Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10930

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
2,409,978	+		PFLU_RS10920	0.82	-1.0
2,409,979	-		PFLU_RS10920	0.82	-0.8
2,409,979	-		PFLU_RS10920	0.82	+0.0
2,410,008	+		PFLU_RS10920	0.85	+0.1
2,410,008	+		PFLU_RS10920	0.85	-0.9
2,410,008	+		PFLU_RS10920	0.85	+1.2
2,410,008	+		PFLU_RS10920	0.85	-0.2
2,410,008	+		PFLU_RS10920	0.85	+0.2
2,410,008	+		PFLU_RS10920	0.85	+0.2
2,410,008	+		PFLU_RS10920	0.85	+0.8
2,410,009	-		PFLU_RS10920	0.85	+2.6
2,410,009	-		PFLU_RS10920	0.85	-0.4
2,410,009	-		PFLU_RS10920	0.85	-1.1
2,410,009	-		PFLU_RS10920	0.85	+1.1
2,410,009	-		PFLU_RS10920	0.85	+1.8
2,410,032	+		PFLU_RS10920	0.88	+1.3
2,410,127	+				-0.3
2,410,127	+				+0.2
2,410,128	-				-0.2
2,410,171	+				-1.1
2,410,171	+				-0.6
2,410,218	+				+1.9
2,410,227	+				+0.7
2,410,256	-		PFLU_RS10925	0.13	+0.2
2,410,256	-		PFLU_RS10925	0.13	+0.2
2,410,365	-		PFLU_RS10925	0.26	+0.9
2,410,518	+		PFLU_RS10925	0.44	+0.3
2,410,518	+		PFLU_RS10925	0.44	+0.1
2,410,518	+		PFLU_RS10925	0.44	+0.6
2,410,519	-		PFLU_RS10925	0.44	-1.2
2,410,519	-		PFLU_RS10925	0.44	-0.4
2,410,519	-		PFLU_RS10925	0.44	-1.0
2,410,519	-		PFLU_RS10925	0.44	-1.9
2,410,833	-		PFLU_RS10925	0.82	+0.6
2,410,833	-		PFLU_RS10925	0.82	-0.3
2,410,974	+				+0.3
2,411,044	+				+0.0
2,411,045	-				+1.1
2,411,045	-				+0.3
2,411,045	-				+0.6
2,411,081	+				-0.9
2,411,081	+				-0.4
2,411,081	+				-0.5
2,411,081	+				+0.0
2,411,082	-				+0.2
2,411,082	-				-0.7
2,411,082	-				+0.1
2,411,082	-				+0.7
2,411,088	-				-0.7
2,411,088	-				-0.3
2,411,088	-				+0.4
2,411,244	+		PFLU_RS10930	0.16	-0.3
2,411,245	-		PFLU_RS10930	0.16	+0.3
2,411,245	-		PFLU_RS10930	0.16	-0.7
2,411,245	-		PFLU_RS10930	0.16	-0.0
2,411,245	-		PFLU_RS10930	0.16	+0.5
2,411,246	+		PFLU_RS10930	0.16	-1.0
2,411,246	+		PFLU_RS10930	0.16	+0.3
2,411,246	+		PFLU_RS10930	0.16	-1.1
2,411,246	+		PFLU_RS10930	0.16	+0.0
2,411,246	+		PFLU_RS10930	0.16	+0.4
2,411,246	+		PFLU_RS10930	0.16	+1.6
2,411,246	+		PFLU_RS10930	0.16	+1.6
2,411,246	+		PFLU_RS10930	0.16	+0.3
2,411,246	+		PFLU_RS10930	0.16	+0.7
2,411,246	+		PFLU_RS10930	0.16	+0.3
2,411,246	+		PFLU_RS10930	0.16	-0.6
2,411,246	+		PFLU_RS10930	0.16	+0.1
2,411,246	+		PFLU_RS10930	0.16	-1.4
2,411,246	+		PFLU_RS10930	0.16	+0.8
2,411,246	+		PFLU_RS10930	0.16	-0.3
2,411,246	+		PFLU_RS10930	0.16	+2.0
2,411,246	+		PFLU_RS10930	0.16	-0.6
2,411,246	+		PFLU_RS10930	0.16	+1.1
2,411,246	+		PFLU_RS10930	0.16	-0.1
2,411,246	+		PFLU_RS10930	0.16	-3.3
2,411,246	+		PFLU_RS10930	0.16	-1.2
2,411,246	+		PFLU_RS10930	0.16	-0.2
2,411,246	+		PFLU_RS10930	0.16	-0.2
2,411,246	+		PFLU_RS10930	0.16	+0.8
2,411,246	+		PFLU_RS10930	0.16	-0.1
2,411,247	-		PFLU_RS10930	0.17	+0.8
2,411,247	-		PFLU_RS10930	0.17	-0.9
2,411,247	-		PFLU_RS10930	0.17	-0.2
2,411,247	-		PFLU_RS10930	0.17	-1.8
2,411,247	-		PFLU_RS10930	0.17	+1.1
2,411,247	-		PFLU_RS10930	0.17	+0.4
2,411,247	-		PFLU_RS10930	0.17	-2.8
2,411,247	-		PFLU_RS10930	0.17	-0.4
