Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19835 and PFLU_RS19840 are separated by 77 nucleotides PFLU_RS19840 and PFLU_RS19845 are separated by 4 nucleotides PFLU_RS19845 and PFLU_RS19850 are separated by 165 nucleotides PFLU_RS19850 and PFLU_RS19855 are separated by 10 nucleotides
PFLU_RS19835: PFLU_RS19835 - hypothetical protein, at 4,489,168 to 4,490,082
_RS19835
PFLU_RS19840: PFLU_RS19840 - hypothetical protein, at 4,490,160 to 4,490,585
_RS19840
PFLU_RS19845: PFLU_RS19845 - LLM class flavin-dependent oxidoreductase, at 4,490,590 to 4,491,924
_RS19845
PFLU_RS19850: PFLU_RS19850 - OmpA family protein, at 4,492,090 to 4,492,863
_RS19850
PFLU_RS19855: PFLU_RS19855 - DUF4398 domain-containing protein, at 4,492,874 to 4,493,266
_RS19855
Position (kb) 4490
4491
4492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4489.620 kb on + strand, within PFLU_RS19835 at 4489.621 kb on - strand, within PFLU_RS19835 at 4489.675 kb on + strand, within PFLU_RS19835 at 4489.679 kb on + strand, within PFLU_RS19835 at 4489.679 kb on + strand, within PFLU_RS19835 at 4489.679 kb on + strand, within PFLU_RS19835 at 4489.680 kb on - strand, within PFLU_RS19835 at 4489.680 kb on - strand, within PFLU_RS19835 at 4489.680 kb on - strand, within PFLU_RS19835 at 4489.680 kb on - strand, within PFLU_RS19835 at 4489.683 kb on + strand, within PFLU_RS19835 at 4489.697 kb on - strand, within PFLU_RS19835 at 4489.752 kb on + strand, within PFLU_RS19835 at 4489.752 kb on + strand, within PFLU_RS19835 at 4489.752 kb on + strand, within PFLU_RS19835 at 4489.752 kb on + strand, within PFLU_RS19835 at 4489.752 kb on + strand, within PFLU_RS19835 at 4489.753 kb on - strand, within PFLU_RS19835 at 4489.753 kb on - strand, within PFLU_RS19835 at 4489.753 kb on - strand, within PFLU_RS19835 at 4489.753 kb on - strand, within PFLU_RS19835 at 4489.753 kb on - strand, within PFLU_RS19835 at 4489.779 kb on + strand, within PFLU_RS19835 at 4489.779 kb on + strand, within PFLU_RS19835 at 4489.780 kb on - strand, within PFLU_RS19835 at 4489.780 kb on - strand, within PFLU_RS19835 at 4489.780 kb on - strand, within PFLU_RS19835 at 4489.814 kb on + strand, within PFLU_RS19835 at 4489.869 kb on + strand, within PFLU_RS19835 at 4489.869 kb on + strand, within PFLU_RS19835 at 4489.870 kb on - strand, within PFLU_RS19835 at 4489.870 kb on - strand, within PFLU_RS19835 at 4489.884 kb on + strand, within PFLU_RS19835 at 4489.885 kb on - strand, within PFLU_RS19835 at 4489.926 kb on + strand, within PFLU_RS19835 at 4489.942 kb on - strand, within PFLU_RS19835 at 4489.950 kb on + strand, within PFLU_RS19835 at 4489.956 kb on + strand, within PFLU_RS19835 at 4489.956 kb on + strand, within PFLU_RS19835 at 4489.956 kb on + strand, within PFLU_RS19835 at 4489.956 kb on + strand, within PFLU_RS19835 at 4489.982 kb on + strand, within PFLU_RS19835 at 4489.992 kb on - strand at 4489.992 