Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07135

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,593,296	+		PFLU_RS07130	0.75	+0.6
1,593,296	+		PFLU_RS07130	0.75	-0.2
1,593,297	-		PFLU_RS07130	0.75	-1.8
1,593,375	+		PFLU_RS07130	0.78	+2.1
1,593,376	-		PFLU_RS07130	0.78	+0.2
1,593,376	-		PFLU_RS07130	0.78	+1.8
1,593,378	+		PFLU_RS07130	0.78	+0.6
1,593,379	-		PFLU_RS07130	0.78	-1.0
1,593,395	+		PFLU_RS07130	0.78	-0.3
1,593,395	+		PFLU_RS07130	0.78	-1.4
1,593,396	-		PFLU_RS07130	0.78	+0.1
1,593,520	+		PFLU_RS07130	0.82	+1.5
1,593,521	-		PFLU_RS07130	0.82	-0.2
1,593,555	-		PFLU_RS07130	0.84	+0.8
1,593,601	+		PFLU_RS07130	0.85	+0.0
1,593,602	-		PFLU_RS07130	0.85	-0.1
1,593,755	+		PFLU_RS07130	0.90	-0.4
1,593,756	-		PFLU_RS07130	0.90	-0.1
1,593,756	-		PFLU_RS07130	0.90	+1.5
1,593,768	-				+0.0
1,593,768	-				-0.1
1,593,805	+				+0.3
1,593,805	+				-0.2
1,593,805	+				+0.3
1,593,806	-				+0.5
1,593,806	-				-0.0
1,593,849	+				-0.2
1,593,849	+				-0.2
1,593,849	+				-1.1
1,593,849	+				+0.2
1,593,849	+				+0.1
1,593,849	+				-0.3
1,593,849	+				-0.8
1,593,849	+				-1.0
1,593,849	+				-0.1
1,593,849	+				-0.3
1,593,849	+				+0.8
1,593,849	+				+0.8
1,593,849	+				+1.8
1,593,849	+				-1.2
1,593,849	+				-0.4
1,593,849	+				-0.7
1,593,849	+				+1.0
1,593,849	+				-0.5
1,593,849	+				-0.5
1,593,849	+				+1.0
1,593,849	+				-0.5
1,593,849	+				+1.8
1,593,849	+				+0.8
1,593,849	+				-0.1
1,593,849	+				-0.2
1,593,850	-				+2.0
1,593,850	-				+0.6
1,593,850	-				+0.4
1,593,850	-				-1.0
1,593,850	-				-0.5
1,593,850	-				-0.7
1,593,850	-				+0.8
1,593,850	-				+0.9
1,593,850	-				+0.0
1,593,850	-				+1.4
1,593,850	-				+0.2
1,593,850	-				+0.3
1,593,850	-				-0.6
1,593,850	-				+0.1
1,593,850	-				+0.8
1,593,850	-				+0.0
1,593,850	-				-1.4
1,593,850	-				-2.0
1,593,850	-				-0.1
1,593,850	-				-0.4
1,593,850	-				-0.2
1,593,850	-				-2.0
1,593,850	-				-0.5
1,593,854	+				-0.5
1,593,930	+				+0.2
1,593,949	+				-0.2
1,593,949	+				+1.4
1,593,949	+				-1.0
1,593,949	+				-0.4
1,593,950	-				+1.1
1,593,950	-				-0.7
1,593,950	-				+0.0
1,593,950	-				-0.3
1,593,994	-				+0.6
1,594,122	+				-1.2
1,594,122	+				-2.9
1,594,122	+				-0.7
1,594,122	+				+0.0
1,594,122	+				-0.8
1,594,122	+				+0.2
1,594,122	+				+0.4
1,594,123	-				+0.0
1,594,123	-				+0.0
1,594,123	-				-0.1
1,594,123	-				+0.0
1,594,123	-				-0.0
1,594,123	-				+0.5
1,594,123	-				+0.9
1,594,123	-				+0.7
1,594,124	+				+1.3
1,594,124	+				-1.1
1,594,124	+				-0.1
1,594,124	+				+0.4
1,594,124	+				+0.6
1,594,124	+				+0.3
1,594,124	+				-2.1
1,594,124	+				+0.6
1,594,124	+				+1.2
1,594,124	+				+1.0
1,594,124	+				-0.3
1,594,124	+				-1.4
1,594,124	+				-1.2
1,594,125	-				-0.9
1,594,125	-				-0.3
1,594,125	-				+0.8
1,594,125	-				+0.0
1,594,125	-				+0.0
1,594,125	-				-0.3
1,594,125	-				-0.9
1,594,125	-				-0.4
1,594,125	-				+0.2
1,594,125	-				-0.5
1,594,125	-				-0.9
1,594,125	-				+0.7
1,594,125	-				+0.3
1,594,125	-				-0.4
1,594,137	+				-0.4
1,594,137	+				+0.6
1,594,137	+				-0.5
1,594,137	+				-0.2
1,594,138	-				+1.6
1,594,138	-				+0.5
1,594,153	+				+0.8
1,594,154	-				-1.4
1,594,638	-		PFLU_RS07135	0.38	+1.0
1,594,643	+		PFLU_RS07135	0.39	-1.3
1,594,785	+		PFLU_RS07135	0.53	-0.5
1,594,785	+		PFLU_RS07135	0.53	-0.4
1,594,786	-		PFLU_RS07135	0.53	+1.1