2,411,247	-		PFLU_RS10930	0.17	-0.6
2,411,247	-		PFLU_RS10930	0.17	-0.7
2,411,247	-		PFLU_RS10930	0.17	+0.5
2,411,247	-		PFLU_RS10930	0.17	+0.6
2,411,247	-		PFLU_RS10930	0.17	+0.7
2,411,247	-		PFLU_RS10930	0.17	-0.6
2,411,247	-		PFLU_RS10930	0.17	-0.1
2,411,247	-		PFLU_RS10930	0.17	+1.1
2,411,247	-		PFLU_RS10930	0.17	+0.0
2,411,247	-		PFLU_RS10930	0.17	-0.2
2,411,247	-		PFLU_RS10930	0.17	-0.6
2,411,383	+		PFLU_RS10930	0.25	-0.2
2,411,383	+		PFLU_RS10930	0.25	+0.0
2,411,383	+		PFLU_RS10930	0.25	+0.2
2,411,383	+		PFLU_RS10930	0.25	+0.7
2,411,383	+		PFLU_RS10930	0.25	-2.1
2,411,422	+		PFLU_RS10930	0.27	+1.3
2,411,562	-		PFLU_RS10930	0.36	+0.2
2,411,720	-		PFLU_RS10930	0.45	+1.6
2,411,814	+		PFLU_RS10930	0.51	+0.1
2,411,969	+		PFLU_RS10930	0.60	-1.2
2,411,969	+		PFLU_RS10930	0.60	-1.0
2,411,970	-		PFLU_RS10930	0.60	-0.8
2,411,970	-		PFLU_RS10930	0.60	-1.1
2,412,137	+		PFLU_RS10930	0.71	-0.4
2,412,258	+		PFLU_RS10930	0.78	-0.2
2,412,259	-		PFLU_RS10930	0.78	-2.2
2,412,297	-		PFLU_RS10930	0.80	+0.3
2,412,344	+		PFLU_RS10930	0.83	+0.0
2,412,344	+		PFLU_RS10930	0.83	+1.8
2,412,520	+				+0.7
2,412,520	+				+0.6
2,412,521	-				-0.2
2,412,521	-				+0.5
2,412,522	+				-0.1
2,412,523	-				+0.7
2,412,523	-				+0.9
2,412,624	+				-0.4
2,412,642	+				+0.6
2,412,643	-				+1.3
2,412,643	-				-0.9
2,412,687	-				-0.5
2,412,727	+		PFLU_RS10935	0.13	+0.7
2,412,728	-		PFLU_RS10935	0.13	+1.7
2,412,728	-		PFLU_RS10935	0.13	+0.6
2,412,728	-		PFLU_RS10935	0.13	-0.4
2,412,784	-		PFLU_RS10935	0.19	+0.3
2,412,876	-		PFLU_RS10935	0.30	-0.7
2,412,876	-		PFLU_RS10935	0.30	+0.6
2,412,912	+		PFLU_RS10935	0.34	-0.6
2,412,913	-		PFLU_RS10935	0.34	+0.2
2,412,913	-		PFLU_RS10935	0.34	+0.7
2,412,913	-		PFLU_RS10935	0.34	-2.4
2,413,023	+		PFLU_RS10935	0.47	+0.6
2,413,023	+		PFLU_RS10935	0.47	-2.0
2,413,023	+		PFLU_RS10935	0.47	-1.0
2,413,023	+		PFLU_RS10935	0.47	-2.4
2,413,023	+		PFLU_RS10935	0.47	-1.4
2,413,023	+		PFLU_RS10935	0.47	-2.9
2,413,023	+		PFLU_RS10935	0.47	-0.6
2,413,023	+		PFLU_RS10935	0.47	+0.8
2,413,023	+		PFLU_RS10935	0.47	+0.5
2,413,023	+		PFLU_RS10935	0.47	-1.3
2,413,024	-		PFLU_RS10935	0.47	+1.3
2,413,024	-		PFLU_RS10935	0.47	+0.5
2,413,024	-		PFLU_RS10935	0.47	-0.1
2,413,024	-		PFLU_RS10935	0.47	+1.2
2,413,024	-		PFLU_RS10935	0.47	+0.5
2,413,041	+		PFLU_RS10935	0.49	+1.4
2,413,184	+		PFLU_RS10935	0.65	-0.2
2,413,185	-		PFLU_RS10935	0.65	-0.1
2,413,217	+		PFLU_RS10935	0.69	+0.8
2,413,217	+		PFLU_RS10935	0.69	+0.2
2,413,217	+		PFLU_RS10935	0.69	-0.2
2,413,217	+		PFLU_RS10935	0.69	+0.6
2,413,218	-		PFLU_RS10935	0.69	+1.1
2,413,218	-		PFLU_RS10935	0.69	+0.2
2,413,218	-		PFLU_RS10935	0.69	-0.0
2,413,218	-		PFLU_RS10935	0.69	-0.4
2,413,218	-		PFLU_RS10935	0.69	-0.4
2,413,218	-		PFLU_RS10935	0.69	+0.0
2,413,233	+		PFLU_RS10935	0.71	+0.2
2,413,292	+		PFLU_RS10935	0.77	-0.2
2,413,292	+		PFLU_RS10935	0.77	-1.6
2,413,293	-		PFLU_RS10935	0.78	+1.7
2,413,293	-		PFLU_RS10935	0.78	+0.5
2,413,293	-		PFLU_RS10935	0.78	+1.2
2,413,293	-		PFLU_RS10935	0.78	-2.0