Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07995

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,780,996	+				-0.7
1,780,996	+				-0.9
1,780,997	-				-0.5
1,780,997	-				+0.0
1,781,027	+				+0.4
1,781,058	+		PFLU_RS07990	0.11	-1.4
1,781,058	+		PFLU_RS07990	0.11	-0.5
1,781,058	+		PFLU_RS07990	0.11	-0.8
1,781,059	-		PFLU_RS07990	0.12	+1.1
1,781,059	-		PFLU_RS07990	0.12	-0.4
1,781,060	+		PFLU_RS07990	0.12	+1.8
1,781,060	+		PFLU_RS07990	0.12	+0.0
1,781,060	+		PFLU_RS07990	0.12	-0.4
1,781,060	+		PFLU_RS07990	0.12	-0.1
1,781,060	+		PFLU_RS07990	0.12	-0.9
1,781,060	+		PFLU_RS07990	0.12	+0.2
1,781,060	+		PFLU_RS07990	0.12	+2.8
1,781,060	+		PFLU_RS07990	0.12	-0.8
1,781,060	+		PFLU_RS07990	0.12	+0.0
1,781,060	+		PFLU_RS07990	0.12	+0.3
1,781,060	+		PFLU_RS07990	0.12	+0.0
1,781,060	+		PFLU_RS07990	0.12	-0.6
1,781,060	+		PFLU_RS07990	0.12	+0.3
1,781,060	+		PFLU_RS07990	0.12	-1.3
1,781,061	-		PFLU_RS07990	0.12	-0.5
1,781,061	-		PFLU_RS07990	0.12	-1.1
1,781,061	-		PFLU_RS07990	0.12	+1.1
1,781,061	-		PFLU_RS07990	0.12	-0.3
1,781,061	-		PFLU_RS07990	0.12	+2.1
1,781,061	-		PFLU_RS07990	0.12	-0.6
1,781,061	-		PFLU_RS07990	0.12	-0.4
1,781,061	-		PFLU_RS07990	0.12	-1.8
1,781,061	-		PFLU_RS07990	0.12	+0.4
1,781,061	-		PFLU_RS07990	0.12	-0.5
1,781,061	-		PFLU_RS07990	0.12	+0.6
1,781,061	-		PFLU_RS07990	0.12	-0.9
1,781,061	-		PFLU_RS07990	0.12	-0.0
1,781,061	-		PFLU_RS07990	0.12	-0.5
1,781,061	-		PFLU_RS07990	0.12	-0.2
1,781,061	-		PFLU_RS07990	0.12	+0.5
1,781,345	+		PFLU_RS07990	0.43	-1.0
1,781,375	+		PFLU_RS07990	0.46	-1.8
1,781,375	+		PFLU_RS07990	0.46	-0.3
1,781,375	+		PFLU_RS07990	0.46	+0.4
1,781,376	-		PFLU_RS07990	0.47	+0.4
1,781,376	-		PFLU_RS07990	0.47	+0.8
1,781,376	-		PFLU_RS07990	0.47	+0.0
1,781,376	-		PFLU_RS07990	0.47	+0.1
1,781,376	-		PFLU_RS07990	0.47	+0.0
1,781,376	-		PFLU_RS07990	0.47	-0.5
1,781,376	-		PFLU_RS07990	0.47	-0.8
1,781,472	+		PFLU_RS07990	0.57	+0.0
1,781,472	+		PFLU_RS07990	0.57	-0.6
1,781,472	+		PFLU_RS07990	0.57	-0.0
1,781,473	-		PFLU_RS07990	0.57	-1.4
1,781,473	-		PFLU_RS07990	0.57	+0.3
1,781,473	-		PFLU_RS07990	0.57	-0.1
1,781,473	-		PFLU_RS07990	0.57	+0.4
1,781,473	-		PFLU_RS07990	0.57	-0.0
1,781,473	-		PFLU_RS07990	0.57	+0.5
1,781,476	+		PFLU_RS07990	0.58	-0.5
1,781,476	+		PFLU_RS07990	0.58	-0.2
1,781,476	+		PFLU_RS07990	0.58	-0.5
1,781,476	+		PFLU_RS07990	0.58	+0.3
1,781,476	+		PFLU_RS07990	0.58	+1.3
1,781,476	+		PFLU_RS07990	0.58	+1.2
1,781,476	+		PFLU_RS07990	0.58	+0.7
1,781,476	+		PFLU_RS07990	0.58	+1.0
1,781,476	+		PFLU_RS07990	0.58	-0.5
