Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07200

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,606,658	+		PFLU_RS07195	0.55	-0.1
1,606,658	+		PFLU_RS07195	0.55	-0.9
1,606,666	-		PFLU_RS07195	0.57	+1.5
1,606,895	+				+1.3
1,606,895	+				+1.0
1,606,896	-				-0.4
1,606,918	+				+0.7
1,606,932	+				+0.9
1,606,932	+				-1.8
1,606,972	+				-0.8
1,606,972	+				-3.1
1,606,972	+				+0.1
1,606,991	+				+0.4
1,606,991	+				-0.2
1,606,991	+				-0.2
1,606,991	+				-0.3
1,606,992	-				+1.1
1,606,992	-				+1.1
1,607,012	+				-0.2
1,607,081	-				-0.1
1,607,081	-				+0.8
1,607,110	+				+1.5
1,607,111	-				-0.1
1,607,111	-				+0.2
1,607,111	-				-0.2
1,607,111	-				-1.9
1,607,121	+				+0.4
1,607,122	-				-0.3
1,607,122	-				-1.0
1,607,122	-				-0.8
1,607,136	+				+0.1
1,607,136	+				-0.1
1,607,153	+				+0.1
1,607,154	-				-0.5
1,607,167	-				-0.6
1,607,172	-				-0.5
1,607,241	+				-0.3
1,607,260	-				+0.0
1,607,401	+				+0.3
1,607,424	+				-0.6
1,607,442	+				-1.8
1,607,442	+				+0.3
1,607,442	+				-1.2
1,607,442	+				-1.0
1,607,442	+				+1.0
1,607,443	-				+0.3
1,607,443	-				+1.2
1,607,443	-				+0.5
1,607,443	-				+0.5
1,607,443	-				-1.4
1,607,443	-				+0.2
1,607,444	+				+0.8
1,607,445	-				+0.7
1,607,445	-				+0.1
1,607,445	-				-0.2
1,607,482	-				-1.3
1,607,482	-				-0.9
1,607,494	+				-1.3
1,607,557	+				+0.1
1,607,557	+				-1.4
1,607,557	+				+0.3
1,607,558	-				+0.3
1,607,558	-				-0.8
1,607,558	-				-1.8
1,607,560	+				-0.2
1,607,560	+				+0.3
1,607,560	+				+1.1
1,607,560	+				+1.2
1,607,560	+				-1.1
1,607,560	+				-1.4
1,607,561	-				-1.6
1,607,561	-				-0.5
1,607,561	-				-2.0
1,607,561	-				-1.8
1,607,661	+		PFLU_RS07200	0.13	-0.3
1,607,661	+		PFLU_RS07200	0.13	+1.2
1,607,661	+		PFLU_RS07200	0.13	+0.2
1,607,661	+		PFLU_RS07200	0.13	-0.5
1,607,661	+		PFLU_RS07200	0.13	-0.4
1,607,661	+		PFLU_RS07200	0.13	-1.7
1,607,662	-		PFLU_RS07200	0.13	+0.4
1,607,662	-		PFLU_RS07200	0.13	+0.1
1,607,662	-		PFLU_RS07200	0.13	+1.5
1,607,662	-		PFLU_RS07200	0.13	+1.0
1,607,662	-		PFLU_RS07200	0.13	+0.5
1,607,662	-		PFLU_RS07200	0.13	+0.4
1,607,671	-		PFLU_RS07200	0.14	+0.8
1,607,671	-		PFLU_RS07200	0.14	-0.8
1,607,671	-		PFLU_RS07200	0.14	+0.7
1,607,671	-		PFLU_RS07200	0.14	+0.4
1,607,671	-		PFLU_RS07200	0.14	+0.3
1,607,705	+		PFLU_RS07200	0.19	-0.3
1,607,705	+		PFLU_RS07200	0.19	+1.0
1,607,705	+		PFLU_RS07200	0.19	+0.4
1,607,705	+		PFLU_RS07200	0.19	-1.0
1,607,705	+		PFLU_RS07200	0.19	-0.4
1,607,706	-		PFLU_RS07200	0.19	+0.2
1,607,706	-		PFLU_RS07200	0.19	+0.8
1,607,707	+		PFLU_RS07200	0.19	+0.8
1,607,707	+		PFLU_RS07200	0.19	+0.4
1,607,707	+		PFLU_RS07200	0.19	-0.5
1,607,707	+		PFLU_RS07200	0.19	-0.9
1,607,707	+		PFLU_RS07200	0.19	-0.6
1,607,708	-		PFLU_RS07200	0.19	-0.1
