Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25175 and PFLU_RS25180 overlap by 4 nucleotides PFLU_RS25180 and PFLU_RS25185 are separated by 53 nucleotides PFLU_RS25185 and PFLU_RS25190 are separated by 70 nucleotides PFLU_RS25190 and PFLU_RS25195 are separated by 50 nucleotides
PFLU_RS25175: PFLU_RS25175 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 5,627,999 to 5,628,253
_RS25175
PFLU_RS25180: PFLU_RS25180 - Txe/YoeB family addiction module toxin, at 5,628,250 to 5,628,504
_RS25180
PFLU_RS25185: PFLU_RS25185 - hypothetical protein, at 5,628,558 to 5,629,061
_RS25185
PFLU_RS25190: PFLU_RS25190 - hypothetical protein, at 5,629,132 to 5,629,851
_RS25190
PFLU_RS25195: PFLU_RS25195 - pyridoxal phosphate-dependent aminotransferase, at 5,629,902 to 5,630,996
_RS25195
Position (kb) 5629
5630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5628.155 kb on + strand, within PFLU_RS25175 at 5628.155 kb on + strand, within PFLU_RS25175 at 5628.156 kb on - strand, within PFLU_RS25175 at 5628.257 kb on + strand at 5628.257 kb on + strand at 5628.257 kb on + strand at 5628.258 kb on - strand at 5628.258 kb on - strand at 5628.286 kb on + strand, within PFLU_RS25180 at 5628.286 kb on + strand, within PFLU_RS25180 at 5628.287 kb on - strand, within PFLU_RS25180 at 5628.287 kb on - strand, within PFLU_RS25180 at 5628.287 kb on - strand, within PFLU_RS25180 at 5628.327 kb on + strand, within PFLU_RS25180 at 5628.328 kb on - strand, within PFLU_RS25180 at 5628.430 kb on - strand, within PFLU_RS25180 at 5628.449 kb on + strand, within PFLU_RS25180 at 5628.449 kb on + strand, within PFLU_RS25180 at 5628.449 kb on + strand, within PFLU_RS25180 at 5628.449 kb on + strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.450 kb on - strand, within PFLU_RS25180 at 5628.451 kb on + strand, within PFLU_RS25180 at 5628.452 kb on - strand, within PFLU_RS25180 at 5628.452 kb on - strand, within PFLU_RS25180 at 5628.458 kb on + strand, within PFLU_RS25180 at 5628.458 kb on + strand, within PFLU_RS25180 at 5628.458 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.459 kb on - strand, within PFLU_RS25180 at 5628.473 kb on + strand, within PFLU_RS25180 at 5628.473 kb on + strand, within PFLU_RS25180 at 5628.473 kb on + strand, within PFLU_RS25180 at 5628.473 kb on + strand, within PFLU_RS25180 at 5628.474 kb on - strand, within PFLU_RS25180 at 5628.474 kb on - strand, within PFLU_RS25180 at 5628.474 kb on - strand, within PFLU_RS25180 at 5628.499 kb on + strand at 5628.499 kb on + strand at 5628.499 kb on + strand at 5628.499 kb on + strand at 5628.499 kb on + strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.500 kb on - strand at 5628.502 kb on + strand at 5628.502 kb on + strand at 5628.502 kb on + strand at 5628.502 kb on + strand at 5628.502 kb on + strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.503 kb on - strand at 5628.566 kb on + strand at 5628.594 kb on + strand at 5628.594 kb on + strand at 5628.595 kb on - strand at 5628.603 kb on + strand at 5628.604 