1,594,786	-		PFLU_RS07135	0.53	-2.3
1,594,786	-		PFLU_RS07135	0.53	-1.0
1,594,786	-		PFLU_RS07135	0.53	+0.7
1,594,912	+		PFLU_RS07135	0.65	+0.3
1,594,913	-		PFLU_RS07135	0.65	+1.1
1,594,964	+		PFLU_RS07135	0.70	-0.1
1,594,964	+		PFLU_RS07135	0.70	+1.3
1,594,965	-		PFLU_RS07135	0.70	+0.6
1,595,078	+		PFLU_RS07135	0.81	-1.9
1,595,078	+		PFLU_RS07135	0.81	-1.1
1,595,079	-		PFLU_RS07135	0.81	+2.2
1,595,079	-		PFLU_RS07135	0.81	+0.8
1,595,079	-		PFLU_RS07135	0.81	+0.4
1,595,178	+				+1.0
1,595,178	+				-0.8
1,595,178	+				+0.3
1,595,178	+				+0.6
1,595,178	+				+0.4
1,595,178	+				-1.5
1,595,178	+				+0.4
1,595,178	+				+0.1
1,595,178	+				-0.7
1,595,178	+				-0.8
1,595,178	+				+1.2
1,595,178	+				-0.2
1,595,179	-				+1.0
1,595,179	-				+0.6
1,595,179	-				+0.5
1,595,179	-				+2.6
1,595,179	-				-0.1
1,595,179	-				+0.9
1,595,179	-				+0.1
1,595,179	-				-0.4
1,595,179	-				-1.5
1,595,179	-				+0.0
1,595,179	-				-0.6
1,595,254	+				+0.4
1,595,254	+				+1.0
1,595,309	-				-0.1
1,595,451	+		PFLU_RS07140	0.12	+0.7
1,595,451	+		PFLU_RS07140	0.12	+0.5
1,595,451	+		PFLU_RS07140	0.12	+0.6
1,595,452	-		PFLU_RS07140	0.12	+0.7
1,595,452	-		PFLU_RS07140	0.12	+1.1
1,595,453	+		PFLU_RS07140	0.12	+0.2
1,595,453	+		PFLU_RS07140	0.12	-0.9
1,595,454	-		PFLU_RS07140	0.12	-0.3
1,595,454	-		PFLU_RS07140	0.12	-0.8
1,595,454	-		PFLU_RS07140	0.12	-0.3
1,595,454	-		PFLU_RS07140	0.12	-0.3
1,595,503	+		PFLU_RS07140	0.16	-1.3
1,595,504	-		PFLU_RS07140	0.16	-0.5
1,595,504	-		PFLU_RS07140	0.16	-1.9
1,595,563	+		PFLU_RS07140	0.20	-0.0
1,595,563	+		PFLU_RS07140	0.20	+0.4
1,595,564	-		PFLU_RS07140	0.20	-0.5
1,595,758	+		PFLU_RS07140	0.33	-1.0
1,595,758	+		PFLU_RS07140	0.33	-0.5
1,595,759	-		PFLU_RS07140	0.33	+0.4
1,595,789	+		PFLU_RS07140	0.35	+1.2
1,595,789	+		PFLU_RS07140	0.35	-1.3
1,595,904	-		PFLU_RS07140	0.42	-1.3
1,595,938	+		PFLU_RS07140	0.44	-3.1
1,595,938	+		PFLU_RS07140	0.44	-0.3
1,595,938	+		PFLU_RS07140	0.44	+0.1
1,595,938	+		PFLU_RS07140	0.44	+0.8
1,595,938	+		PFLU_RS07140	0.44	+0.4
1,595,938	+		PFLU_RS07140	0.44	-0.8
1,595,938	+		PFLU_RS07140	0.44	+0.1
1,595,938	+		PFLU_RS07140	0.44	-0.9
1,595,938	+		PFLU_RS07140	0.44	+0.4
1,595,938	+		PFLU_RS07140	0.44	+0.1
1,595,938	+		PFLU_RS07140	0.44	+0.5
1,595,938	+		PFLU_RS07140	0.44	+0.7
1,595,938	+		PFLU_RS07140	0.44	+0.6
1,595,938	+		PFLU_RS07140	0.44	-1.6
1,595,939	-		PFLU_RS07140	0.44	-0.6
1,595,939	-		PFLU_RS07140	0.44	+0.2
1,595,939	-		PFLU_RS07140	0.44	-0.1
1,595,939	-		PFLU_RS07140	0.44	-0.1
1,595,939	-		PFLU_RS07140	0.44	+1.4
1,595,939	-		PFLU_RS07140	0.44	-0.2
1,595,939	-		PFLU_RS07140	0.44	+0.0
1,595,939	-		PFLU_RS07140	0.44	-0.4
1,595,939	-		PFLU_RS07140	0.44	+0.4
1,595,939	-		PFLU_RS07140	0.44	+0.7
1,595,960	+		PFLU_RS07140	0.46	-0.0
1,595,960	+		PFLU_RS07140	0.46	-0.1
1,595,960	+		PFLU_RS07140	0.46	+0.0
1,595,960	+		PFLU_RS07140	0.46	+0.3
1,595,960	+		PFLU_RS07140	0.46	-0.2
1,595,960	+		PFLU_RS07140	0.46	-0.3
1,595,961	-		PFLU_RS07140	0.46	+0.6
1,595,961	-		PFLU_RS07140	0.46	-1.1
1,595,961	-		PFLU_RS07140	0.46	+0.2
1,595,961	-		PFLU_RS07140	0.46	+0.2
1,595,961	-		PFLU_RS07140	0.46	+0.2
1,596,076	-		PFLU_RS07140	0.54	+0.4
1,596,076	-		PFLU_RS07140	0.54	-0.9
1,596,128	+		PFLU_RS07140	0.57	-0.2
1,596,128	+		PFLU_RS07140	0.57	-1.6
1,596,129	-		PFLU_RS07140	0.57	+0.8
1,596,129	-		PFLU_RS07140	0.57	+0.4