1,607,708	-		PFLU_RS07200	0.19	-0.4
1,607,708	-		PFLU_RS07200	0.19	-1.8
1,607,722	+		PFLU_RS07200	0.21	+0.9
1,607,722	+		PFLU_RS07200	0.21	-0.8
1,607,723	-		PFLU_RS07200	0.21	+0.9
1,607,723	-		PFLU_RS07200	0.21	+0.3
1,607,770	+		PFLU_RS07200	0.27	+0.4
1,607,805	+		PFLU_RS07200	0.32	+1.0
1,607,805	+		PFLU_RS07200	0.32	+0.2
1,607,805	+		PFLU_RS07200	0.32	-0.9
1,607,805	+		PFLU_RS07200	0.32	-0.2
1,607,806	-		PFLU_RS07200	0.32	+0.6
1,607,886	+		PFLU_RS07200	0.42	-0.0
1,607,886	+		PFLU_RS07200	0.42	-1.8
1,607,886	+		PFLU_RS07200	0.42	+0.0
1,607,887	-		PFLU_RS07200	0.42	+0.5
1,607,887	-		PFLU_RS07200	0.42	+0.8
1,607,887	-		PFLU_RS07200	0.42	-0.6
1,607,887	-		PFLU_RS07200	0.42	+0.8
1,607,887	-		PFLU_RS07200	0.42	+1.1
1,607,887	-		PFLU_RS07200	0.42	-0.5
1,607,887	-		PFLU_RS07200	0.42	+0.0
1,607,887	-		PFLU_RS07200	0.42	-1.1
1,607,905	+		PFLU_RS07200	0.45	-0.8
1,607,905	+		PFLU_RS07200	0.45	-0.4
1,607,905	+		PFLU_RS07200	0.45	-0.9
1,607,906	-		PFLU_RS07200	0.45	+1.8
1,607,944	+		PFLU_RS07200	0.50	+1.2
1,607,944	+		PFLU_RS07200	0.50	-0.1
1,607,944	+		PFLU_RS07200	0.50	+0.2
1,607,944	+		PFLU_RS07200	0.50	-0.1
1,607,944	+		PFLU_RS07200	0.50	-1.7
1,607,944	+		PFLU_RS07200	0.50	-0.2
1,607,944	+		PFLU_RS07200	0.50	-1.7
1,607,944	+		PFLU_RS07200	0.50	+0.7
1,607,944	+		PFLU_RS07200	0.50	-0.1
1,607,944	+		PFLU_RS07200	0.50	-2.3
1,607,945	-		PFLU_RS07200	0.50	+0.2
1,607,945	-		PFLU_RS07200	0.50	-1.2
1,607,945	-		PFLU_RS07200	0.50	-0.5
1,607,945	-		PFLU_RS07200	0.50	-0.3
1,607,945	-		PFLU_RS07200	0.50	-0.5
1,607,945	-		PFLU_RS07200	0.50	-1.4
1,607,945	-		PFLU_RS07200	0.50	+0.1
1,607,945	-		PFLU_RS07200	0.50	+0.8
1,607,945	-		PFLU_RS07200	0.50	+0.8
1,607,954	+		PFLU_RS07200	0.51	-0.5
1,607,955	-		PFLU_RS07200	0.51	+1.0
1,607,956	+		PFLU_RS07200	0.51	+0.1
1,607,956	+		PFLU_RS07200	0.51	-0.1
1,607,956	+		PFLU_RS07200	0.51	+0.6
1,607,956	+		PFLU_RS07200	0.51	-0.8
1,607,956	+		PFLU_RS07200	0.51	-0.2
1,607,956	+		PFLU_RS07200	0.51	-0.4
1,607,956	+		PFLU_RS07200	0.51	-0.5
1,607,956	+		PFLU_RS07200	0.51	+0.0
1,607,956	+		PFLU_RS07200	0.51	-0.4
1,607,956	+		PFLU_RS07200	0.51	+0.1
1,607,956	+		PFLU_RS07200	0.51	-0.1
1,607,957	-		PFLU_RS07200	0.52	+0.4
1,607,957	-		PFLU_RS07200	0.52	+0.7
1,607,957	-		PFLU_RS07200	0.52	+0.4
1,607,957	-		PFLU_RS07200	0.52	-2.4
1,607,957	-		PFLU_RS07200	0.52	-1.1
1,607,957	-		PFLU_RS07200	0.52	-0.4
1,607,957	-		PFLU_RS07200	0.52	+0.7
1,607,957	-		PFLU_RS07200	0.52	+0.7
1,607,957	-		PFLU_RS07200	0.52	+1.6
1,607,957	-		PFLU_RS07200	0.52	+0.2
1,607,957	-		PFLU_RS07200	0.52	+1.3
1,607,957	-		PFLU_RS07200	0.52	+0.1
1,607,988	+		PFLU_RS07200	0.56	+0.3
1,607,988	+		PFLU_RS07200	0.56	+1.4
1,608,121	+		PFLU_RS07200	0.73	+1.1
1,608,121	+		PFLU_RS07200	0.73	-0.5
