Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0395

Experiment: KB with Nitrofurantoin 31.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0394 and Psyr_0395 are separated by 66 nucleotidesPsyr_0395 and Psyr_0396 are separated by 367 nucleotides Psyr_0394: Psyr_0394 - Heat shock protein HslU, at 420,627 to 421,964 _0394 Psyr_0395: Psyr_0395 - HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B, at 422,031 to 422,609 _0395 Psyr_0396: Psyr_0396 - Sporulation related protein, at 422,977 to 423,672 _0396 Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1at 421.068 kb on - strand, within Psyr_0394at 421.068 kb on - strand, within Psyr_0394at 421.296 kb on + strand, within Psyr_0394at 421.680 kb on + strand, within Psyr_0394at 421.680 kb on + strand, within Psyr_0394at 421.681 kb on - strand, within Psyr_0394at 421.696 kb on + strand, within Psyr_0394at 421.824 kb on + strand, within Psyr_0394at 421.824 kb on + strand, within Psyr_0394at 421.824 kb on + strand, within Psyr_0394at 421.825 kb on - strand, within Psyr_0394at 421.916 kb on + strandat 421.920 kb on - strandat 422.446 kb on + strand, within Psyr_0395at 422.446 kb on + strand, within Psyr_0395at 422.457 kb on + strand, within Psyr_0395at 422.528 kb on + strand, within Psyr_0395at 422.609 kb on + strandat 422.627 kb on + strandat 422.627 kb on + strandat 422.628 kb on - strandat 422.666 kb on - strandat 422.666 kb on - strandat 422.666 kb on - strandat 422.774 kb on + strandat 422.775 kb on - strandat 422.842 kb on - strandat 422.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 31.25 ug/ml
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421,068 - Psyr_0394 0.33 -1.3
421,068 - Psyr_0394 0.33 +1.1
421,296 + Psyr_0394 0.50 +0.2
421,680 + Psyr_0394 0.79 +0.8
421,680 + Psyr_0394 0.79 -0.7
421,681 - Psyr_0394 0.79 +1.2
421,696 + Psyr_0394 0.80 -2.2
421,824 + Psyr_0394 0.89 +0.7
421,824 + Psyr_0394 0.89 -1.6
421,824 + Psyr_0394 0.89 +0.2
421,825 - Psyr_0394 0.90 +0.6
421,916 + -0.2
421,920 - -0.3
422,446 + Psyr_0395 0.72 -1.2
422,446 + Psyr_0395 0.72 +0.3
422,457 + Psyr_0395 0.74 +0.3
422,528 + Psyr_0395 0.86 +1.2
422,609 + +0.5
422,627 + -0.9
422,627 + +0.9
422,628 - -0.3
422,666 - -1.6
422,666 - -0.8
422,666 - -0.1
422,774 + -1.1
422,775 - +0.2
422,842 - -0.6
422,900 + -0.7

Or see this region's nucleotide sequence