Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21125

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,746,190	-		PFLU_RS21120	0.15	+0.6
4,746,484	+		PFLU_RS21120	0.48	-1.2
4,746,484	+		PFLU_RS21120	0.48	-0.2
4,746,484	+		PFLU_RS21120	0.48	-0.6
4,746,484	+		PFLU_RS21120	0.48	+0.8
4,746,485	-		PFLU_RS21120	0.48	+0.7
4,746,488	+		PFLU_RS21120	0.48	-0.4
4,746,488	+		PFLU_RS21120	0.48	-1.2
4,746,489	-		PFLU_RS21120	0.48	-0.8
4,746,489	-		PFLU_RS21120	0.48	-0.8
4,746,555	+		PFLU_RS21120	0.56	+0.1
4,746,572	-		PFLU_RS21120	0.58	+0.9
4,746,852	-		PFLU_RS21120	0.89	+0.2
4,746,852	-		PFLU_RS21120	0.89	-0.7
4,747,012	-				+0.0
4,747,015	+				-0.1
4,747,015	+				-0.6
4,747,016	-				-3.2
4,747,016	-				+0.2
4,747,016	-				+0.8
4,747,120	+				+0.0
4,747,120	+				-2.4
4,747,120	+				+0.5
4,747,121	-				-0.1
4,747,121	-				+0.1
4,747,121	-				+1.1
4,747,138	+				-0.6
4,747,300	+		PFLU_RS21125	0.22	-1.0
4,747,300	+		PFLU_RS21125	0.22	+0.0
4,747,300	+		PFLU_RS21125	0.22	+0.0
4,747,300	+		PFLU_RS21125	0.22	+0.0
4,747,300	+		PFLU_RS21125	0.22	+0.7
4,747,300	+		PFLU_RS21125	0.22	+0.8
4,747,300	+		PFLU_RS21125	0.22	+0.7
4,747,300	+		PFLU_RS21125	0.22	+0.8
4,747,300	+		PFLU_RS21125	0.22	+1.4
4,747,300	+		PFLU_RS21125	0.22	+0.2
4,747,300	+		PFLU_RS21125	0.22	-1.4
4,747,300	+		PFLU_RS21125	0.22	+1.0
4,747,300	+		PFLU_RS21125	0.22	+0.5
4,747,300	+		PFLU_RS21125	0.22	+0.9
4,747,300	+		PFLU_RS21125	0.22	+0.4
4,747,300	+		PFLU_RS21125	0.22	-0.2
4,747,300	+		PFLU_RS21125	0.22	-0.9
4,747,300	+		PFLU_RS21125	0.22	-0.4
4,747,300	+		PFLU_RS21125	0.22	-0.4
4,747,300	+		PFLU_RS21125	0.22	-0.3
4,747,301	-		PFLU_RS21125	0.22	+0.5
4,747,301	-		PFLU_RS21125	0.22	-1.9
4,747,301	-		PFLU_RS21125	0.22	-0.8
4,747,301	-		PFLU_RS21125	0.22	+0.1
4,747,301	-		PFLU_RS21125	0.22	+1.5
4,747,301	-		PFLU_RS21125	0.22	+1.8
4,747,301	-		PFLU_RS21125	0.22	+0.5
4,747,301	-		PFLU_RS21125	0.22	-1.0
4,747,301	-		PFLU_RS21125	0.22	+0.7
4,747,301	-		PFLU_RS21125	0.22	-0.4
4,747,301	-		PFLU_RS21125	0.22	+1.6
4,747,301	-		PFLU_RS21125	0.22	+0.6
4,747,301	-		PFLU_RS21125	0.22	+1.4
4,747,301	-		PFLU_RS21125	0.22	+1.0
4,747,301	-		PFLU_RS21125	0.22	-0.1
4,747,301	-		PFLU_RS21125	0.22	-1.2
4,747,301	-		PFLU_RS21125	0.22	+0.7
4,747,435	+		PFLU_RS21125	0.34	-0.5
4,747,435	+		PFLU_RS21125	0.34	-0.4