1,608,122	-		PFLU_RS07200	0.73	-0.8
1,608,122	-		PFLU_RS07200	0.73	+0.5
1,608,122	-		PFLU_RS07200	0.73	-0.1
1,608,254	+				+0.8
1,608,254	+				+0.1
1,608,254	+				+0.2
1,608,255	-				-1.4
1,608,255	-				+2.1
1,608,255	-				+0.2
1,608,255	-				-2.0
1,608,255	-				+0.3
1,608,267	+				+0.6
1,608,267	+				+1.2
1,608,267	+				+0.1
1,608,267	+				-1.7
1,608,267	+				+0.4
1,608,267	+				+0.1
1,608,268	-				+0.0
1,608,268	-				-0.0
1,608,362	+				-1.0
1,608,362	+				+0.2
1,608,362	+				+0.6
1,608,362	+				+0.5
1,608,362	+				+0.3
1,608,362	+				-0.6
1,608,362	+				-0.3
1,608,362	+				+0.5
1,608,363	-				+1.2
1,608,363	-				-0.2
1,608,363	-				-0.2
1,608,363	-				-1.2
1,608,363	-				-0.8
1,608,363	-				-1.2
1,608,363	-				-0.6
1,608,363	-				+2.1
1,608,363	-				+1.3
1,608,432	+				+0.2
1,608,442	+				+0.5
1,608,442	+				+0.1
1,608,442	+				-0.4
1,608,442	+				+0.2
1,608,442	+				+0.9
1,608,442	+				+0.5
1,608,442	+				+0.0
1,608,443	-				-0.1
1,608,443	-				+0.0
1,608,443	-				-0.5
1,608,443	-				+0.2
1,608,446	-				-0.6
1,608,459	+				+0.4
1,608,459	+				+0.2
1,608,459	+				+0.5
1,608,459	+				+0.9
1,608,459	+				-1.4
1,608,459	+				+0.0
1,608,460	-				+0.6
1,608,460	-				+0.7
1,608,460	-				-0.0
1,608,460	-				-0.4
1,608,460	-				+0.5
1,608,478	+				+0.2
1,608,636	+		PFLU_RS07210	0.46	+0.7
1,608,636	+		PFLU_RS07210	0.46	-0.9
1,608,636	+		PFLU_RS07210	0.46	-1.6
1,608,636	+		PFLU_RS07210	0.46	+0.1
1,608,637	-		PFLU_RS07210	0.47	-0.2
1,608,637	-		PFLU_RS07210	0.47	-1.2
1,608,637	-		PFLU_RS07210	0.47	-0.9
1,608,637	-		PFLU_RS07210	0.47	+0.6
1,608,647	+		PFLU_RS07210	0.50	+0.3
1,608,647	+		PFLU_RS07210	0.50	-0.2
1,608,647	+		PFLU_RS07210	0.50	-0.3
1,608,647	+		PFLU_RS07210	0.50	-2.0
1,608,647	+		PFLU_RS07210	0.50	-1.1
1,608,647	+		PFLU_RS07210	0.50	+0.5
1,608,648	-		PFLU_RS07210	0.51	-1.5
1,608,648	-		PFLU_RS07210	0.51	+0.9
1,608,648	-		PFLU_RS07210	0.51	+0.7
1,608,648	-		PFLU_RS07210	0.51	+0.5
1,608,648	-		PFLU_RS07210	0.51	-0.4
1,608,648	-		PFLU_RS07210	0.51	-0.3
1,608,649	+		PFLU_RS07210	0.51	-1.2
1,608,649	+		PFLU_RS07210	0.51	-0.6
1,608,649	+		PFLU_RS07210	0.51	-0.9
1,608,650	-		PFLU_RS07210	0.51	+0.1
1,608,650	-		PFLU_RS07210	0.51	+0.6
1,608,650	-		PFLU_RS07210	0.51	+0.2
1,608,704	+		PFLU_RS07210	0.70	-0.7
1,608,704	+		PFLU_RS07210	0.70	-2.6
1,608,704	+		PFLU_RS07210	0.70	-0.2
1,608,704	+		PFLU_RS07210	0.70	-0.8
1,608,704	+		PFLU_RS07210	0.70	-1.2
1,608,705	-		PFLU_RS07210	0.70	-0.9
1,608,705	-		PFLU_RS07210	0.70	-0.1
1,608,705	-		PFLU_RS07210	0.70	-0.1
1,608,746	+		PFLU_RS07210	0.84	+0.4
1,608,747	-		PFLU_RS07210	0.85	+0.6
1,608,748	+		PFLU_RS07210	0.85	+0.0
1,608,748	+		PFLU_RS07210	0.85	-0.7
1,608,749	-		PFLU_RS07210	0.85	-0.0
1,608,760	+		PFLU_RS07210	0.89	-1.3
