Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16125

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,663,242	+				-1.1
3,663,242	+				-0.1
3,663,243	-				-0.9
3,663,433	-		PFLU_RS16120	0.25	+0.3
3,663,523	+		PFLU_RS16120	0.39	-1.1
3,663,523	+		PFLU_RS16120	0.39	+0.4
3,663,523	+		PFLU_RS16120	0.39	-1.4
3,663,523	+		PFLU_RS16120	0.39	+0.6
3,663,523	+		PFLU_RS16120	0.39	+0.7
3,663,524	-		PFLU_RS16120	0.40	-0.9
3,663,524	-		PFLU_RS16120	0.40	+0.9
3,663,524	-		PFLU_RS16120	0.40	+0.1
3,663,524	-		PFLU_RS16120	0.40	+1.0
3,663,574	-		PFLU_RS16120	0.48	-1.3
3,663,780	+		PFLU_RS16120	0.81	-1.6
3,663,842	+				-0.0
3,663,842	+				+1.1
3,663,843	-				-1.4
3,663,858	-				+1.8
3,663,858	-				+0.1
3,663,899	+				+1.0
3,663,899	+				-0.4
3,663,899	+				-0.2
3,663,899	+				+0.4
3,663,900	-				-0.2
3,663,907	+				-1.2
3,663,907	+				-0.9
3,663,907	+				-0.4
3,663,907	+				+1.0
3,663,907	+				+0.6
3,663,907	+				+0.4
3,663,907	+				-0.6
3,663,907	+				+1.5
3,663,907	+				-1.0
3,663,907	+				+0.1
3,663,907	+				-0.2
3,663,907	+				+0.3
3,663,907	+				+0.2
3,663,907	+				+0.4
3,663,907	+				-2.3
3,663,907	+				+1.3
3,663,907	+				-1.6
3,663,907	+				-0.3
3,663,908	-				-0.2
3,663,908	-				+0.8
3,663,908	-				+0.3
3,663,908	-				-1.9
3,663,908	-				-0.0
3,663,908	-				+0.6
3,663,908	-				-1.4
3,663,908	-				-0.4
3,663,908	-				+0.2
3,663,908	-				-0.1
3,663,908	-				-0.2
3,663,908	-				+0.6
3,663,908	-				+0.1
3,663,908	-				-1.3
3,663,908	-				-0.8
3,663,908	-				+0.1
3,663,908	-				-1.4
3,663,908	-				+0.3
3,663,908	-				-0.6
3,663,908	-				+1.2
3,663,909	+				-1.2
3,663,909	+				+1.1
3,663,909	+				-0.6
3,663,909	+				+0.3
3,663,910	-				-0.5
3,663,910	-				-0.2
3,663,910	-				-0.9
3,663,910	-				-0.8
3,663,910	-				-0.0
3,663,910	-				+0.1
3,663,911	+				-0.2
3,663,911	+				+0.0
3,663,911	+				-0.5
3,663,911	+				-0.6
3,663,912	-				-0.8
3,663,912	-				-0.3
3,663,912	-				-1.2
3,663,912	-				+0.5
3,663,912	-				-0.8
3,663,912	-				-1.2
3,663,912	-				-0.7
3,663,932	+				-0.4
3,663,932	+				-0.4
3,663,932	+				-0.6
3,663,932	+				+2.7
3,663,933	-				+0.1
3,663,933	-				+1.7
3,663,933	-				+2.1
3,663,933	-				-0.1
3,663,933	-				-0.8
3,663,933	-				+0.4
3,664,004	+				-1.3
3,664,005	-				+0.1
3,664,005	-				+0.1
3,664,005	-				-0.1
3,664,005	-				-1.2
3,664,005	-				-0.4
3,664,022	+				-1.8
3,664,022	+				-0.9
3,664,022	+				-0.0
3,664,023	-				-0.9
3,664,023	-				-0.7
3,664,023	-				-1.0
3,664,023	-				+1.8
3,664,023	-				+0.1
3,664,023	-				+1.0
3,664,024	+				-0.9
3,664,024	+				+1.1