4,747,435	+		PFLU_RS21125	0.34	-2.5
4,747,435	+		PFLU_RS21125	0.34	+1.6
4,747,435	+		PFLU_RS21125	0.34	+0.8
4,747,435	+		PFLU_RS21125	0.34	+0.2
4,747,435	+		PFLU_RS21125	0.34	+0.3
4,747,435	+		PFLU_RS21125	0.34	+0.0
4,747,435	+		PFLU_RS21125	0.34	+0.1
4,747,435	+		PFLU_RS21125	0.34	-0.3
4,747,435	+		PFLU_RS21125	0.34	+1.1
4,747,435	+		PFLU_RS21125	0.34	-0.2
4,747,435	+		PFLU_RS21125	0.34	+0.5
4,747,435	+		PFLU_RS21125	0.34	-0.1
4,747,435	+		PFLU_RS21125	0.34	+0.1
4,747,435	+		PFLU_RS21125	0.34	+0.9
4,747,436	-		PFLU_RS21125	0.34	-0.7
4,747,436	-		PFLU_RS21125	0.34	-0.8
4,747,436	-		PFLU_RS21125	0.34	+1.7
4,747,436	-		PFLU_RS21125	0.34	-0.3
4,747,436	-		PFLU_RS21125	0.34	+0.1
4,747,436	-		PFLU_RS21125	0.34	-0.4
4,747,436	-		PFLU_RS21125	0.34	+1.5
4,747,436	-		PFLU_RS21125	0.34	+2.2
4,747,436	-		PFLU_RS21125	0.34	+0.7
4,747,436	-		PFLU_RS21125	0.34	-0.6
4,747,436	-		PFLU_RS21125	0.34	+0.3
4,747,436	-		PFLU_RS21125	0.34	-1.0
4,747,436	-		PFLU_RS21125	0.34	+0.2
4,747,458	+		PFLU_RS21125	0.36	+0.0
4,747,459	-		PFLU_RS21125	0.36	+1.2
4,747,459	-		PFLU_RS21125	0.36	-0.4
4,747,593	+		PFLU_RS21125	0.47	-0.5
4,747,593	+		PFLU_RS21125	0.47	+0.0
4,747,593	+		PFLU_RS21125	0.47	+1.3
4,747,593	+		PFLU_RS21125	0.47	+1.7
4,747,593	+		PFLU_RS21125	0.47	+0.2
4,747,593	+		PFLU_RS21125	0.47	-0.2
4,747,593	+		PFLU_RS21125	0.47	+0.9
4,747,593	+		PFLU_RS21125	0.47	+0.4
4,747,593	+		PFLU_RS21125	0.47	+0.7
4,747,594	-		PFLU_RS21125	0.48	-0.6
4,747,594	-		PFLU_RS21125	0.48	+0.9
4,747,594	-		PFLU_RS21125	0.48	+0.4
4,747,594	-		PFLU_RS21125	0.48	-1.2
4,747,594	-		PFLU_RS21125	0.48	+0.7
4,747,594	-		PFLU_RS21125	0.48	+0.8
4,747,594	-		PFLU_RS21125	0.48	+0.6
4,747,594	-		PFLU_RS21125	0.48	+0.6
4,747,594	-		PFLU_RS21125	0.48	-0.3
4,747,668	+		PFLU_RS21125	0.54	-1.1
4,747,668	+		PFLU_RS21125	0.54	-0.1
4,747,669	-		PFLU_RS21125	0.54	-1.2
4,747,678	+		PFLU_RS21125	0.55	-1.8
4,747,678	+		PFLU_RS21125	0.55	-0.3
4,747,678	+		PFLU_RS21125	0.55	+0.5
4,747,678	+		PFLU_RS21125	0.55	-0.1
4,747,679	-		PFLU_RS21125	0.55	-0.2
4,747,679	-		PFLU_RS21125	0.55	-0.6
4,747,679	-		PFLU_RS21125	0.55	+0.0
4,747,679	-		PFLU_RS21125	0.55	-0.5
4,747,708	+		PFLU_RS21125	0.57	-0.5
4,747,708	+		PFLU_RS21125	0.57	+0.3
4,747,708	+		PFLU_RS21125	0.57	+1.5
4,747,708	+		PFLU_RS21125	0.57	+0.1
4,747,708	+		PFLU_RS21125	0.57	+0.2
