Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23900

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23890 and PFLU_RS23895 are separated by 144 nucleotidesPFLU_RS23895 and PFLU_RS23900 are separated by 176 nucleotidesPFLU_RS23900 and PFLU_RS23905 are separated by 12 nucleotidesPFLU_RS23905 and PFLU_RS23910 are separated by 0 nucleotides PFLU_RS23890: PFLU_RS23890 - pseudouridine synthase, at 5,354,287 to 5,355,498 _RS23890 PFLU_RS23895: PFLU_RS23895 - DUF1289 domain-containing protein, at 5,355,643 to 5,355,834 _RS23895 PFLU_RS23900: PFLU_RS23900 - SMC-Scp complex subunit ScpB, at 5,356,011 to 5,356,943 _RS23900 PFLU_RS23905: PFLU_RS23905 - segregation/condensation protein A, at 5,356,956 to 5,357,774 _RS23905 PFLU_RS23910: PFLU_RS23910 - threonylcarbamoyl-AMP synthase, at 5,357,775 to 5,358,404 _RS23910 Position (kb) 5356 5357Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.568 kb on + strandat 5355.568 kb on + strandat 5355.569 kb on - strandat 5355.593 kb on + strandat 5355.593 kb on + strandat 5355.594 kb on - strandat 5355.625 kb on + strandat 5355.626 kb on - strandat 5355.633 kb on - strandat 5355.711 kb on + strand, within PFLU_RS23895at 5356.003 kb on - strandat 5356.003 kb on - strandat 5356.003 kb on - strandat 5356.151 kb on + strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.437 kb on + strand, within PFLU_RS23900at 5356.438 kb on - strand, within PFLU_RS23900at 5356.669 kb on + strand, within PFLU_RS23900at 5356.670 kb on - strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5357.147 kb on + strand, within PFLU_RS23905at 5357.147 kb on + strand, within PFLU_RS23905at 5357.148 kb on - strand, within PFLU_RS23905at 5357.148 kb on - strand, within PFLU_RS23905at 5357.148 kb on - strand, within PFLU_RS23905at 5357.148 kb on - strand, within PFLU_RS23905at 5357.148 kb on - strand, within PFLU_RS23905at 5357.339 kb on + strand, within PFLU_RS23905at 5357.368 kb on + strand, within PFLU_RS23905at 5357.368 kb on + strand, within PFLU_RS23905at 5357.368 kb on + strand, within PFLU_RS23905at 5357.369 kb on - strand, within PFLU_RS23905at 5357.488 kb on + strand, within PFLU_RS23905at 5357.488 kb on + strand, within PFLU_RS23905at 5357.488 kb on + strand, within PFLU_RS23905at 5357.488 kb on + strand, within PFLU_RS23905at 5357.489 kb on - strand, within PFLU_RS23905at 5357.489 kb on - strand, within PFLU_RS23905at 5357.489 kb on - strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.533 kb on + strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.534 kb on - strand, within PFLU_RS23905at 5357.542 kb on + strand, within PFLU_RS23905at 5357.542 kb on + strand, within PFLU_RS23905at 5357.542 kb on + strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.543 kb on - strand, within PFLU_RS23905at 5357.605 kb on + strand, within PFLU_RS23905at 5357.605 kb on + strand, within PFLU_RS23905at 5357.605 kb on + strand, within PFLU_RS23905at 5357.605 kb on + strand, within PFLU_RS23905at 5357.605 kb on + strand, within PFLU_RS23905at 5357.606 kb on - strand, within PFLU_RS23905at 5357.606 kb on - strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.671 kb on + strand, within PFLU_RS23905at 5357.672 kb on - strand, within PFLU_RS23905at 5357.672 kb on - strand, within PFLU_RS23905at 5357.672 kb on - strand, within PFLU_RS23905at 5357.672 kb on - strand, within PFLU_RS23905at 5357.707 kb on + strandat 5357.707 kb on + strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strandat 5357.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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5,355,502 - +0.5