3,664,024	+				-0.9
3,664,024	+				+0.1
3,664,024	+				+0.5
3,664,025	-				-0.6
3,664,025	-				-1.6
3,664,025	-				+0.9
3,664,025	-				+0.7
3,664,193	+				+0.6
3,664,193	+				+2.5
3,664,193	+				+0.8
3,664,193	+				+1.6
3,664,193	+				-0.6
3,664,193	+				+1.4
3,664,193	+				+0.9
3,664,193	+				+0.6
3,664,193	+				+0.5
3,664,193	+				-0.2
3,664,193	+				+0.1
3,664,193	+				-1.7
3,664,193	+				+0.8
3,664,193	+				-0.1
3,664,193	+				+0.5
3,664,193	+				-0.2
3,664,193	+				+0.0
3,664,193	+				+2.5
3,664,193	+				-0.4
3,664,193	+				-0.5
3,664,193	+				-0.9
3,664,193	+				-0.6
3,664,194	-				+2.1
3,664,194	-				-0.4
3,664,194	-				+0.5
3,664,194	-				+0.6
3,664,194	-				-0.0
3,664,194	-				+0.1
3,664,194	-				-0.2
3,664,194	-				-2.8
3,664,194	-				+0.4
3,664,194	-				+0.3
3,664,194	-				-0.1
3,664,194	-				+0.7
3,664,194	-				-0.3
3,664,194	-				+0.1
3,664,194	-				-0.5
3,664,194	-				-0.4
3,664,194	-				-0.3
3,664,194	-				+0.3
3,664,194	-				-0.4
3,664,307	+		PFLU_RS16125	0.20	-0.3
3,664,307	+		PFLU_RS16125	0.20	-0.2
3,664,307	+		PFLU_RS16125	0.20	-1.0
3,664,308	-		PFLU_RS16125	0.20	+1.3
3,664,308	-		PFLU_RS16125	0.20	-0.2
3,664,308	-		PFLU_RS16125	0.20	-0.9
3,664,488	+		PFLU_RS16125	0.36	+0.1
3,664,489	-		PFLU_RS16125	0.36	-0.7
3,664,489	-		PFLU_RS16125	0.36	-0.3
3,664,489	-		PFLU_RS16125	0.36	-0.4
3,664,532	+		PFLU_RS16125	0.40	-1.2
3,664,532	+		PFLU_RS16125	0.40	-0.3
3,664,532	+		PFLU_RS16125	0.40	+0.5
3,664,533	-		PFLU_RS16125	0.40	+0.4
3,664,533	-		PFLU_RS16125	0.40	-0.1
3,664,533	-		PFLU_RS16125	0.40	+0.4
3,664,533	-		PFLU_RS16125	0.40	+0.5
3,664,541	+		PFLU_RS16125	0.41	-0.6
3,664,541	+		PFLU_RS16125	0.41	+0.3
3,664,542	-		PFLU_RS16125	0.41	-0.1
3,664,542	-		PFLU_RS16125	0.41	+1.1
3,664,576	+		PFLU_RS16125	0.44	+0.3
3,664,576	+		PFLU_RS16125	0.44	-0.2
3,664,576	+		PFLU_RS16125	0.44	-1.1
3,664,576	+		PFLU_RS16125	0.44	-1.1
3,664,576	+		PFLU_RS16125	0.44	-1.9
3,664,577	-		PFLU_RS16125	0.44	+0.1
3,664,577	-		PFLU_RS16125	0.44	-1.4
3,664,577	-		PFLU_RS16125	0.44	-1.0
3,664,577	-		PFLU_RS16125	0.44	+1.3
3,664,577	-		PFLU_RS16125	0.44	+0.3
3,664,577	-		PFLU_RS16125	0.44	+0.2
3,664,580	+		PFLU_RS16125	0.45	-2.0
3,664,580	+		PFLU_RS16125	0.45	-0.7
3,664,580	+		PFLU_RS16125	0.45	-0.3
3,664,580	+		PFLU_RS16125	0.45	+0.7
3,664,580	+		PFLU_RS16125	0.45	-0.0
3,664,581	-		PFLU_RS16125	0.45	-0.9
3,664,581	-		PFLU_RS16125	0.45	-0.9
3,664,581	-		PFLU_RS16125	0.45	-0.9
3,664,581	-		PFLU_RS16125	0.45	+0.5
3,664,581	-		PFLU_RS16125	0.45	+0.0
3,664,581	-		PFLU_RS16125	0.45	-1.2
3,664,581	-		PFLU_RS16125	0.45	-0.1
