.728 kb on + strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.729 kb on - strand at 5289.806 kb on + strand at 5289.806 kb on + strand at 5289.806 kb on + strand at 5289.806 kb on + strand at 5289.806 kb on + strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.807 kb on - strand at 5289.879 kb on + strand at 5289.928 kb on + strand at 5289.928 kb on + strand at 5289.929 kb on - strand at 5289.929 kb on - strand at 5289.932 kb on + strand at 5289.933 kb on - strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.068 kb on + strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.069 kb on - strand at 5290.152 kb on - strand at 5290.223 kb on + strand, within Psyr_4425 at 5290.223 kb on + strand, within Psyr_4425 at 5290.224 kb on - strand, within Psyr_4425 at 5290.256 kb on + strand, within Psyr_4425 at 5290.257 kb on - strand, within Psyr_4425 at 5290.257 kb on - strand, within Psyr_4425 at 5290.257 kb on - strand, within Psyr_4425 at 5290.257 kb on - strand, within Psyr_4425 at 5290.278 kb on - strand, within Psyr_4425 at 5290.322 kb on + strand, within Psyr_4425 at 5290.400 kb on + strand, within Psyr_4425 at 5290.401 kb on - strand, within Psyr_4425 at 5290.619 kb on + strand, within Psyr_4425
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 31.25 ug/ml remove 5,287,324 + Psyr_4422 0.14 -1.0 5,287,324 + Psyr_4422 0.14 -0.1 5,287,324 + Psyr_4422 0.14 -0.6 5,287,325 - Psyr_4422 0.15 -0.9 5,287,325 - Psyr_4422 0.15 -1.6 5,287,325 - Psyr_4422 0.15 +1.1 5,287,325 - Psyr_4422 0.15 -0.8 5,287,325 - Psyr_4422 0.15 -0.8 5,287,399 + Psyr_4422 0.31 -1.5 5,287,400 - Psyr_4422 0.31 +1.1 5,287,490 + Psyr_4422 0.50 +0.1 5,287,490 + Psyr_4422 0.50 +0.4 5,287,490 + Psyr_4422 0.50 +0.3 5,287,490 + Psyr_4422 0.50 +0.7 5,287,490 + Psyr_4422 0.50 -0.6 5,287,490 + Psyr_4422 0.50 -2.5 5,287,490 + Psyr_4422 0.50 +0.1 5,287,490 + Psyr_4422 0.50 +0.6 5,287,491 - Psyr_4422 0.50 -0.0 5,287,491 - Psyr_4422 0.50 +0.8 5,287,491 - Psyr_4422 0.50 -0.3 5,287,491 - Psyr_4422 0.50 -1.4 5,287,491 - Psyr_4422 0.50 -1.6 5,287,491 - Psyr_4422 0.50 -1.3 5,287,491 - Psyr_4422 0.50 -0.7 5,287,689 - -1.5 5,287,771 + +0.7 5,287,772 - -0.4 5,287,772 - +0.1 5,287,991 + Psyr_4423 0.60 -0.5 5,288,358 - +0.6 5,288,358 - -0.6 5,288,390 + Psyr_4424 0.10 -0.6 5,288,390 + Psyr_4424 0.10 -1.0 5,288,391 - Psyr_4424 0.10 -2.7 5,288,391 - Psyr_4424 0.10 +1.1 5,288,391 - Psyr_4424 0.10 -0.7 5,288,391 - Psyr_4424 0.10 -0.3 5,288,391 - Psyr_4424 0.10 -1.9 5,288,464 + Psyr_4424 