kb on - strand at 5628.618 kb on + strand, within PFLU_RS25185 at 5628.618 kb on + strand, within PFLU_RS25185 at 5628.618 kb on + strand, within PFLU_RS25185 at 5628.619 kb on - strand, within PFLU_RS25185 at 5628.619 kb on - strand, within PFLU_RS25185 at 5628.619 kb on - strand, within PFLU_RS25185 at 5628.619 kb on - strand, within PFLU_RS25185 at 5628.619 kb on - strand, within PFLU_RS25185 at 5628.621 kb on + strand, within PFLU_RS25185 at 5628.888 kb on + strand, within PFLU_RS25185 at 5628.888 kb on + strand, within PFLU_RS25185 at 5628.888 kb on + strand, within PFLU_RS25185 at 5628.888 kb on + strand, within PFLU_RS25185 at 5628.889 kb on - strand, within PFLU_RS25185 at 5628.889 kb on - strand, within PFLU_RS25185 at 5628.889 kb on - strand, within PFLU_RS25185 at 5628.889 kb on - strand, within PFLU_RS25185 at 5628.891 kb on + strand, within PFLU_RS25185 at 5628.891 kb on + strand, within PFLU_RS25185 at 5628.891 kb on + strand, within PFLU_RS25185 at 5628.892 kb on - strand, within PFLU_RS25185 at 5628.892 kb on - strand, within PFLU_RS25185 at 5628.901 kb on - strand, within PFLU_RS25185 at 5628.913 kb on + strand, within PFLU_RS25185 at 5628.914 kb on - strand, within PFLU_RS25185 at 5628.914 kb on - strand, within PFLU_RS25185 at 5628.914 kb on - strand, within PFLU_RS25185 at 5628.914 kb on - strand, within PFLU_RS25185 at 5628.914 kb on - strand, within PFLU_RS25185 at 5629.112 kb on - strand at 5629.112 kb on - strand at 5629.119 kb on + strand at 5629.120 kb on - strand at 5629.120 kb on - strand at 5629.144 kb on + strand at 5629.145 kb on - strand at 5629.145 kb on - strand at 5629.360 kb on + strand, within PFLU_RS25190 at 5629.361 kb on - strand, within PFLU_RS25190 at 5629.361 kb on - strand, within PFLU_RS25190 at 5629.361 kb on - strand, within PFLU_RS25190 at 5629.831 kb on + strand at 5629.832 kb on - strand at 5629.849 kb on + strand at 5629.849 kb on + strand at 5629.850 kb on - strand at 5629.866 kb on + strand at 5629.866 kb on + strand at 5629.866 kb on + strand at 5629.867 kb on - strand at 5629.867 kb on - strand at 5629.867 kb on - strand at 5629.867 kb on - strand at 5629.867 kb on - strand at 5629.968 kb on + strand at 5629.968 kb on + strand at 5629.969 kb on - strand at 5630.320 kb on + strand, within PFLU_RS25195 at 5630.320 kb on + strand, within PFLU_RS25195 at 5630.406 kb on - strand, within PFLU_RS25195 at 5630.406 kb on - strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.407 kb on + strand, within PFLU_RS25195 at 5630.408 kb on - strand, within PFLU_RS25195 at 5630.408 kb on - strand, within PFLU_RS25195 at 5630.408 kb on - strand, within PFLU_RS25195 at 5630.408 kb on - strand, within PFLU_RS25195 at 5630.408 kb on - strand, within PFLU_RS25195 at 5630.515 kb on + strand, within PFLU_RS25195 at 5630.515 kb on + strand, within PFLU_RS25195 at 5630.515 kb on + strand, within PFLU_RS25195 at 5630.515 kb on + strand, within PFLU_RS25195 at 5630.516 kb on - strand, within PFLU_RS25195 at 5630.638 kb on + strand, within PFLU_RS25195 at 5630.639 kb on - strand, within PFLU_RS25195 at 5630.639 kb on - strand, within PFLU_RS25195 at 5630.655 kb on + strand, within PFLU_RS25195 at 5630.696 kb on - strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.782 kb on + strand, within PFLU_RS25195 at 5630.783 kb on - strand, within PFLU_RS25195 at 5630.783 kb on - strand, within PFLU_RS25195 at 5630.783 kb on - strand, within PFLU_RS25195 at 5630.783 kb on - strand, within PFLU_RS25195 at 5630.783 kb on - strand, within PFLU_RS25195 at 5630.795 kb on - strand, within PFLU_RS25195 at 5630.795 kb on - strand, within PFLU_RS25195
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,628,155 + PFLU_RS25175 0.61 -0.2 5,628,155 + PFLU_RS25175 0.61 +0.6 5,628,156 - PFLU_RS25175 0.62 +0.8 5,628,257 + -0.7 5,628,257 + +0.4 5,628,257 + -0.7 5,628,258 - +0.2 5,628,258 - +0.3 5,628,286 + PFLU_RS25180 0.14 -1.0 5,628,286 + PFLU_RS25180 0.14 +0.1 5,628,287 - PFLU_RS25180 0.15 -0.0 5,628,287 - PFLU_RS25180 0.15 -0.1 5,628,287 - PFLU_RS25180 0.15 -0.6 5,628,327 + PFLU_RS25180 0.30 +0.7 5,628,328 - PFLU_RS25180 0.31 +0.5 5,628,430 - PFLU_RS25180 0.71 -1.5 5,628,449 + PFLU_RS25180 0.78 +0.1 5,628,449 + PFLU_RS25180 0.78 +1.3 5,628,449 + PFLU_RS25180 0.78 +1.0 5,628,449 + PFLU_RS25180 0.78 +0.1 5,628,450 - PFLU_RS25180 0.78 -0.3 5,628,450 - PFLU_RS25180 0.78 +0.1 5,628,450 - PFLU_RS25180 0.78 +0.0 5,628,450 - PFLU_RS25180 0.78 -2.1 5,628,450 - PFLU_RS25180 0.78 +0.2 5,628,450 - PFLU_RS25180 0.78 -0.9 5,628,450 - PFLU_RS25180 0.78 +1.1 5,628,450 - PFLU_RS25180 0.78 -0.9 5,628,450 - PFLU_RS25180 0.78 +1.4 5,628,450 - PFLU_RS25180 0.78 -1.5 5,628,450 - PFLU_RS25180 0.78 +0.6 5,628,451 + PFLU_RS25180 0.79 +0.3 5,628,452 - PFLU_RS25180 0.79 -1.1 5,628,452 - PFLU_RS25180 0.79 -0.0 5,628,458 + PFLU_RS25180 0.82 +0.8 5,628,458 + PFLU_RS25180 0.82 +0.4 5,628,458 - PFLU_RS25180 0.82 -0.1 5,628,459 - PFLU_RS25180 0.82 +0.3 5,628,459 - PFLU_RS25180 0.82 +0.4 5,628,459 - PFLU_RS25180 0.82 -1.7 5,628,459 - PFLU_RS25180 0.82 -0.5 5,628,459 - PFLU_RS25180 0.82 -0.3 5,628,459 - PFLU_RS25180 0.82 -0.7 5,628,473 + PFLU_RS25180 0.87 +0.2 5,628,473 + PFLU_RS25180 0.87 +1.1 5,628,473 + PFLU_RS25180 0.87 -0.0 5,628,473 + PFLU_RS25180 0.87 -0.2 5,628,474 - PFLU_RS25180 0.88 +0.3 5,628,474 - PFLU_RS25180 0.88 -0.1 5,628,474 - PFLU_RS25180 0.88 -0.1 5,628,499 + -0.9 5,628,499 + -0.3 5,628,499 + -0.2 5,628,499 + +0.3 5,628,499 + -0.1 5,628,500 - +1.0 5,628,500 - -0.9 5,628,500 - +0.7 5,628,500 - -1.0 5,628,500 - -0.0 5,628,500 - +1.2 5,628,500 - +0.2 5,628,502 + +0.2 5,628,502 + +0.7 5,628,502 + +0.8 5,628,502 + +0.5 5,628,502 + +0.6 5,628,503 - -0.2 5,628,503 - +0.3 5,628,503 - +0.9 5,628,503 - +0.4 5,628,503 - +0.4 5,628,503 - +0.7 5,628,503 - -0.0 5,628,503 - +0.2 5,628,566 + -2.0 5,628,594 + -0.5 5,628,594 + -1.2 5,628,595 - +1.3 5,628,603 + +1.1 5,628,604 - -0.4 5,628,618 + PFLU_RS25185 0.12 +0.3 5,628,618 + PFLU_RS25185 0.12 +0.0 5,628,618 + PFLU_RS25185 0.12 +0.5 5,628,619 - PFLU_RS25185 0.12 +0.5 5,628,619 - PFLU_RS25185 