Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3523

Experiment: KB with Nitrofurantoin 31.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3522 and Psyr_3523 are separated by 140 nucleotidesPsyr_3523 and Psyr_3524 are separated by 4 nucleotides Psyr_3522: Psyr_3522 - L-serine ammonia-lyase, at 4,197,604 to 4,198,980 _3522 Psyr_3523: Psyr_3523 - Peptidase M20D, amidohydrolase, at 4,199,121 to 4,200,278 _3523 Psyr_3524: Psyr_3524 - Aldehyde dehydrogenase (NAD+), at 4,200,283 to 4,201,800 _3524 Position (kb) 4199 4200 4201Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4198.373 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.643 kb on + strand, within Psyr_3522at 4198.644 kb on - strand, within Psyr_3522at 4198.709 kb on + strand, within Psyr_3522at 4198.710 kb on - strand, within Psyr_3522at 4198.740 kb on + strand, within Psyr_3522at 4198.931 kb on - strandat 4198.931 kb on - strandat 4199.006 kb on - strandat 4199.006 kb on - strandat 4199.028 kb on - strandat 4199.074 kb on + strandat 4199.075 kb on - strandat 4199.075 kb on - strandat 4199.075 kb on - strandat 4199.075 kb on - strandat 4199.082 kb on - strandat 4199.200 kb on + strandat 4199.203 kb on + strandat 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.419 kb on + strand, within Psyr_3523at 4199.419 kb on + strand, within Psyr_3523at 4199.420 kb on - strand, within Psyr_3523at 4199.420 kb on - strand, within Psyr_3523at 4199.420 kb on - strand, within Psyr_3523at 4199.815 kb on + strand, within Psyr_3523at 4199.815 kb on + strand, within Psyr_3523at 4199.815 kb on + strand, within Psyr_3523at 4200.363 kb on - strandat 4200.363 kb on - strandat 4200.442 kb on - strand, within Psyr_3524at 4200.674 kb on + strand, within Psyr_3524at 4200.675 kb on - strand, within Psyr_3524at 4200.675 kb on - strand, within Psyr_3524at 4200.675 kb on - strand, within Psyr_3524at 4200.675 kb on - strand, within Psyr_3524at 4200.770 kb on + strand, within Psyr_3524at 4200.770 kb on + strand, within Psyr_3524at 4200.771 kb on - strand, within Psyr_3524at 4200.771 kb on - strand, within Psyr_3524

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 31.25 ug/ml
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4,198,373 + Psyr_3522 0.56 -0.1
4,198,510 + Psyr_3522 0.66 -0.7
4,198,510 + Psyr_3522 0.66 -0.3
4,198,510 + Psyr_3522 0.66 -0.2
4,198,510 + Psyr_3522 0.66 -0.7
4,198,510 + Psyr_3522 0.66 -0.2
4,198,510 + Psyr_3522 0.66 -1.4
4,198,511 - Psyr_3522 0.66 -0.2
4,198,511 - Psyr_3522 0.66 -1.4
4,198,511 - Psyr_3522 0.66 -0.2
4,198,511 - Psyr_3522 0.66 +0.5
4,198,511 - Psyr_3522 0.66 -0.2
4,198,643 + Psyr_3522 0.75 -1.5
4,198,644 - Psyr_3522 0.76 -0.4
4,198,709 + Psyr_3522 0.80 -0.6
4,198,710 - Psyr_3522 0.80 +1.8
4,198,740 + Psyr_3522 0.82 +1.3
4,198,931 - -2.5
4,198,931 - -0.8
4,199,006 - -1.4
4,199,006 - -0.2
4,199,028 - +0.8
4,199,074 + +0.3
4,199,075 - +0.8
4,199,075 - +0.3
4,199,075 - -0.2
4,199,075 - -0.4
4,199,082 - -0.5
4,199,200 + -0.7
4,199,203 + -0.1
4,199,257 + Psyr_3523 0.12 +0.3
4,199,257 + Psyr_3523 0.12 -0.3
4,199,257 + Psyr_3523 0.12 -2.0
4,199,257 + Psyr_3523 0.12 -0.1
4,199,257 + Psyr_3523 0.12 -1.0
4,199,257 + Psyr_3523 0.12 +1.3
4,199,257 + Psyr_3523 0.12 +0.1
4,199,258 - Psyr_3523 0.12 +1.3
4,199,258 - Psyr_3523 0.12 -0.3
4,199,258 - Psyr_3523 0.12 +0.4
4,199,258 - Psyr_3523 0.12 +0.1
4,199,258 - Psyr_3523 0.12 -0.5
4,199,258 - Psyr_3523 0.12 -0.1
4,199,258 - Psyr_3523 0.12 +0.5
4,199,258 - Psyr_3523 0.12 -0.4
4,199,419 + Psyr_3523 0.26 -0.6
4,199,419 + Psyr_3523 0.26 -1.5
4,199,420 - Psyr_3523 0.26 -0.9
4,199,420 - Psyr_3523 0.26 +0.3
4,199,420 - Psyr_3523 0.26 +0.3
4,199,815 + Psyr_3523 0.60 +0.4
4,199,815 + Psyr_3523 0.60 +0.0
4,199,815 + Psyr_3523 0.60 -0.7
4,200,363 - +2.8
4,200,363 - -0.2
4,200,442 - Psyr_3524 0.10 +0.0
4,200,674 + Psyr_3524 0.26 +0.8
4,200,675 - Psyr_3524 0.26 -0.2
4,200,675 - Psyr_3524 0.26 -0.3
4,200,675 - Psyr_3524 0.26 +0.2
4,200,675 - Psyr_3524 0.26 -0.0
4,200,770 + Psyr_3524 0.32 -0.2
4,200,770 + Psyr_3524 0.32 -2.7
4,200,771 - Psyr_3524 0.32 -0.4
4,200,771 - Psyr_3524 0.32 -0.6

Or see this region's nucleotide sequence