1,608,790	-				+1.4
1,608,836	+				-0.8
1,608,836	+				-1.6
1,608,836	+				-0.5
1,608,836	+				-1.0
1,608,836	+				-1.6
1,608,837	-				+0.3
1,608,837	-				-1.2
1,608,837	-				-1.4
1,608,837	-				+0.3
1,608,837	-				+0.9
1,608,837	-				+0.5
1,608,837	-				+0.6
1,608,855	+				-1.6
1,608,855	+				-1.9
1,608,855	+				-0.2
1,608,855	+				-0.2
1,608,855	+				-1.2
1,608,856	-				+0.6
1,608,856	-				-0.7
1,608,859	+				-1.9
1,608,859	+				-1.0
1,608,860	-				-0.9
1,608,860	-				-0.2
1,608,860	-				-0.7
1,608,877	+				-0.5
1,608,877	+				-1.2
1,608,877	+				-3.2
1,608,878	-				+0.5
1,608,878	-				+0.8
1,608,938	+				+0.8
1,608,938	+				-1.9
1,608,939	-				-0.0
1,608,939	-				-0.4
1,608,939	-				+0.2
1,608,971	+				-1.2
1,608,971	+				-2.6
1,608,971	+				-1.0
1,608,972	-				+0.1
1,608,972	-				+0.9
1,608,972	-				+0.0
1,608,995	+				-1.9
1,608,995	+				+0.1
1,608,995	+				+1.0
1,608,995	+				+0.1
1,608,995	+				+0.6
1,608,995	+				+1.0
1,608,995	+				-0.5
1,608,995	+				+0.4
1,608,995	+				-1.0
1,608,995	+				-0.2
1,608,995	+				-0.2
1,608,995	+				-1.2
1,608,995	+				-1.5
1,608,995	+				-1.0
1,608,995	+				+1.6
1,608,996	-				-0.8
1,608,996	-				-0.5
1,608,996	-				-0.4
1,608,996	-				+0.7
1,608,996	-				-1.3
1,608,996	-				+0.3
1,608,996	-				+0.6
1,608,996	-				-0.0
1,608,996	-				+1.4
1,608,996	-				+0.0
1,608,996	-				+0.0
1,608,996	-				-0.6
1,608,996	-				-1.0
1,608,996	-				-0.1
1,608,996	-				+0.1
1,608,996	-				-0.2
1,609,009	+				-0.5
1,609,030	+		PFLU_RS07215	0.10	+0.8
1,609,030	+		PFLU_RS07215	0.10	-1.5
1,609,030	+		PFLU_RS07215	0.10	+0.5
1,609,030	+		PFLU_RS07215	0.10	-1.0
1,609,030	+		PFLU_RS07215	0.10	-2.4
1,609,031	-		PFLU_RS07215	0.10	-0.3
1,609,031	-		PFLU_RS07215	0.10	+1.7
1,609,031	-		PFLU_RS07215	0.10	+0.3
1,609,031	-		PFLU_RS07215	0.10	-0.5
1,609,031	-		PFLU_RS07215	0.10	-2.3
1,609,056	+		PFLU_RS07215	0.16	-0.5
1,609,056	+		PFLU_RS07215	0.16	-1.6
1,609,056	+		PFLU_RS07215	0.16	-1.9
1,609,057	-		PFLU_RS07215	0.16	-0.8
1,609,057	-		PFLU_RS07215	0.16	-0.2
1,609,057	-		PFLU_RS07215	0.16	+0.4
1,609,057	-		PFLU_RS07215	0.16	-0.1
1,609,106	+		PFLU_RS07215	0.28	-0.8
1,609,107	-		PFLU_RS07215	0.28	+0.6
1,609,107	-		PFLU_RS07215	0.28	+0.2
1,609,129	+		PFLU_RS07215	0.33	-2.1
1,609,129	+		PFLU_RS07215	0.33	-0.5
1,609,130	-		PFLU_RS07215	0.33	+0.4
1,609,130	-		PFLU_RS07215	0.33	-0.1
1,609,130	-		PFLU_RS07215	0.33	-1.1
1,609,130	-		PFLU_RS07215	0.33	+0.2
1,609,137	+		PFLU_RS07215	0.35	-2.1
1,609,137	+		PFLU_RS07215	0.35	-1.6
1,609,137	+		PFLU_RS07215	0.35	+1.8
1,609,137	+		PFLU_RS07215	0.35	+0.2
1,609,137	+		PFLU_RS07215	0.35	-0.9
1,609,272	+		PFLU_RS07215	0.66	+0.8
1,609,272	+		PFLU_RS07215	0.66	-2.1
1,609,273	-		PFLU_RS07215	0.67	+0.3
1,609,273	-		PFLU_RS07215	0.67	+1.1