0.16 -0.5 5,288,465 - Psyr_4424 0.16 -1.4 5,288,465 - Psyr_4424 0.16 +1.1 5,288,465 - Psyr_4424 0.16 -0.7 5,288,465 - Psyr_4424 0.16 -0.9 5,288,465 - Psyr_4424 0.16 -1.3 5,288,468 + Psyr_4424 0.16 +0.3 5,288,492 + Psyr_4424 0.18 +1.1 5,288,492 + Psyr_4424 0.18 -0.4 5,288,729 + Psyr_4424 0.35 -1.7 5,288,733 + Psyr_4424 0.35 -0.1 5,288,733 + Psyr_4424 0.35 -0.9 5,288,734 - Psyr_4424 0.35 -1.3 5,289,254 + Psyr_4424 0.73 +0.1 5,289,255 - Psyr_4424 0.73 -0.0 5,289,255 - Psyr_4424 0.73 -0.5 5,289,255 - Psyr_4424 0.73 -0.4 5,289,284 + Psyr_4424 0.75 -1.3 5,289,284 + Psyr_4424 0.75 -0.1 5,289,294 - Psyr_4424 0.76 +0.4 5,289,374 - Psyr_4424 0.82 -0.9 5,289,374 - Psyr_4424 0.82 -1.1 5,289,463 - Psyr_4424 0.88 +1.1 5,289,583 - -1.8 5,289,620 + -1.7 5,289,620 + -0.4 5,289,620 + -1.4 5,289,620 + -0.5 5,289,620 + -0.0 5,289,620 + -0.4 5,289,621 - -0.7 5,289,621 - -0.4 5,289,621 - -1.5 5,289,621 - -0.9 5,289,621 - -0.7 5,289,621 - +0.3 5,289,621 - +0.1 5,289,621 - -1.3 5,289,680 - -1.3 5,289,728 + -0.1 5,289,728 + -0.6 5,289,728 + -0.1 5,289,728 + -0.9 5,289,728 + -1.5 5,289,728 + -0.2 5,289,728 + +0.2 5,289,729 - -2.3 5,289,729 - +0.3 5,289,729 - -0.3 5,289,729 - -0.7 5,289,729 - -1.5 5,289,729 - +3.4 5,289,729 - -2.4 5,289,729 - -2.0 5,289,729 - -0.8 5,289,729 - +0.1 5,289,729 - -0.9 5,289,729 - -0.9 5,289,729 - -0.6 5,289,806 + -0.1 5,289,806 + +0.2 5,289,806 + -0.5 5,289,806 + +0.1 5,289,806 + -0.4 5,289,807 - -1.1 5,289,807 - -0.8 5,289,807 - -1.9 5,289,807 - -0.3 5,289,807 - -1.3 5,289,807 - +0.4 5,289,807 - +0.7 5,289,807 - -0.2 5,289,807 - -0.6 5,289,879 + +0.2 5,289,928 + -0.5 5,289,928 + +0.1 5,289,929 - +0.1 5,289,929 - +0.6 5,289,932 + -0.0 5,289,933 - +0.3 5,290,068 + +0.4 5,290,068 + +1.1 5,290,068 + -1.1 5,290,068 + +0.1 5,290,068 + +0.6 5,290,068 + -0.7 5,290,068 + -0.3 5,290,068 + +0.1 5,290,068 + -0.7 5,290,069 - +0.0 5,290,069 - -1.4 5,290,069 - -0.5 5,290,069 - +1.0 5,290,069 - -0.5 5,290,069 - +0.5 5,290,069 - +0.1 5,290,069 - -0.2 5,290,069 - -1.4 5,290,069 - -1.4 5,290,152 - +1.1 5,290,223 + Psyr_4425 0.10 -0.3 5,290,223 + Psyr_4425 0.10 -0.5 5,290,224 - Psyr_4425 0.10 -0.9 5,290,256 + Psyr_4425 0.11 -0.3 5,290,257 - Psyr_4425 0.11 -0.5 5,290,257 - Psyr_4425 0.11 -0.5 5,290,257 - Psyr_4425 0.11 +0.5 5,290,257 - Psyr_4425 0.11 +0.8 5,290,278 - Psyr_4425 0.12 -1.4 5,290,322 + Psyr_4425 0.13 +0.1 5,290,400 + Psyr_4425 0.15 -0.3 5,290,401 - Psyr_4425 0.15 +0.1 5,290,619 + Psyr_4425 0.22 +0.8
Or see this region's nucleotide sequence