3,664,581	-		PFLU_RS16125	0.45	+0.7
3,664,581	-		PFLU_RS16125	0.45	-0.9
3,664,581	-		PFLU_RS16125	0.45	-0.9
3,664,619	+		PFLU_RS16125	0.48	-0.1
3,664,619	+		PFLU_RS16125	0.48	+0.1
3,664,619	+		PFLU_RS16125	0.48	-0.4
3,664,619	+		PFLU_RS16125	0.48	+0.4
3,664,620	-		PFLU_RS16125	0.48	+0.4
3,664,620	-		PFLU_RS16125	0.48	+0.4
3,664,620	-		PFLU_RS16125	0.48	-0.2
3,664,678	-		PFLU_RS16125	0.54	+0.7
3,664,678	-		PFLU_RS16125	0.54	-0.1
3,664,800	-		PFLU_RS16125	0.65	-1.4
3,664,800	-		PFLU_RS16125	0.65	-0.4
3,665,024	+		PFLU_RS16125	0.85	-0.6
3,665,024	+		PFLU_RS16125	0.85	-1.2
3,665,025	-		PFLU_RS16125	0.85	+0.6
3,665,082	-				-0.4
3,665,096	+				-0.3
3,665,096	+				-1.2
3,665,096	+				+0.1
3,665,096	+				-0.3
3,665,097	-				-0.2
3,665,097	-				-0.9
3,665,097	-				+0.4
3,665,097	-				+0.3
3,665,104	+				-1.7
3,665,232	+				+1.1
3,665,232	+				+0.4
3,665,232	+				-0.6
3,665,233	-				+0.9
3,665,233	-				+0.7
3,665,233	-				+0.6
3,665,233	-				-0.2
3,665,233	-				-0.1
3,665,236	-				+0.1
3,665,241	+				+0.6
3,665,241	+				+0.6
3,665,242	-				+0.5
3,665,250	+				-0.8
3,665,250	+				-0.3
3,665,251	-				-0.4
3,665,325	+				-0.1
3,665,325	+				+0.5
3,665,325	+				-1.3
3,665,325	+				-0.8
3,665,326	-				+0.0
3,665,326	-				+0.0
3,665,326	-				-0.3
3,665,338	+				-0.4
3,665,339	-				-2.8
3,665,339	-				+0.5
3,665,339	-				+2.3
3,665,339	-				-1.2
3,665,339	-				-2.2
3,665,340	+				-0.0
3,665,341	-				-0.7
3,665,341	-				+0.2
3,665,421	+		PFLU_RS16130	0.14	+0.6
3,665,421	+		PFLU_RS16130	0.14	+0.6
3,665,422	-		PFLU_RS16130	0.14	+1.5
3,665,449	-		PFLU_RS16130	0.16	+0.1
3,665,535	+		PFLU_RS16130	0.23	+0.1
3,665,536	-		PFLU_RS16130	0.23	-0.6
3,665,536	-		PFLU_RS16130	0.23	-0.4
3,665,536	-		PFLU_RS16130	0.23	-0.0
3,665,536	-		PFLU_RS16130	0.23	-2.5
3,665,536	-		PFLU_RS16130	0.23	-0.9
3,665,540	-		PFLU_RS16130	0.23	+0.8
3,665,587	+		PFLU_RS16130	0.27	+0.4
3,665,698	-		PFLU_RS16130	0.35	+0.0
3,665,767	-		PFLU_RS16130	0.40	+1.2
3,665,830	-		PFLU_RS16130	0.45	+0.4
3,665,830	-		PFLU_RS16130	0.45	-1.4
3,665,934	+		PFLU_RS16130	0.53	-1.1
3,665,934	+		PFLU_RS16130	0.53	-1.7
3,665,935	-		PFLU_RS16130	0.53	-1.4
3,665,935	-		PFLU_RS16130	0.53	+0.7
3,666,100	+		PFLU_RS16130	0.65	+0.4
3,666,135	+		PFLU_RS16130	0.68	+0.8
3,666,135	+		PFLU_RS16130	0.68	+3.2
3,666,135	+		PFLU_RS16130	0.68	-0.8
3,666,135	+		PFLU_RS16130	0.68	+1.3
3,666,136	-		PFLU_RS16130	0.68	-0.2
3,666,136	-		PFLU_RS16130	0.68	-0.1
3,666,136	-		PFLU_RS16130	0.68	-1.1
3,666,136	-		PFLU_RS16130	0.68	+1.9
3,666,186	+		PFLU_RS16130	0.71	+0.6