0.12 -1.2 5,628,619 - PFLU_RS25185 0.12 -2.0 5,628,619 - PFLU_RS25185 0.12 +0.6 5,628,619 - PFLU_RS25185 0.12 +0.0 5,628,621 + PFLU_RS25185 0.12 -0.1 5,628,888 + PFLU_RS25185 0.65 +0.5 5,628,888 + PFLU_RS25185 0.65 +0.3 5,628,888 + PFLU_RS25185 0.65 +0.2 5,628,888 + PFLU_RS25185 0.65 +0.4 5,628,889 - PFLU_RS25185 0.66 +0.4 5,628,889 - PFLU_RS25185 0.66 -0.9 5,628,889 - PFLU_RS25185 0.66 +0.1 5,628,889 - PFLU_RS25185 0.66 +0.6 5,628,891 + PFLU_RS25185 0.66 -1.2 5,628,891 + PFLU_RS25185 0.66 -1.5 5,628,891 + PFLU_RS25185 0.66 +1.4 5,628,892 - PFLU_RS25185 0.66 -2.2 5,628,892 - PFLU_RS25185 0.66 -0.1 5,628,901 - PFLU_RS25185 0.68 +0.1 5,628,913 + PFLU_RS25185 0.70 -1.1 5,628,914 - PFLU_RS25185 0.71 +0.7 5,628,914 - PFLU_RS25185 0.71 +0.1 5,628,914 - PFLU_RS25185 0.71 -1.2 5,628,914 - PFLU_RS25185 0.71 +0.5 5,628,914 - PFLU_RS25185 0.71 +0.4 5,629,112 - +0.6 5,629,112 - -0.4 5,629,119 + +1.0 5,629,120 - +0.8 5,629,120 - +0.5 5,629,144 + +0.4 5,629,145 - +0.7 5,629,145 - +0.2 5,629,360 + PFLU_RS25190 0.32 +1.1 5,629,361 - PFLU_RS25190 0.32 +0.5 5,629,361 - PFLU_RS25190 0.32 +0.5 5,629,361 - PFLU_RS25190 0.32 -0.3 5,629,831 + +0.9 5,629,832 - +0.1 5,629,849 + +0.1 5,629,849 + +0.2 5,629,850 - -0.6 5,629,866 + -1.0 5,629,866 + +0.5 5,629,866 + +0.1 5,629,867 - +0.4 5,629,867 - -0.5 5,629,867 - -0.4 5,629,867 - +0.9 5,629,867 - -2.0 5,629,968 + -0.2 5,629,968 + -0.5 5,629,969 - +0.2 5,630,320 + PFLU_RS25195 0.38 +0.5 5,630,320 + PFLU_RS25195 0.38 -0.0 5,630,406 - PFLU_RS25195 0.46 +0.5 5,630,406 - PFLU_RS25195 0.46 +0.1 5,630,407 + PFLU_RS25195 0.46 -0.6 5,630,407 + PFLU_RS25195 0.46 -0.1 5,630,407 + PFLU_RS25195 0.46 -0.5 5,630,407 + PFLU_RS25195 0.46 +0.5 5,630,407 + PFLU_RS25195 0.46 +0.4 5,630,407 + PFLU_RS25195 0.46 -0.9 5,630,408 - PFLU_RS25195 0.46 -1.3 5,630,408 - PFLU_RS25195 0.46 +0.7 5,630,408 - PFLU_RS25195 0.46 +0.0 5,630,408 - PFLU_RS25195 0.46 +1.5 5,630,408 - PFLU_RS25195 0.46 +0.0 5,630,515 + PFLU_RS25195 0.56 -0.2 5,630,515 + PFLU_RS25195 0.56 +0.2 5,630,515 + PFLU_RS25195 0.56 +0.7 5,630,515 + PFLU_RS25195 0.56 +1.0 5,630,516 - PFLU_RS25195 0.56 +0.2 5,630,638 + PFLU_RS25195 0.67 -1.7 5,630,639 - PFLU_RS25195 0.67 -0.3 5,630,639 - PFLU_RS25195 0.67 +0.1 5,630,655 + PFLU_RS25195 0.69 -0.8 5,630,696 - PFLU_RS25195 0.73 -0.4 5,630,782 + PFLU_RS25195 0.80 +0.7 5,630,782 + PFLU_RS25195 0.80 -1.0 5,630,782 + PFLU_RS25195 0.80 +0.6 5,630,782 + PFLU_RS25195 0.80 -0.5 5,630,782 + PFLU_RS25195 0.80 -0.8 5,630,782 + PFLU_RS25195 0.80 +1.1 5,630,782 + PFLU_RS25195 0.80 -1.0 5,630,782 + PFLU_RS25195 0.80 +0.5 5,630,782 + PFLU_RS25195 0.80 -1.3 5,630,782 + PFLU_RS25195 0.80 -0.2 5,630,782 + PFLU_RS25195 0.80 +0.1 5,630,782 + PFLU_RS25195 0.80 -0.3 5,630,782 + PFLU_RS25195 0.80 -0.3 5,630,783 - PFLU_RS25195 0.80 -0.0 5,630,783 - PFLU_RS25195 0.80 +0.8 5,630,783 - PFLU_RS25195 0.80 +0.8 5,630,783 - PFLU_RS25195 0.80 +0.5 5,630,783 - PFLU_RS25195 0.80 -0.5 5,630,795 - PFLU_RS25195 0.82 +1.8 5,630,795 - PFLU_RS25195 0.82 -0.1
Or see this region's nucleotide sequence