Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2667

Experiment: KB with Nitrofurantoin 31.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 31.25 ug/ml
3,235,926	-		Psyr_2665	0.76	+0.0
3,235,926	-		Psyr_2665	0.76	+0.3
3,235,927	+		Psyr_2665	0.76	-1.0
3,235,928	-		Psyr_2665	0.76	-0.3
3,236,014	-				-0.8
3,236,267	+				-0.5
3,236,268	-				-0.5
3,236,283	+		Psyr_2666	0.11	-0.5
3,236,284	-		Psyr_2666	0.11	+0.0
3,236,318	+		Psyr_2666	0.17	-0.0
3,236,319	-		Psyr_2666	0.18	+1.3
3,236,349	+		Psyr_2666	0.23	+0.7
3,236,412	+		Psyr_2666	0.35	+0.7
3,236,412	+		Psyr_2666	0.35	+0.5
3,236,438	-		Psyr_2666	0.40	-1.4
3,236,467	+		Psyr_2666	0.46	-0.1
3,236,468	-		Psyr_2666	0.46	+0.3
3,236,503	+		Psyr_2666	0.52	-0.8
3,236,504	-		Psyr_2666	0.53	-0.4
3,236,504	-		Psyr_2666	0.53	+0.3
3,236,504	-		Psyr_2666	0.53	-0.3
3,236,509	+		Psyr_2666	0.54	-0.5
3,236,644	-		Psyr_2666	0.79	-0.5
3,236,698	-		Psyr_2666	0.89	-0.2
3,236,795	+				+0.1
3,236,914	-				-0.5
3,236,914	-				-0.2
3,236,918	+				+0.7
3,237,104	+				+0.5
3,237,635	+		Psyr_2667	0.25	-0.7
3,237,635	+		Psyr_2667	0.25	+1.4
3,237,635	+		Psyr_2667	0.25	+0.6
3,237,635	+		Psyr_2667	0.25	+0.2
3,237,635	+		Psyr_2667	0.25	+0.4
3,237,635	+		Psyr_2667	0.25	+0.7
3,237,635	+		Psyr_2667	0.25	-0.6
3,237,636	-		Psyr_2667	0.25	+0.1
3,237,636	-		Psyr_2667	0.25	-0.1
3,237,636	-		Psyr_2667	0.25	+0.2
3,237,707	+		Psyr_2667	0.27	-0.6
3,237,707	+		Psyr_2667	0.27	+0.6
3,237,708	-		Psyr_2667	0.27	+0.7
3,237,735	-		Psyr_2667	0.28	+0.0
3,237,881	+		Psyr_2667	0.33	+0.7
3,237,881	+		Psyr_2667	0.33	-0.1
3,237,882	-		Psyr_2667	0.33	-0.1
3,238,124	+		Psyr_2667	0.42	-1.1
3,238,386	+		Psyr_2667	0.51	+1.2
3,238,387	-		Psyr_2667	0.51	-0.0
3,238,387	-		Psyr_2667	0.51	-1.6
3,238,387	-		Psyr_2667	0.51	-0.3
3,238,389	+		Psyr_2667	0.51	+1.1
3,238,451	-		Psyr_2667	0.53	-0.3
3,238,724	-		Psyr_2667	0.63	-0.6
3,238,872	+		Psyr_2667	0.68	-0.2
3,238,872	+		Psyr_2667	0.68	+0.7
3,239,018	+		Psyr_2667	0.73	-1.1
3,239,021	+		Psyr_2667	0.73	-1.3
3,239,108	+		Psyr_2667	0.76	-0.9
3,239,245	-		Psyr_2667	0.81	-1.6
3,239,245	-		Psyr_2667	0.81	+0.5
3,239,382	+		Psyr_2667	0.85	-0.7
3,239,483	-		Psyr_2667	0.89	+0.3
3,239,525	+				+0.7
3,239,525	+				-0.7
3,239,525	+				-1.0
3,239,526	-				+1.3
3,239,526	-				+0.3
3,239,526	-				+0.1
3,239,531	-				+0.7
3,239,569	-				+0.2
3,239,688	+				-0.0
3,239,689	-				-1.0
3,239,689	-				+0.1
3,239,715	+				-1.1
3,239,715	+				+1.1
3,239,715	+				-1.1
3,239,716	-				+0.4
3,239,716	-				+0.7
3,239,718	-				+1.4
3,239,718	-				-0.2
3,239,718	-				+0.2
3,239,802	+				+0.4
3,239,848	+				+0.6
3,239,848	+				-0.5
3,239,940	+				-0.3
3,240,026	+		Psyr_2668	0.16	-0.3
3,240,026	+		Psyr_2668	0.16	-0.1
3,240,026	+		Psyr_2668	0.16	+0.2
3,240,026	+		Psyr_2668	0.16	+1.0
3,240,030	+		Psyr_2668	0.17	+0.4
3,240,030	+		Psyr_2668	0.17	+1.7
3,240,030	+		Psyr_2668	0.17	-0.3
3,240,030	+		Psyr_2668	0.17	+0.7
3,240,030	+		Psyr_2668	0.17	-0.4
3,240,030	+		Psyr_2668	0.17	+0.1
3,240,030	+		Psyr_2668	0.17	-1.3
3,240,030	+		Psyr_2668	0.17	+0.8
3,240,030	+		Psyr_2668	0.17	-0.2
3,240,030	+		Psyr_2668	0.17	+1.2
3,240,426	-		Psyr_2668	0.81	-2.1
3,240,484	-				+1.1
3,240,536	+				+0.4
3,240,536	+				+0.0
3,240,536	+				-0.9
3,240,536	+				+1.0
3,240,536	+				-0.3
3,240,536	+				+1.1
3,240,536	+				-0.1
3,240,537	-				+0.0
3,240,537	-				-0.9
3,240,540	+				-1.5
3,240,541	-				-0.5