5,355,502 - -0.9
5,355,502 - -0.0
5,355,502 - -0.7
5,355,502 - -1.0
5,355,502 - -0.8
5,355,568 + -0.1
5,355,568 + -0.3
5,355,569 - +0.1
5,355,593 + +0.4
5,355,593 + +1.2
5,355,594 - -0.4
5,355,625 + -0.8
5,355,626 - -1.3
5,355,633 - -0.4
5,355,711 + PFLU_RS23895 0.35 +0.4
5,356,003 - -1.4
5,356,003 - -1.0
5,356,003 - -0.9
5,356,151 + PFLU_RS23900 0.15 -0.3
5,356,152 - PFLU_RS23900 0.15 -1.0
5,356,152 - PFLU_RS23900 0.15 -0.2
5,356,152 - PFLU_RS23900 0.15 +1.4
5,356,152 - PFLU_RS23900 0.15 -0.2
5,356,437 + PFLU_RS23900 0.46 -0.6
5,356,438 - PFLU_RS23900 0.46 -0.9
5,356,669 + PFLU_RS23900 0.71 +0.8
5,356,670 - PFLU_RS23900 0.71 +0.3
5,356,725 + PFLU_RS23900 0.77 +0.4
5,356,725 + PFLU_RS23900 0.77 +0.7
5,356,725 + PFLU_RS23900 0.77 +1.5
5,356,725 + PFLU_RS23900 0.77 -0.6
5,356,726 - PFLU_RS23900 0.77 -0.5
5,356,726 - PFLU_RS23900 0.77 -0.5
5,356,726 - PFLU_RS23900 0.77 -0.3
5,356,726 - PFLU_RS23900 0.77 -0.9
5,356,726 - PFLU_RS23900 0.77 +0.6
5,356,726 - PFLU_RS23900 0.77 +0.5
5,356,726 - PFLU_RS23900 0.77 -0.0
5,357,147 + PFLU_RS23905 0.23 -0.3
5,357,147 + PFLU_RS23905 0.23 -0.2
5,357,148 - PFLU_RS23905 0.23 -0.8
5,357,148 - PFLU_RS23905 0.23 +0.6
5,357,148 - PFLU_RS23905 0.23 +0.5
5,357,148 - PFLU_RS23905 0.23 +0.2
5,357,148 - PFLU_RS23905 0.23 +0.5
5,357,339 + PFLU_RS23905 0.47 +0.4
5,357,368 + PFLU_RS23905 0.50 -0.5
5,357,368 + PFLU_RS23905 0.50 +1.2
5,357,368 + PFLU_RS23905 0.50 -1.0
5,357,369 - PFLU_RS23905 0.50 -0.0
5,357,488 + PFLU_RS23905 0.65 -1.2
5,357,488 + PFLU_RS23905 0.65 +0.2
5,357,488 + PFLU_RS23905 0.65 +0.1
5,357,488 + PFLU_RS23905 0.65 +2.0
5,357,489 - PFLU_RS23905 0.65 -0.5
5,357,489 - PFLU_RS23905 0.65 +0.1
5,357,489 - PFLU_RS23905 0.65 -0.7
5,357,533 + PFLU_RS23905 0.70 -1.8
5,357,533 + PFLU_RS23905 0.70 +0.1
5,357,533 + PFLU_RS23905 0.70 -1.7
5,357,533 + PFLU_RS23905 0.70 +1.6
5,357,533 + PFLU_RS23905 0.70 -2.0
5,357,533 + PFLU_RS23905 0.70 -1.3
5,357,533 + PFLU_RS23905 0.70 +0.1
5,357,533 + PFLU_RS23905 0.70 +0.4
5,357,533 + PFLU_RS23905 0.70 +0.4
5,357,533 + PFLU_RS23905 0.70 -0.7
5,357,534 - PFLU_RS23905 0.71 +0.2
5,357,534 - PFLU_RS23905 0.71 -0.2
5,357,534 - PFLU_RS23905 0.71 +0.1
5,357,534 - PFLU_RS23905 0.71 -1.8
5,357,534 - PFLU_RS23905 0.71 -2.3
5,357,534 - PFLU_RS23905 0.71 +0.5
5,357,542 + PFLU_RS23905 0.72 +0.6
5,357,542 + PFLU_RS23905 0.72 +0.3
5,357,542 + PFLU_RS23905 0.72 -0.7
5,357,543 - PFLU_RS23905 0.72 +0.5
5,357,543 - PFLU_RS23905 0.72 -0.3
5,357,543 - PFLU_RS23905 0.72 +2.0
5,357,543 - PFLU_RS23905 0.72 -0.5
5,357,543 - PFLU_RS23905 0.72 +0.8
5,357,543 - PFLU_RS23905 0.72 +0.3
5,357,605 + PFLU_RS23905 0.79 -0.6
5,357,605 + PFLU_RS23905 0.79 +1.1
5,357,605 + PFLU_RS23905 0.79 -0.6
5,357,605 + PFLU_RS23905 0.79 +0.4
5,357,605 + PFLU_RS23905 0.79 +0.7
5,357,606 - PFLU_RS23905 0.79 -0.7
5,357,606 - PFLU_RS23905 0.79 -0.8
5,357,671 + PFLU_RS23905 0.87 +0.5
5,357,671 + PFLU_RS23905 0.87 +0.1
5,357,671 + PFLU_RS23905 0.87 -1.0
5,357,671 + PFLU_RS23905 0.87 +0.2
5,357,671 + PFLU_RS23905 0.87 +0.1
5,357,671 + PFLU_RS23905 0.87 -0.7
5,357,671 + PFLU_RS23905 0.87 +0.2
5,357,671 + PFLU_RS23905 0.87 +0.6
5,357,671 + PFLU_RS23905 0.87 -0.9
5,357,672 - PFLU_RS23905 0.87 -1.1
5,357,672 - PFLU_RS23905 0.87 -0.0
5,357,672 - PFLU_RS23905 0.87 +0.1
5,357,672 - PFLU_RS23905 0.87 -3.2
5,357,707 + +0.7
5,357,707 + -0.9
5,357,708 - -0.1
5,357,708 - +1.5
5,357,708 - -1.5
5,357,708 - -0.7
5,357,708 - -0.5
5,357,708 - +1.5
5,357,708 - -0.8
5,357,708 - +0.1

Or see this region's nucleotide sequence