Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16260

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,691,046	+		PFLU_RS16250	0.66	+0.2
3,691,046	+		PFLU_RS16250	0.66	-0.6
3,691,046	+		PFLU_RS16250	0.66	+0.3
3,691,046	+		PFLU_RS16250	0.66	+2.5
3,691,046	+		PFLU_RS16250	0.66	-0.2
3,691,047	-		PFLU_RS16250	0.67	-0.8
3,691,047	-		PFLU_RS16250	0.67	-0.6
3,691,087	+		PFLU_RS16250	0.83	+0.1
3,691,088	-		PFLU_RS16250	0.83	-0.6
3,691,088	-		PFLU_RS16250	0.83	-1.2
3,691,206	+				+0.4
3,691,206	+				+0.2
3,691,207	-				-0.3
3,691,210	+				+0.5
3,691,211	-				+2.2
3,691,216	+				-0.4
3,691,216	+				-0.8
3,691,217	-				+0.2
3,691,217	-				-0.8
3,691,217	-				-0.6
3,691,217	-				+1.2
3,691,233	-				+0.5
3,691,249	+				+0.5
3,691,250	-				+1.2
3,691,253	+				-1.3
3,691,253	+				+0.4
3,691,254	-				+1.5
3,691,355	-		PFLU_RS16255	0.11	+2.2
3,691,513	+		PFLU_RS16255	0.38	+1.2
3,691,513	+		PFLU_RS16255	0.38	-0.0
3,691,513	+		PFLU_RS16255	0.38	+1.0
3,691,514	-		PFLU_RS16255	0.38	-2.7
3,691,537	+		PFLU_RS16255	0.42	+1.2
3,691,537	+		PFLU_RS16255	0.42	-0.8
3,691,538	-		PFLU_RS16255	0.42	+0.1
3,691,625	+		PFLU_RS16255	0.57	+0.0
3,691,625	+		PFLU_RS16255	0.57	-1.1
3,691,625	+		PFLU_RS16255	0.57	-1.8
3,691,625	+		PFLU_RS16255	0.57	+0.1
3,691,625	+		PFLU_RS16255	0.57	-0.2
3,691,625	+		PFLU_RS16255	0.57	+0.4
3,691,625	+		PFLU_RS16255	0.57	-0.7
3,691,625	+		PFLU_RS16255	0.57	-0.7
3,691,625	+		PFLU_RS16255	0.57	-0.8
3,691,625	+		PFLU_RS16255	0.57	+0.0
3,691,625	+		PFLU_RS16255	0.57	+0.8
3,691,625	+		PFLU_RS16255	0.57	+0.2
3,691,625	+		PFLU_RS16255	0.57	-0.6
3,691,625	+		PFLU_RS16255	0.57	-1.4
3,691,625	+		PFLU_RS16255	0.57	+0.6
3,691,625	+		PFLU_RS16255	0.57	-1.2
3,691,625	+		PFLU_RS16255	0.57	-2.0
3,691,625	+		PFLU_RS16255	0.57	-0.1
3,691,625	+		PFLU_RS16255	0.57	-0.5
3,691,625	+		PFLU_RS16255	0.57	-2.6
3,691,625	+		PFLU_RS16255	0.57	-0.7
3,691,625	+		PFLU_RS16255	0.57	-0.3
3,691,625	+		PFLU_RS16255	0.57	-0.9
3,691,625	+		PFLU_RS16255	0.57	+0.4
3,691,626	-		PFLU_RS16255	0.57	-0.1
3,691,626	-		PFLU_RS16255	0.57	+0.7
3,691,626	-		PFLU_RS16255	0.57	-0.3
3,691,626	-		PFLU_RS16255	0.57	+0.5
3,691,626	-		PFLU_RS16255	0.57	-2.5