kb on - strand at 4490.029 kb on - strand at 4490.062 kb on + strand at 4490.063 kb on - strand at 4490.063 kb on - strand at 4490.109 kb on + strand at 4490.110 kb on - strand at 4490.157 kb on + strand at 4490.157 kb on + strand at 4490.158 kb on - strand at 4490.158 kb on - strand at 4490.158 kb on - strand at 4490.167 kb on + strand at 4490.195 kb on + strand at 4490.196 kb on - strand at 4490.196 kb on - strand at 4490.196 kb on - strand at 4490.196 kb on - strand at 4490.203 kb on + strand, within PFLU_RS19840 at 4490.235 kb on + strand, within PFLU_RS19840 at 4490.235 kb on + strand, within PFLU_RS19840 at 4490.236 kb on - strand, within PFLU_RS19840 at 4490.236 kb on - strand, within PFLU_RS19840 at 4490.236 kb on - strand, within PFLU_RS19840 at 4490.236 kb on - strand, within PFLU_RS19840 at 4490.322 kb on + strand, within PFLU_RS19840 at 4490.322 kb on + strand, within PFLU_RS19840 at 4490.322 kb on + strand, within PFLU_RS19840 at 4490.322 kb on + strand, within PFLU_RS19840 at 4490.346 kb on + strand, within PFLU_RS19840 at 4490.347 kb on - strand, within PFLU_RS19840 at 4490.371 kb on + strand, within PFLU_RS19840 at 4490.373 kb on + strand, within PFLU_RS19840 at 4490.373 kb on + strand, within PFLU_RS19840 at 4490.373 kb on + strand, within PFLU_RS19840 at 4490.374 kb on - strand, within PFLU_RS19840 at 4490.374 kb on - strand, within PFLU_RS19840 at 4490.374 kb on - strand, within PFLU_RS19840 at 4490.374 kb on - strand, within PFLU_RS19840 at 4490.427 kb on + strand, within PFLU_RS19840 at 4490.427 kb on + strand, within PFLU_RS19840 at 4490.428 kb on - strand, within PFLU_RS19840 at 4490.428 kb on - strand, within PFLU_RS19840 at 4490.673 kb on - strand at 4490.686 kb on + strand at 4490.687 kb on - strand at 4490.875 kb on + strand, within PFLU_RS19845 at 4490.875 kb on + strand, within PFLU_RS19845 at 4490.875 kb on + strand, within PFLU_RS19845 at 4490.875 kb on + strand, within PFLU_RS19845 at 4490.876 kb on - strand, within PFLU_RS19845 at 4490.876 kb on - strand, within PFLU_RS19845 at 4490.876 kb on - strand, within PFLU_RS19845 at 4490.876 kb on - strand, within PFLU_RS19845 at 4490.876 kb on - strand, within PFLU_RS19845 at 4491.000 kb on - strand, within PFLU_RS19845 at 4491.179 kb on + strand, within PFLU_RS19845 at 4491.180 kb on - strand, within PFLU_RS19845 at 4491.180 kb on - strand, within PFLU_RS19845 at 4491.182 kb on + strand, within PFLU_RS19845 at 4491.182 kb on + strand, within PFLU_RS19845 at 4491.183 kb on - strand, within PFLU_RS19845 at 4491.183 kb on - strand, within PFLU_RS19845 at 4491.183 kb on - strand, within PFLU_RS19845 at 4491.233 kb on + strand, within PFLU_RS19845 at 4491.233 kb on + strand, within PFLU_RS19845 at 4491.233 kb on + strand, within PFLU_RS19845 at 4491.234 kb on - strand, within PFLU_RS19845 at 4491.234 kb on - strand, within PFLU_RS19845 at 4491.234 kb on - strand, within PFLU_RS19845 at 4491.425 kb on + strand, within PFLU_RS19845 at 4491.426 kb on - strand, within PFLU_RS19845 at 4491.495 kb on + strand, within PFLU_RS19845 at 4491.496 kb on - strand, within PFLU_RS19845 at 4491.576 kb on + strand, within PFLU_RS19845 at 4491.576 kb on + strand, within PFLU_RS19845 at 4491.623 kb on + strand, within PFLU_RS19845 at 4491.623 kb on + strand, within PFLU_RS19845 at 4491.740 kb on + strand, within PFLU_RS19845 at 4491.807 kb on - strand at 4491.930 kb on + strand at 4491.930 kb on + strand at 4491.930 kb on + strand at 4491.976 kb on + strand at 4491.976 kb on + strand at 4492.010 kb on + strand at 4492.011 kb on - strand at 4492.011 kb on - strand at 4492.011 kb on - strand at 4492.016 kb on + strand at 4492.017 kb on - strand at 4492.017 kb on - strand at 4492.022 kb on - strand at 4492.177 kb on - strand, within PFLU_RS19850 at 4492.330 kb on + strand, within PFLU_RS19850 at 4492.337 kb on - strand, within PFLU_RS19850 at 4492.337 kb on - strand, within PFLU_RS19850 at 4492.489 kb on + strand, within PFLU_RS19850 at 4492.525 kb on + strand, within PFLU_RS19850 at 4492.525 kb on + strand, within PFLU_RS19850 at 4492.622 kb on + strand, within PFLU_RS19850 at 4492.849 kb on + strand at 4492.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 4,489,620 + PFLU_RS19835 0.49 -0.2 4,489,621 - PFLU_RS19835 0.50 +0.4 4,489,675 + PFLU_RS19835 0.55 -0.8 4,489,679 + PFLU_RS19835 0.56 -1.8 4,489,679 + PFLU_RS19835 0.56 -0.7 4,489,679 + PFLU_RS19835 0.56 -0.3 4,489,680 - PFLU_RS19835 0.56 -1.9 4,489,680 - PFLU_RS19835 0.56 +0.4 4,489,680 - PFLU_RS19835 0.56 +1.4 4,489,680 - PFLU_RS19835 0.56 +1.2 4,489,683 + PFLU_RS19835 0.56 +1.0 4,489,697 - PFLU_RS19835 0.58 +0.8 4,489,752 + PFLU_RS19835 0.64 +0.4 4,489,752 + PFLU_RS19835 0.64 -1.2 4,489,752 + PFLU_RS19835 0.64 +1.0 4,489,752 + PFLU_RS19835 0.64 -0.1 4,489,752 + PFLU_RS19835 0.64 -0.5 4,489,753 - PFLU_RS19835 0.64 -0.3 4,489,753 - PFLU_RS19835 0.64 -0.3 4,489,753 - PFLU_RS19835 0.64 +0.1 4,489,753 - PFLU_RS19835 0.64 -0.7 4,489,753 - PFLU_RS19835 0.64 -0.5 4,489,779 + PFLU_RS19835 0.67 +0.0 4,489,779 + PFLU_RS19835 0.67 -0.3 4,489,780 - PFLU_RS19835 0.67 -1.5 4,489,780 - PFLU_RS19835 0.67 -0.7 4,489,780 - PFLU_RS19835 0.67 -0.5 4,489,814 + PFLU_RS19835 0.71 +1.1 4,489,869 + PFLU_RS19835 0.77 -1.4 4,489,869 + PFLU_RS19835 0.77 -0.6 4,489,870 - PFLU_RS19835 0.77 -0.8 4,489,870 - PFLU_RS19835 0.77 +0.2 4,489,884 + PFLU_RS19835 0.78 +1.3 4,489,885 - PFLU_RS19835 0.78 +1.7 4,489,926 + PFLU_RS19835 0.83 -0.1 4,489,942 - PFLU_RS19835 0.85 +0.2 4,489,950 + PFLU_RS19835 0.85 +0.2 4,489,956 + PFLU_RS19835 0.86 -1.1 4,489,956 + PFLU_RS19835 0.86 +0.7 4,489,956 + PFLU_RS19835 0.86 -0.2 4,489,956 + PFLU_RS19835 0.86 +0.5 4,489,982 + PFLU_RS19835 0.89 -1.4 4,489,992 - -1.5 4,489,992 - +1.1 4,490,029 - -1.3 4,490,062 + -0.8 4,490,063 - -0.6 4,490,063 - -1.6 4,490,109 + +0.7 4,490,110 - -0.6 4,490,157 + -0.5 4,490,157 + -0.3 4,490,158 - +1.0 4,490,158 - +0.2 4,490,158 - -0.9 4,490,167 + -0.2 4,490,195 + -0.2 4,490,196 - -1.3 4,490,196 - -0.7 4,490,196 - +1.5 4,490,196 - -0.2 4,490,203 + PFLU_RS19840 0.10 +0.9 4,490,235 + PFLU_RS19840 0.18 -0.5 4,490,235 + PFLU_RS19840 0.18 +0.1 4,490,236 - PFLU_RS19840 0.18 -0.6 4,490,236 - PFLU_RS19840 0.18 +1.7 4,490,236 - PFLU_RS19840 0.18 -0.2 4,490,236 - PFLU_RS19840 0.18 +0.3 4,490,322 + PFLU_RS19840 0.38 -1.0 4,490,322 + PFLU_RS19840 0.38 -0.2 4,490,322 + PFLU_RS19840 0.38 -0.2 4,490,322 + PFLU_RS19840 0.38 +0.1 4,490,346 + PFLU_RS19840 0.44 -0.4 4,490,347 - PFLU_RS19840 0.44 -0.4 4,490,371 + PFLU_RS19840 0.50 +2.7 4,490,373 + PFLU_RS19840 0.50 -2.1 4,490,373 + PFLU_RS19840 0.50 -2.3 4,490,373 + PFLU_RS19840 0.50 -1.2 4,490,374 - PFLU_RS19840 0.50 +0.6 4,490,374 - PFLU_RS19840 0.50 +0.2 4,490,374 - PFLU_RS19840 0.50 -0.3 4,490,374 - PFLU_RS19840 0.50 +1.1 4,490,427 + PFLU_RS19840 0.63 +0.7 4,490,427 + PFLU_RS19840 0.63 +0.6 4,490,428 - PFLU_RS19840 0.63 +0.2 4,490,428 - PFLU_RS19840 0.63 +0.3 4,490,673 - -0.5 4,490,686 + +0.3 4,490,687 - +0.7 4,490,875 + PFLU_RS19845 0.21 -0.0 4,490,875 + PFLU_RS19845 0.21 +0.7 4,490,875 + PFLU_RS19845 0.21 -1.3 4,490,875 + PFLU_RS19845 0.21 -0.8 4,490,876 - PFLU_RS19845 0.21 +0.7 4,490,876 - PFLU_RS19845 0.21 -0.2 4,490,876 - PFLU_RS19845 0.21 +0.6 4,490,876 - PFLU_RS19845 0.21 +1.7 4,490,876 - PFLU_RS19845 0.21 +1.1 4,491,000 - PFLU_RS19845 0.31 -0.7 4,491,179 + PFLU_RS19845 0.44 -0.3 4,491,180 - PFLU_RS19845 0.44 +0.1 4,491,180 - PFLU_RS19845 0.44 +0.4 4,491,182 + PFLU_RS19845 0.44 +0.3 4,491,182 + PFLU_RS19845 0.44 -0.5 4,491,183 - PFLU_RS19845 0.44 +0.7 4,491,183 - PFLU_RS19845 0.44 +0.4 4,491,183 - PFLU_RS19845 0.44 +0.1 4,491,233 + PFLU_RS19845 0.48 -1.8 4,491,233 + PFLU_RS19845 0.48 +1.7 4,491,233 + PFLU_RS19845 0.48 +0.7 4,491,234 - PFLU_RS19845 0.48 +0.4 4,491,234 - PFLU_RS19845 0.48 +0.0 4,491,234 - PFLU_RS19845 0.48 -0.1 4,491,425 + PFLU_RS19845 0.63 -0.1 4,491,426 - PFLU_RS19845 0.63 -0.3 4,491,495 + PFLU_RS19845 0.68 +1.0 4,491,496 - PFLU_RS19845 0.68 -0.2 4,491,576 + PFLU_RS19845 0.74 -0.5 4,491,576 + PFLU_RS19845 0.74 +0.5 4,491,623 + PFLU_RS19845 0.77 +0.2 4,491,623 + PFLU_RS19845 0.77 +0.5 4,491,740 + PFLU_RS19845 0.86 +1.5 4,491,807 - -0.1 4,491,930 + +0.6 4,491,930 + +0.0 4,491,930 + +0.3 4,491,976 + -0.1 4,491,976 + -0.2 4,492,010 + -1.6 4,492,011 - -0.1 4,492,011 - -2.8 4,492,011 - +0.2 4,492,016 + +0.2 4,492,017 - -0.8 4,492,017 - -0.8 4,492,022 - -1.0 4,492,177 - PFLU_RS19850 0.11 +1.2 4,492,330 + PFLU_RS19850 0.31 +0.0 4,492,337 - PFLU_RS19850 0.32 -0.5 4,492,337 - PFLU_RS19850 0.32 +1.2 4,492,489 + PFLU_RS19850 0.52 -0.7 4,492,525 + PFLU_RS19850 0.56 -2.5 4,492,525 + PFLU_RS19850 0.56 +0.7 4,492,622 + PFLU_RS19850 0.69 -0.1 4,492,849 + -2.3 4,492,850 - -0.1
Or see this region's nucleotide sequence