Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25070

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,606,418	+		PFLU_RS25060	0.45	-0.8
5,606,452	+		PFLU_RS25060	0.47	-0.7
5,606,461	+		PFLU_RS25060	0.48	-1.0
5,606,462	-		PFLU_RS25060	0.48	+0.5
5,606,462	-		PFLU_RS25060	0.48	-0.4
5,606,599	-		PFLU_RS25060	0.60	-0.2
5,606,644	+		PFLU_RS25060	0.64	-1.9
5,606,690	-		PFLU_RS25060	0.68	+0.8
5,606,701	+		PFLU_RS25060	0.69	+0.0
5,606,713	-		PFLU_RS25060	0.70	-0.9
5,606,752	+		PFLU_RS25060	0.73	+0.2
5,606,752	+		PFLU_RS25060	0.73	+1.1
5,606,752	+		PFLU_RS25060	0.73	+1.0
5,606,752	+		PFLU_RS25060	0.73	-0.7
5,606,752	+		PFLU_RS25060	0.73	-0.1
5,606,752	+		PFLU_RS25060	0.73	+0.0
5,606,752	+		PFLU_RS25060	0.73	-1.0
5,606,752	+		PFLU_RS25060	0.73	-0.8
5,606,752	+		PFLU_RS25060	0.73	-0.1
5,606,752	+		PFLU_RS25060	0.73	+1.4
5,606,752	+		PFLU_RS25060	0.73	+1.0
5,606,753	-		PFLU_RS25060	0.73	-0.4
5,606,753	-		PFLU_RS25060	0.73	-0.1
5,606,753	-		PFLU_RS25060	0.73	+1.8
5,606,753	-		PFLU_RS25060	0.73	-0.7
5,606,753	-		PFLU_RS25060	0.73	+0.2
5,606,762	+		PFLU_RS25060	0.74	-0.5
5,606,762	+		PFLU_RS25060	0.74	-0.5
5,606,763	-		PFLU_RS25060	0.74	+1.5
5,606,763	-		PFLU_RS25060	0.74	-0.4
5,606,784	+		PFLU_RS25060	0.76	-0.6
5,606,784	+		PFLU_RS25060	0.76	+1.1
5,606,784	+		PFLU_RS25060	0.76	-0.4
5,606,785	-		PFLU_RS25060	0.76	-1.8
5,606,785	-		PFLU_RS25060	0.76	+0.7
5,606,785	-		PFLU_RS25060	0.76	-0.1
5,606,803	+		PFLU_RS25060	0.78	-1.5
5,606,831	+		PFLU_RS25060	0.80	+0.6
5,606,831	+		PFLU_RS25060	0.80	-0.4
5,606,831	+		PFLU_RS25060	0.80	+0.8
5,606,831	+		PFLU_RS25060	0.80	+0.0
5,606,831	+		PFLU_RS25060	0.80	+0.3
5,606,831	+		PFLU_RS25060	0.80	-0.1
5,606,831	+		PFLU_RS25060	0.80	+0.4
5,606,831	+		PFLU_RS25060	0.80	-0.7
5,606,831	+		PFLU_RS25060	0.80	+0.3
5,606,831	+		PFLU_RS25060	0.80	+0.4
5,606,831	+		PFLU_RS25060	0.80	-0.7
5,606,831	+		PFLU_RS25060	0.80	+0.2
5,606,831	+		PFLU_RS25060	0.80	+0.0
5,606,831	+		PFLU_RS25060	0.80	+0.5
5,606,832	-		PFLU_RS25060	0.80	+0.5
5,606,832	-		PFLU_RS25060	0.80	-0.6
5,606,832	-		PFLU_RS25060	0.80	-0.9
5,606,832	-		PFLU_RS25060	0.80	-0.6
5,606,910	-		PFLU_RS25060	0.87	+0.6
5,606,931	-		PFLU_RS25060	0.89	+0.7
5,607,010	+				+1.2
5,607,010	+				-0.8
5,607,010	+				-0.2
5,607,010	+				+0.7
5,607,011	-				-0.4
5,607,011	-				-1.2
5,607,011	-				-0.1
5,607,011	-				-0.1
5,607,012	+				+1.6
5,607,013	-				+0.1
5,607,013	-				+0.5
5,607,051	+				-0.1
5,607,052	-				+0.3
5,607,052	-				+0.0
5,607,055	+				+0.2