3,691,626	-		PFLU_RS16255	0.57	+1.2
3,691,626	-		PFLU_RS16255	0.57	-0.5
3,691,626	-		PFLU_RS16255	0.57	+0.3
3,691,626	-		PFLU_RS16255	0.57	-0.5
3,691,626	-		PFLU_RS16255	0.57	-0.0
3,691,626	-		PFLU_RS16255	0.57	-0.4
3,691,626	-		PFLU_RS16255	0.57	-0.8
3,691,626	-		PFLU_RS16255	0.57	-0.7
3,691,626	-		PFLU_RS16255	0.57	-1.4
3,691,626	-		PFLU_RS16255	0.57	+0.9
3,691,626	-		PFLU_RS16255	0.57	+1.3
3,691,626	-		PFLU_RS16255	0.57	+0.2
3,691,626	-		PFLU_RS16255	0.57	+1.2
3,691,626	-		PFLU_RS16255	0.57	+0.7
3,691,626	-		PFLU_RS16255	0.57	-0.3
3,691,663	-		PFLU_RS16255	0.63	+0.6
3,691,663	-		PFLU_RS16255	0.63	-0.4
3,691,736	+		PFLU_RS16255	0.76	+0.0
3,691,836	+				+0.5
3,691,836	+				-0.9
3,691,836	+				-0.2
3,691,837	-				+0.4
3,691,837	-				-0.0
3,691,837	-				-1.1
3,691,917	-				-0.7
3,692,073	-				-0.4
3,692,110	-				-0.6
3,692,174	+		PFLU_RS16260	0.12	-1.6
3,692,174	+		PFLU_RS16260	0.12	-0.9
3,692,174	+		PFLU_RS16260	0.12	+0.4
3,692,174	+		PFLU_RS16260	0.12	-1.0
3,692,174	+		PFLU_RS16260	0.12	-0.2
3,692,174	+		PFLU_RS16260	0.12	-0.9
3,692,174	+		PFLU_RS16260	0.12	-0.1
3,692,175	-		PFLU_RS16260	0.12	+0.2
3,692,175	-		PFLU_RS16260	0.12	-0.6
3,692,177	+		PFLU_RS16260	0.12	+0.2
3,692,178	-		PFLU_RS16260	0.12	+0.3
3,692,247	-		PFLU_RS16260	0.18	-0.4
3,692,267	+		PFLU_RS16260	0.20	+2.3
3,692,269	+		PFLU_RS16260	0.20	+0.1
3,692,269	+		PFLU_RS16260	0.20	-0.0
3,692,283	+		PFLU_RS16260	0.22	+1.3
3,692,283	+		PFLU_RS16260	0.22	-0.8
3,692,332	+		PFLU_RS16260	0.26	-0.2
3,692,333	-		PFLU_RS16260	0.26	+0.2
3,692,562	+		PFLU_RS16260	0.47	-1.4
3,692,562	+		PFLU_RS16260	0.47	+0.4
3,692,589	+		PFLU_RS16260	0.49	-0.2
3,692,589	+		PFLU_RS16260	0.49	+0.4
3,692,589	+		PFLU_RS16260	0.49	-0.6
3,692,589	+		PFLU_RS16260	0.49	+0.8
3,692,589	+		PFLU_RS16260	0.49	-0.8
3,692,589	+		PFLU_RS16260	0.49	-0.0
3,692,590	-		PFLU_RS16260	0.50	-1.1
3,692,590	-		PFLU_RS16260	0.50	+0.8
3,692,590	-		PFLU_RS16260	0.50	+1.2
3,692,590	-		PFLU_RS16260	0.50	+1.2
3,692,590	-		PFLU_RS16260	0.50	-0.1
3,692,825	+		PFLU_RS16260	0.71	+1.2
3,692,915	+		PFLU_RS16260	0.79	-0.3
3,692,915	+		PFLU_RS16260	0.79	-0.0
3,692,915	+		PFLU_RS16260	0.79	+1.5
3,692,915	+		PFLU_RS16260	0.79	+0.8