1,781,476	+		PFLU_RS07990	0.58	+0.4
1,781,477	-		PFLU_RS07990	0.58	-1.6
1,781,477	-		PFLU_RS07990	0.58	-0.1
1,781,477	-		PFLU_RS07990	0.58	-0.3
1,781,477	-		PFLU_RS07990	0.58	-0.1
1,781,477	-		PFLU_RS07990	0.58	-1.2
1,781,486	+		PFLU_RS07990	0.59	+0.7
1,781,486	+		PFLU_RS07990	0.59	-0.4
1,781,486	+		PFLU_RS07990	0.59	-0.7
1,781,486	+		PFLU_RS07990	0.59	-1.3
1,781,486	+		PFLU_RS07990	0.59	-0.8
1,781,486	+		PFLU_RS07990	0.59	+0.5
1,781,487	-		PFLU_RS07990	0.59	+0.8
1,781,487	-		PFLU_RS07990	0.59	+1.2
1,781,487	-		PFLU_RS07990	0.59	-1.3
1,781,487	-		PFLU_RS07990	0.59	+2.0
1,781,487	-		PFLU_RS07990	0.59	+0.2
1,781,487	-		PFLU_RS07990	0.59	+1.5
1,781,487	-		PFLU_RS07990	0.59	-0.4
1,781,487	-		PFLU_RS07990	0.59	-0.3
1,781,487	-		PFLU_RS07990	0.59	+0.2
1,781,487	-		PFLU_RS07990	0.59	-2.0
1,781,487	-		PFLU_RS07990	0.59	+2.0
1,781,487	-		PFLU_RS07990	0.59	+1.5
1,781,535	+		PFLU_RS07990	0.64	-1.6
1,781,535	+		PFLU_RS07990	0.64	-0.3
1,781,536	-		PFLU_RS07990	0.64	+0.0
1,781,536	-		PFLU_RS07990	0.64	+0.6
1,781,536	-		PFLU_RS07990	0.64	-0.2
1,781,536	-		PFLU_RS07990	0.64	+0.4
1,781,536	-		PFLU_RS07990	0.64	+0.6
1,781,663	+		PFLU_RS07990	0.78	+0.2
1,781,663	+		PFLU_RS07990	0.78	+0.2
1,781,664	-		PFLU_RS07990	0.78	-2.8
1,781,666	+		PFLU_RS07990	0.79	-0.7
1,781,666	+		PFLU_RS07990	0.79	+1.7
1,781,667	-		PFLU_RS07990	0.79	+1.4
1,781,667	-		PFLU_RS07990	0.79	+1.4
1,781,667	-		PFLU_RS07990	0.79	+0.8
1,781,831	+				+1.5
1,781,831	+				-0.7
1,781,832	-				-0.3
1,781,832	-				+1.2
1,781,832	-				-0.1
1,781,876	-				-0.1
1,781,924	+				+1.0
1,781,925	-				-1.4
1,781,940	-				+0.8
1,781,940	-				-1.1
1,781,940	-				+1.5
1,781,940	-				+0.6
1,781,940	-				+0.1
1,781,989	+				-0.3
1,781,989	+				-0.1
1,781,989	+				+0.8
1,781,989	+				+0.4
1,781,989	+				+1.2
1,781,989	+				-1.2
1,781,989	+				+0.4
1,781,989	+				+0.1
1,781,989	+				+0.4
1,781,990	-				-1.0
1,781,990	-				+0.1
1,781,990	-				+0.8
1,781,990	-				-0.0
1,781,990	-				-0.9
1,781,990	-				+0.1
1,781,990	-				+0.4
1,782,058	+				+1.3
1,782,059	-				-0.2
1,782,169	+		PFLU_RS07995	0.18	+0.3
1,782,169	+		PFLU_RS07995	0.18	-0.5
1,782,170	-		PFLU_RS07995	0.18	+0.3
1,782,170	-		PFLU_RS07995	0.18	-0.0
1,782,170	-		PFLU_RS07995	0.18	+0.8
1,782,450	+		PFLU_RS07995	0.42	+0.0
1,782,461	+		PFLU_RS07995	0.43	-0.2
1,782,462	-		PFLU_RS07995	0.43	+0.7
1,782,518	+		PFLU_RS07995	0.48	+0.2
1,782,518	+		PFLU_RS07995	0.48	-0.0
1,782,518	+		PFLU_RS07995	0.48	-1.4
1,782,518	+		PFLU_RS07995	0.48	-0.2
1,782,518	+		PFLU_RS07995	0.48	+0.8
