Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3856

Experiment: KB with Nitrofurantoin 31.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3855 and Psyr_3856 are separated by 108 nucleotidesPsyr_3856 and Psyr_3857 are separated by 107 nucleotidesPsyr_3857 and Psyr_3858 are separated by 180 nucleotides Psyr_3855: Psyr_3855 - Beta-lactamase, at 4,594,240 to 4,595,388 _3855 Psyr_3856: Psyr_3856 - Helicase c2, at 4,595,497 to 4,597,641 _3856 Psyr_3857: Psyr_3857 - conserved hypothetical protein, at 4,597,749 to 4,598,213 _3857 Psyr_3858: Psyr_3858 - Nucleoside-specific channel-forming protein, Tsx, at 4,598,394 to 4,599,353 _3858 Position (kb) 4595 4596 4597 4598Strain fitness (log2 ratio) -2 -1 0 1 2at 4594.565 kb on + strand, within Psyr_3855at 4594.565 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.994 kb on + strand, within Psyr_3855at 4595.070 kb on + strand, within Psyr_3855at 4595.071 kb on - strand, within Psyr_3855at 4595.206 kb on - strand, within Psyr_3855at 4595.347 kb on + strandat 4595.347 kb on + strandat 4595.348 kb on - strandat 4595.370 kb on - strandat 4595.503 kb on + strandat 4595.504 kb on - strandat 4595.504 kb on - strandat 4595.504 kb on - strandat 4595.824 kb on + strand, within Psyr_3856at 4595.966 kb on + strand, within Psyr_3856at 4596.812 kb on + strand, within Psyr_3856at 4596.813 kb on - strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.337 kb on + strand, within Psyr_3856at 4597.338 kb on - strand, within Psyr_3856at 4597.427 kb on + strandat 4597.428 kb on - strandat 4597.690 kb on - strandat 4597.707 kb on - strandat 4597.711 kb on + strandat 4597.712 kb on - strandat 4597.720 kb on - strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.771 kb on - strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4598.002 kb on - strand, within Psyr_3857at 4598.002 kb on - strand, within Psyr_3857at 4598.025 kb on + strand, within Psyr_3857at 4598.025 kb on + strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.136 kb on - strand, within Psyr_3857at 4598.217 kb on - strandat 4598.217 kb on - strandat 4598.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 31.25 ug/ml
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4,594,565 + Psyr_3855 0.28 -0.1
4,594,565 + Psyr_3855 0.28 -0.9
4,594,907 + Psyr_3855 0.58 -0.4
4,594,907 + Psyr_3855 0.58 -1.5
4,594,907 + Psyr_3855 0.58 -0.1
4,594,907 + Psyr_3855 0.58 +0.9
4,594,907 + Psyr_3855 0.58 -1.9
4,594,908 - Psyr_3855 0.58 -0.3
4,594,908 - Psyr_3855 0.58 +1.8
4,594,908 - Psyr_3855 0.58 -0.9
4,594,908 - Psyr_3855 0.58 +0.8
4,594,994 + Psyr_3855 0.66 +1.3
4,595,070 + Psyr_3855 0.72 +0.5
4,595,071 - Psyr_3855 0.72 +1.1
4,595,206 - Psyr_3855 0.84 -1.1
4,595,347 + -0.7
4,595,347 + +0.3
4,595,348 - -1.8
4,595,370 - +0.3
4,595,503 + -1.1
4,595,504 - -0.3
4,595,504 - +0.5
4,595,504 - +0.4
4,595,824 + Psyr_3856 0.15 -0.3
4,595,966 + Psyr_3856 0.22 -0.9
4,596,812 + Psyr_3856 0.61 -0.1
4,596,813 - Psyr_3856 0.61 -1.2
4,596,869 + Psyr_3856 0.64 -0.6
4,596,869 + Psyr_3856 0.64 -0.3
4,596,869 + Psyr_3856 0.64 -0.6
4,596,869 + Psyr_3856 0.64 -1.2
4,596,869 + Psyr_3856 0.64 +0.4
4,596,869 + Psyr_3856 0.64 -0.4
4,596,869 + Psyr_3856 0.64 +0.9
4,596,869 + Psyr_3856 0.64 +0.1
4,596,869 + Psyr_3856 0.64 -0.3
4,596,869 + Psyr_3856 0.64 -0.3
4,596,870 - Psyr_3856 0.64 +0.6
4,596,870 - Psyr_3856 0.64 -0.0
4,596,870 - Psyr_3856 0.64 +0.9
4,596,870 - Psyr_3856 0.64 +0.2
4,596,870 - Psyr_3856 0.64 +0.2
4,596,870 - Psyr_3856 0.64 -0.3
4,596,870 - Psyr_3856 0.64 -0.9
4,596,870 - Psyr_3856 0.64 -0.6
4,596,986 + Psyr_3856 0.69 +0.9
4,596,986 + Psyr_3856 0.69 -1.2
4,596,986 + Psyr_3856 0.69 +0.3
4,596,986 + Psyr_3856 0.69 -0.1
4,596,986 + Psyr_3856 0.69 -0.2
4,596,986 + Psyr_3856 0.69 -0.8
4,596,986 + Psyr_3856 0.69 +0.9
4,596,986 + Psyr_3856 0.69 -0.4
4,596,986 + Psyr_3856 0.69 -0.2
4,596,987 - Psyr_3856 0.69 -0.2
4,596,987 - Psyr_3856 0.69 -1.1
4,596,987 - Psyr_3856 0.69 -0.6
4,596,987 - Psyr_3856 0.69 -2.1
4,596,987 - Psyr_3856 0.69 -0.7
4,596,987 - Psyr_3856 0.69 -1.6
4,596,987 - Psyr_3856 0.69 -2.2
4,596,987 - Psyr_3856 0.69 +0.4
4,596,987 - Psyr_3856 0.69 -0.6
4,596,987 - Psyr_3856 0.69 +0.3
4,596,987 - Psyr_3856 0.69 +1.1
4,597,262 + Psyr_3856 0.82 +0.0
4,597,262 + Psyr_3856 0.82 -1.6
4,597,263 - Psyr_3856 0.82 -0.3
4,597,263 - Psyr_3856 0.82 -0.2
4,597,337 + Psyr_3856 0.86 +1.2
4,597,338 - Psyr_3856 0.86 -0.6
4,597,427 + -0.9
4,597,428 - +1.1
4,597,690 - -0.8
4,597,707 - +0.1
4,597,711 + -1.2
4,597,712 - -1.1
4,597,720 - +0.8
4,597,770 + +1.1
4,597,770 + +0.1
4,597,771 - +0.5
4,597,772 + +2.2
4,597,772 + +0.1
4,597,772 + +0.8
4,597,772 + -0.1
4,597,772 + -0.1
4,597,772 + +0.1
4,597,773 - +0.0
4,597,773 - +0.7
4,597,773 - +0.0
4,597,773 - +0.0
4,597,773 - -0.4
4,597,773 - -0.6
4,597,773 - +0.1
4,597,773 - +0.9
4,597,773 - +0.9
4,598,002 - Psyr_3857 0.54 +1.2
4,598,002 - Psyr_3857 0.54 -1.1
4,598,025 + Psyr_3857 0.59 +0.0
4,598,025 + Psyr_3857 0.59 -0.1
4,598,026 - Psyr_3857 0.60 -0.1
4,598,026 - Psyr_3857 0.60 +0.7
4,598,136 - Psyr_3857 0.83 +0.3
4,598,217 - -0.3
4,598,217 - -1.2
4,598,481 - -0.5

Or see this region's nucleotide sequence