3,692,915	+		PFLU_RS16260	0.79	+0.6
3,692,916	-		PFLU_RS16260	0.79	-0.7
3,692,916	-		PFLU_RS16260	0.79	+1.0
3,692,916	-		PFLU_RS16260	0.79	-0.1
3,692,916	-		PFLU_RS16260	0.79	+0.0
3,692,916	-		PFLU_RS16260	0.79	+0.6
3,692,916	-		PFLU_RS16260	0.79	+1.0
3,692,934	-		PFLU_RS16260	0.81	+1.1
3,693,077	+				+0.5
3,693,098	+				-0.2
3,693,099	-				+1.0
3,693,099	-				+0.1
3,693,099	-				-0.6
3,693,173	+				+2.2
3,693,174	-				-0.9
3,693,174	-				+0.2
3,693,255	+				-0.4
3,693,256	-				+1.2
3,693,256	-				-0.8
3,693,348	-		PFLU_RS16265	0.19	+0.6
3,693,371	-		PFLU_RS16265	0.22	-0.4
3,693,511	+		PFLU_RS16265	0.40	-1.0
3,693,511	+		PFLU_RS16265	0.40	+1.5
3,693,511	+		PFLU_RS16265	0.40	-0.0
3,693,512	-		PFLU_RS16265	0.40	-0.1
3,693,512	-		PFLU_RS16265	0.40	-1.8
3,693,512	-		PFLU_RS16265	0.40	-2.6
3,693,610	+		PFLU_RS16265	0.52	-1.0
3,693,610	+		PFLU_RS16265	0.52	+0.6
3,693,610	+		PFLU_RS16265	0.52	+0.2
3,693,610	+		PFLU_RS16265	0.52	-0.0
3,693,610	+		PFLU_RS16265	0.52	+0.9
3,693,610	+		PFLU_RS16265	0.52	-2.5
3,693,610	+		PFLU_RS16265	0.52	+0.9
3,693,610	+		PFLU_RS16265	0.52	-0.1
3,693,610	+		PFLU_RS16265	0.52	-0.7
3,693,611	-		PFLU_RS16265	0.52	+0.0
3,693,611	-		PFLU_RS16265	0.52	-1.1
3,693,611	-		PFLU_RS16265	0.52	+1.9
3,693,611	-		PFLU_RS16265	0.52	+0.9
3,693,611	-		PFLU_RS16265	0.52	-0.4
3,693,611	-		PFLU_RS16265	0.52	-0.2
3,693,611	-		PFLU_RS16265	0.52	-0.4
3,693,611	-		PFLU_RS16265	0.52	-0.2
3,693,611	-		PFLU_RS16265	0.52	+0.6
3,693,655	-		PFLU_RS16265	0.58	-0.9
3,693,677	-		PFLU_RS16265	0.61	-0.7
3,693,685	+		PFLU_RS16265	0.62	+0.5
3,693,686	-		PFLU_RS16265	0.62	+0.6
3,693,686	-		PFLU_RS16265	0.62	-1.6
3,693,726	+		PFLU_RS16265	0.67	-0.1
3,693,726	+		PFLU_RS16265	0.67	+1.4
3,693,726	+		PFLU_RS16265	0.67	+0.4
3,693,726	+		PFLU_RS16265	0.67	-2.0
3,693,794	+		PFLU_RS16265	0.76	-0.4
3,693,984	+				+0.8
3,693,984	+				+1.1
3,693,984	+				+0.2
3,693,985	-				+0.0
3,693,985	-				-0.1
3,693,985	-				+1.6
3,693,985	-				+0.1
3,693,985	-				+1.2
3,693,988	+				-1.2
3,693,989	-				-0.6
3,693,989	-				+0.6
3,693,989	-				-1.0
3,693,997	+				-2.6
3,694,018	-				+0.1
3,694,018	-				-2.0
3,694,032	-				+0.2
3,694,047	-				-2.5