1,782,519	-		PFLU_RS07995	0.48	-1.6
1,782,537	-		PFLU_RS07995	0.49	-0.7
1,782,762	+		PFLU_RS07995	0.68	-0.1
1,782,762	+		PFLU_RS07995	0.68	+0.8
1,782,762	+		PFLU_RS07995	0.68	+0.2
1,783,121	+				-0.0
1,783,122	-				+0.3
1,783,122	-				+0.2
1,783,177	+				-0.5
1,783,177	+				+1.5
1,783,177	+				-0.2
1,783,177	+				-0.6
1,783,178	-				-0.0
1,783,178	-				-0.3
1,783,178	-				-0.4
1,783,178	-				+0.1
1,783,178	-				+0.7
1,783,178	-				-0.4
1,783,178	-				-0.7
1,783,189	+				-0.4
1,783,189	+				-1.2
1,783,190	-				+0.9
1,783,308	+				+0.8
1,783,308	+				-0.0
1,783,308	+				-0.9
1,783,309	-				+0.5
1,783,309	-				-0.3
1,783,309	-				+0.5
1,783,693	+		PFLU_RS08000	0.48	+0.1
1,783,693	+		PFLU_RS08000	0.48	-0.9
1,783,693	+		PFLU_RS08000	0.48	+1.3
1,783,693	+		PFLU_RS08000	0.48	-0.5
1,783,693	+		PFLU_RS08000	0.48	-0.2
1,783,740	+		PFLU_RS08000	0.53	-1.2
1,783,769	+		PFLU_RS08000	0.56	+0.4
1,783,769	+		PFLU_RS08000	0.56	+1.5
1,783,769	+		PFLU_RS08000	0.56	-0.7
1,783,769	+		PFLU_RS08000	0.56	-1.7
1,783,769	+		PFLU_RS08000	0.56	+0.1
1,783,769	+		PFLU_RS08000	0.56	+0.5
1,783,769	+		PFLU_RS08000	0.56	-0.4
1,783,770	-		PFLU_RS08000	0.57	-1.1
1,783,770	-		PFLU_RS08000	0.57	-0.4
1,783,779	+		PFLU_RS08000	0.57	-0.2
1,783,779	+		PFLU_RS08000	0.57	+3.0
1,783,779	+		PFLU_RS08000	0.57	-0.7
1,783,779	+		PFLU_RS08000	0.57	+0.4
1,783,779	+		PFLU_RS08000	0.57	+0.8
1,783,780	-		PFLU_RS08000	0.58	-0.4
1,783,780	-		PFLU_RS08000	0.58	-1.8
1,783,780	-		PFLU_RS08000	0.58	-0.9
1,783,780	-		PFLU_RS08000	0.58	-0.2
1,783,788	+		PFLU_RS08000	0.58	-0.9
1,783,789	-		PFLU_RS08000	0.59	-0.4
1,784,000	+		PFLU_RS08000	0.82	-0.6
1,784,001	-		PFLU_RS08000	0.82	-0.1
1,784,001	-		PFLU_RS08000	0.82	+0.3
1,784,064	+		PFLU_RS08000	0.89	+0.3
1,784,064	+		PFLU_RS08000	0.89	-1.4
1,784,064	+		PFLU_RS08000	0.89	+0.8
1,784,064	+		PFLU_RS08000	0.89	-0.1
1,784,064	+		PFLU_RS08000	0.89	+0.5
1,784,064	+		PFLU_RS08000	0.89	+0.2
1,784,064	+		PFLU_RS08000	0.89	-0.1
1,784,064	+		PFLU_RS08000	0.89	-0.5
1,784,064	+		PFLU_RS08000	0.89	-0.7
1,784,064	+		PFLU_RS08000	0.89	+0.9
1,784,064	+		PFLU_RS08000	0.89	+0.3
1,784,064	+		PFLU_RS08000	0.89	+1.0
1,784,065	-		PFLU_RS08000	0.89	+1.2
1,784,065	-		PFLU_RS08000	0.89	-1.3
1,784,065	-		PFLU_RS08000	0.89	-1.0
1,784,065	-		PFLU_RS08000	0.89	-0.0
1,784,065	-		PFLU_RS08000	0.89	+0.1
1,784,065	-		PFLU_RS08000	0.89	+0.5
1,784,065	-		PFLU_RS08000	0.89	+0.1
1,784,065	-		PFLU_RS08000	0.89	-0.7
1,784,065	-		PFLU_RS08000	0.89	+0.3
1,784,065	-		PFLU_RS08000	0.89	-0.5
1,784,071	+		PFLU_RS08000	0.89	+0.9