4,747,708	+		PFLU_RS21125	0.57	+0.0
4,747,708	+		PFLU_RS21125	0.57	-0.7
4,747,708	+		PFLU_RS21125	0.57	+1.2
4,747,708	+		PFLU_RS21125	0.57	-0.6
4,747,708	+		PFLU_RS21125	0.57	-1.6
4,747,708	+		PFLU_RS21125	0.57	-1.5
4,747,708	+		PFLU_RS21125	0.57	-0.4
4,747,709	-		PFLU_RS21125	0.58	-0.5
4,747,709	-		PFLU_RS21125	0.58	+1.1
4,747,709	-		PFLU_RS21125	0.58	+0.5
4,747,709	-		PFLU_RS21125	0.58	+2.3
4,747,709	-		PFLU_RS21125	0.58	-0.9
4,747,709	-		PFLU_RS21125	0.58	+0.6
4,747,709	-		PFLU_RS21125	0.58	-0.9
4,747,709	-		PFLU_RS21125	0.58	-0.5
4,748,050	+		PFLU_RS21125	0.87	-0.5
4,748,050	+		PFLU_RS21125	0.87	-1.5
4,748,051	-		PFLU_RS21125	0.87	-0.7
4,748,141	+				-2.4
4,748,141	+				-0.9
4,748,141	+				+0.2
4,748,142	-				+0.7
4,748,142	-				-0.8
4,748,142	-				+0.1
4,748,177	+				+0.4
4,748,191	+				-0.5
4,748,211	+				+0.8
4,748,254	-				-0.0
4,748,277	+				+0.9
4,748,278	-				+1.0
4,748,280	+				-1.1
4,748,367	+				+1.1
4,748,367	+				-0.2
4,748,369	+				+0.5
4,748,370	-				+0.6
4,748,370	-				-0.2
4,748,390	-				-0.8
4,748,398	-				+0.6
4,748,400	+				+0.7
4,748,400	+				-0.0
4,748,401	-				+0.3
4,748,401	-				-1.0
4,748,401	-				-0.5
4,748,428	-				+0.0
4,748,464	-				+0.8
4,748,473	+				-0.3
4,748,473	+				+0.2
4,748,473	+				-1.4
4,748,473	+				+0.7
4,748,473	+				+0.6
4,748,480	+				+0.0
4,748,480	+				+0.8
4,748,480	+				-1.5
4,748,481	-				+0.4
4,748,508	-				-0.3
4,748,657	+		PFLU_RS21130	0.17	-0.6
4,748,715	+		PFLU_RS21130	0.24	+0.1
4,748,716	-		PFLU_RS21130	0.24	-0.5
4,748,778	+		PFLU_RS21130	0.30	+0.0
4,748,778	+		PFLU_RS21130	0.30	+0.6
4,748,778	+		PFLU_RS21130	0.30	-0.8
4,748,778	+		PFLU_RS21130	0.30	+1.2
4,748,779	-		PFLU_RS21130	0.31	+1.7
4,748,779	-		PFLU_RS21130	0.31	-0.7
4,748,779	-		PFLU_RS21130	0.31	+0.8
4,748,779	-		PFLU_RS21130	0.31	-0.9
4,748,779	-		PFLU_RS21130	0.31	-0.6
4,748,889	+		PFLU_RS21130	0.42	-0.2
4,748,890	-		PFLU_RS21130	0.43	+0.2
4,749,106	+		PFLU_RS21130	0.66	+0.4
4,749,106	+		PFLU_RS21130	0.66	+0.3
4,749,106	+		PFLU_RS21130	0.66	-0.4
4,749,106	+		PFLU_RS21130	0.66	+0.9
4,749,107	-		PFLU_RS21130	0.66	+0.5
4,749,107	-		PFLU_RS21130	0.66	-0.6
4,749,107	-		PFLU_RS21130	0.66	-0.4
4,749,107	-		PFLU_RS21130	0.66	+0.0
4,749,107	-		PFLU_RS21130	0.66	-0.9
4,749,107	-		PFLU_RS21130	0.66	+0.3
4,749,107	-		PFLU_RS21130	0.66	-0.6