5,607,055	+				-0.6
5,607,055	+				+0.8
5,607,056	-				+0.5
5,607,056	-				-0.5
5,607,056	-				-1.6
5,607,061	+				-1.1
5,607,062	-				+0.2
5,607,120	+		PFLU_RS25065	0.14	-0.6
5,607,121	-		PFLU_RS25065	0.15	+0.9
5,607,121	-		PFLU_RS25065	0.15	+0.3
5,607,142	+		PFLU_RS25065	0.22	+0.1
5,607,142	+		PFLU_RS25065	0.22	-0.7
5,607,143	-		PFLU_RS25065	0.22	+1.4
5,607,143	-		PFLU_RS25065	0.22	+1.9
5,607,211	+		PFLU_RS25065	0.46	+1.2
5,607,211	+		PFLU_RS25065	0.46	+0.4
5,607,211	+		PFLU_RS25065	0.46	+0.4
5,607,212	-		PFLU_RS25065	0.46	+0.3
5,607,212	-		PFLU_RS25065	0.46	-1.5
5,607,212	-		PFLU_RS25065	0.46	+0.3
5,607,212	-		PFLU_RS25065	0.46	+0.1
5,607,221	+		PFLU_RS25065	0.49	+0.4
5,607,221	+		PFLU_RS25065	0.49	+1.8
5,607,221	+		PFLU_RS25065	0.49	-0.2
5,607,221	+		PFLU_RS25065	0.49	-0.0
5,607,221	+		PFLU_RS25065	0.49	-1.4
5,607,221	+		PFLU_RS25065	0.49	+0.6
5,607,222	-		PFLU_RS25065	0.50	+0.8
5,607,238	-		PFLU_RS25065	0.55	-0.0
5,607,246	+		PFLU_RS25065	0.58	-1.2
5,607,253	-		PFLU_RS25065	0.60	-0.9
5,607,263	-		PFLU_RS25065	0.64	-0.0
5,607,298	+		PFLU_RS25065	0.76	+0.4
5,607,299	-		PFLU_RS25065	0.76	+0.9
5,607,364	+				+0.1
5,607,365	-				+0.1
5,607,365	-				-0.2
5,607,365	-				+0.2
5,607,365	-				-0.6
5,607,365	-				+1.1
5,607,517	+		PFLU_RS25070	0.28	-0.8
5,607,517	+		PFLU_RS25070	0.28	+1.6
5,607,517	+		PFLU_RS25070	0.28	-0.9
5,607,517	+		PFLU_RS25070	0.28	+0.1
5,607,518	-		PFLU_RS25070	0.29	-0.3
5,607,518	-		PFLU_RS25070	0.29	-0.4
5,607,542	+		PFLU_RS25070	0.34	-0.5
5,607,543	-		PFLU_RS25070	0.34	-0.2
5,607,543	-		PFLU_RS25070	0.34	+1.4
5,607,639	+		PFLU_RS25070	0.54	-1.2
5,607,640	-		PFLU_RS25070	0.55	-1.0
5,607,680	+		PFLU_RS25070	0.63	+1.3
5,607,680	+		PFLU_RS25070	0.63	-0.1
5,607,680	+		PFLU_RS25070	0.63	+0.3
5,607,681	-		PFLU_RS25070	0.63	+0.9
5,607,681	-		PFLU_RS25070	0.63	+1.4
5,607,681	-		PFLU_RS25070	0.63	-2.1
5,607,681	-		PFLU_RS25070	0.63	-0.6
5,607,681	-		PFLU_RS25070	0.63	-0.3
5,607,704	+		PFLU_RS25070	0.68	-0.7
5,607,704	+		PFLU_RS25070	0.68	-0.3
5,607,704	+		PFLU_RS25070	0.68	-0.2
5,607,704	+		PFLU_RS25070	0.68	-0.7
5,607,705	-		PFLU_RS25070	0.68	-2.6
5,607,705	-		PFLU_RS25070	0.68	+0.7
5,607,705	-		PFLU_RS25070	0.68	-1.2
5,607,705	-		PFLU_RS25070	0.68	-0.3
5,607,705	-		PFLU_RS25070	0.68	-0.4
5,607,705	-		PFLU_RS25070	0.68	+0.6
5,607,707	+		PFLU_RS25070	0.69	+0.7
5,607,707	+		PFLU_RS25070	0.69	+0.1
5,607,707	+		PFLU_RS25070	0.69	-0.3
5,607,707	+		PFLU_RS25070	0.69	-1.5
5,607,707	+		PFLU_RS25070	0.69	-0.0
5,607,708	-		PFLU_RS25070	0.69	+1.0
5,607,708	-		PFLU_RS25070	0.69	-0.9
5,607,708	-		PFLU_RS25070	0.69	+0.2
5,607,708	-		PFLU_RS25070	0.69	+1.2
5,607,708	-		PFLU_RS25070	0.69	+1.0
5,607,708	-		PFLU_RS25070	0.69	+0.3
5,607,708	-		PFLU_RS25070	0.69	+1.8
5,607,719	+		PFLU_RS25070	0.71	+0.4
5,607,719	+		PFLU_RS25070	0.71	+0.0
5,607,719	+		PFLU_RS25070	0.71	-0.5
5,607,719	+		PFLU_RS25070	0.71	+0.8
5,607,719	+		PFLU_RS25070	0.71	-0.7
5,607,719	+		PFLU_RS25070	0.71	-0.2
5,607,719	+		PFLU_RS25070	0.71	+1.1
5,607,720	-		PFLU_RS25070	0.72	+0.0
5,607,720	-		PFLU_RS25070	0.72	-0.0
5,607,720	-		PFLU_RS25070	0.72	-1.3
5,607,720	-		PFLU_RS25070	0.72	-0.0
5,607,720	-		PFLU_RS25070	0.72	-1.1
5,607,720	-		PFLU_RS25070	0.72	-0.1
5,607,720	-		PFLU_RS25070	0.72	-1.5
5,607,720	-		PFLU_RS25070	0.72	-0.0
5,607,822	+				+1.0
5,607,822	+				-0.4
5,607,822	+				-0.2
5,607,823	-				-0.5
5,607,823	-				+0.5
5,607,823	-				+0.2
5,607,823	-				-1.8
5,607,868	+				+0.1
5,607,869	-				+0.1
5,607,924	+		PFLU_RS25075	0.12	+0.4
5,607,924	+		PFLU_RS25075	0.12	-0.7
5,607,924	+		PFLU_RS25075	0.12	-0.1
5,607,924	+		PFLU_RS25075	0.12	+0.5
5,607,924	+		PFLU_RS25075	0.12	-0.8
5,607,924	+		PFLU_RS25075	0.12	-0.5
5,607,924	+		PFLU_RS25075	0.12	+1.2
5,607,924	+		PFLU_RS25075	0.12	-0.0
5,607,924	+		PFLU_RS25075	0.12	-0.7
5,607,924	+		PFLU_RS25075	0.12	+0.3
5,607,924	+		PFLU_RS25075	0.12	+0.7
5,607,924	+		PFLU_RS25075	0.12	+0.3
5,607,924	+		PFLU_RS25075	0.12	-0.0
5,607,924	+		PFLU_RS25075	0.12	+1.4
5,607,924	+		PFLU_RS25075	0.12	+1.7
5,607,924	+		PFLU_RS25075	0.12	-0.0
5,607,924	+		PFLU_RS25075	0.12	-0.5
5,607,925	-		PFLU_RS25075	0.12	+0.0
5,607,925	-		PFLU_RS25075	0.12	-0.0
5,607,925	-		PFLU_RS25075	0.12	-0.1
5,607,925	-		PFLU_RS25075	0.12	-0.7
5,607,925	-		PFLU_RS25075	0.12	-0.0
5,607,925	-		PFLU_RS25075	0.12	-1.2
5,607,925	-		PFLU_RS25075	0.12	+0.7
5,607,925	-		PFLU_RS25075	0.12	+0.5
5,607,925	-		PFLU_RS25075	0.12	-1.7
5,607,972	+		PFLU_RS25075	0.20	+0.8
5,607,972	+		PFLU_RS25075	0.20	+0.0
5,607,972	+		PFLU_RS25075	0.20	+1.6
5,608,000	+		PFLU_RS25075	0.25	-0.0
5,608,000	+		PFLU_RS25075	0.25	-0.3
5,608,000	+		PFLU_RS25075	0.25	-2.0
5,608,000	+		PFLU_RS25075	0.25	+1.2
5,608,001	-		PFLU_RS25075	0.25	-0.8
5,608,001	-		PFLU_RS25075	0.25	+0.2
5,608,001	-		PFLU_RS25075	0.25	-0.7
5,608,001	-		PFLU_RS25075	0.25	+0.4
5,608,023	+		PFLU_RS25075	0.29	-1.1
5,608,023	+		PFLU_RS25075	0.29	+0.6
5,608,023	+		PFLU_RS25075	0.29	+0.6
5,608,023	+		PFLU_RS25075	0.29	-0.1
5,608,023	+		PFLU_RS25075	0.29	-0.7
5,608,023	+		PFLU_RS25075	0.29	+0.8
5,608,023	+		PFLU_RS25075	0.29	+0.0
5,608,023	+		PFLU_RS25075	0.29	+0.1
5,608,024	-		PFLU_RS25075	0.29	-1.3
5,608,024	-		PFLU_RS25075	0.29	-0.7
5,608,024	-		PFLU_RS25075	0.29	-1.3
5,608,024	-		PFLU_RS25075	0.29	-0.5
5,608,024	-		PFLU_RS25075	0.29	-0.2
5,608,024	-		PFLU_RS25075	0.29	-1.3
5,608,024	-		PFLU_RS25075	0.29	+0.0
5,608,024	-		PFLU_RS25075	0.29	+0.2
5,608,024	-		PFLU_RS25075	0.29	-0.4
5,608,024	-		PFLU_RS25075	0.29	+0.4
5,608,024	-		PFLU_RS25075	0.29	+0.4
5,608,024	-		PFLU_RS25075	0.29	+0.6
5,608,026	+		PFLU_RS25075	0.30	+0.5
5,608,026	+		PFLU_RS25075	0.30	+0.0
5,608,026	+		PFLU_RS25075	0.30	+0.3
5,608,026	+		PFLU_RS25075	0.30	-0.5
5,608,026	+		PFLU_RS25075	0.30	+0.5
5,608,026	+		PFLU_RS25075	0.30	-1.5
5,608,026	+		PFLU_RS25075	0.30	-0.6
5,608,026	+		PFLU_RS25075	0.30	-0.5
5,608,026	+		PFLU_RS25075	0.30	+1.0
5,608,026	+		PFLU_RS25075	0.30	+0.2
5,608,026	+		PFLU_RS25075	0.30	+1.1
5,608,026	+		PFLU_RS25075	0.30	+0.6
5,608,026	+		PFLU_RS25075	0.30	+1.8
5,608,026	+		PFLU_RS25075	0.30	-0.8
5,608,026	+		PFLU_RS25075	0.30	+0.3
5,608,026	+		PFLU_RS25075	0.30	+0.9
5,608,026	+		PFLU_RS25075	0.30	-1.1
5,608,027	-		PFLU_RS25075	0.30	-0.2
5,608,027	-		PFLU_RS25075	0.30	-0.4
5,608,027	-		PFLU_RS25075	0.30	+0.4
5,608,027	-		PFLU_RS25075	0.30	+0.1
5,608,027	-		PFLU_RS25075	0.30	+0.7
5,608,027	-		PFLU_RS25075	0.30	+0.1
5,608,027	-		PFLU_RS25075	0.30	-0.2
5,608,027	-		PFLU_RS25075	0.30	-0.2
5,608,027	-		PFLU_RS25075	0.30	+0.5
5,608,027	-		PFLU_RS25075	0.30	-1.4
5,608,027	-		PFLU_RS25075	0.30	+0.7
5,608,027	-		PFLU_RS25075	0.30	-0.2
5,608,027	-		PFLU_RS25075	0.30	-2.0
5,608,027	-		PFLU_RS25075	0.30	-0.1
5,608,027	-		PFLU_RS25075	0.30	+0.1
5,608,027	-		PFLU_RS25075	0.30	-1.9
5,608,027	-		PFLU_RS25075	0.30	-3.0
5,608,027	-		PFLU_RS25075	0.30	-0.0
5,608,027	-		PFLU_RS25075	0.30	+0.5
5,608,027	-		PFLU_RS25075	0.30	+1.9
5,608,027	-		PFLU_RS25075	0.30	+0.3
5,608,027	-		PFLU_RS25075	0.30	+0.0
5,608,027	-		PFLU_RS25075	0.30	+0.5
5,608,027	-		PFLU_RS25075	0.30	+0.6
5,608,027	-		PFLU_RS25075	0.30	-0.6
5,608,027	-		PFLU_RS25075	0.30	-2.1
5,608,027	-		PFLU_RS25075	0.30	+1.1
5,608,029	+		PFLU_RS25075	0.30	-1.1
5,608,029	+		PFLU_RS25075	0.30	+0.5
5,608,029	+		PFLU_RS25075	0.30	+0.3
5,608,030	-		PFLU_RS25075	0.31	-1.1
5,608,488	+				-0.7
5,608,489	-				-1.0
5,608,654	+		PFLU_RS25080	0.10	+0.5
5,608,654	+		PFLU_RS25080	0.10	-0.8
5,608,655	-		PFLU_RS25080	0.10	-0.1
5,608,772	+		PFLU_RS25080	0.19	-0.1
5,608,773	-		PFLU_RS25080	0.19	+0.5