Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06735

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,504,293	+		PFLU_RS06725	0.78	+0.3
1,504,316	+		PFLU_RS06725	0.81	-2.3
1,504,316	+		PFLU_RS06725	0.81	-0.7
1,504,316	+		PFLU_RS06725	0.81	-1.8
1,504,329	-		PFLU_RS06725	0.82	+0.6
1,504,329	-		PFLU_RS06725	0.82	+0.3
1,504,330	+		PFLU_RS06725	0.82	-0.1
1,504,352	+		PFLU_RS06725	0.85	-0.5
1,504,353	-		PFLU_RS06725	0.85	-0.3
1,504,353	-		PFLU_RS06725	0.85	-0.4
1,504,353	-		PFLU_RS06725	0.85	+0.9
1,504,412	+				-2.1
1,504,412	+				-0.5
1,504,412	+				+0.3
1,504,412	+				-0.1
1,504,412	+				+0.5
1,504,412	+				+1.6
1,504,412	+				-0.9
1,504,412	+				-1.8
1,504,412	+				-0.7
1,504,412	+				-0.3
1,504,412	+				-0.2
1,504,412	+				+0.4
1,504,412	+				+1.2
1,504,413	-				-0.1
1,504,413	-				-1.0
1,504,413	-				+0.5
1,504,413	-				+0.6
1,504,413	-				-1.5
1,504,413	-				-1.7
1,504,413	-				+0.7
1,504,413	-				-0.5
1,504,413	-				+1.5
1,504,413	-				-0.5
1,504,413	-				+1.2
1,504,413	-				-0.5
1,504,413	-				+1.3
1,504,413	-				+0.2
1,504,486	+				+0.1
1,504,486	+				-0.7
1,504,486	+				-0.5
1,504,486	+				+0.1
1,504,487	-				+2.3
1,504,616	+		PFLU_RS06730	0.17	+0.4
1,504,617	-		PFLU_RS06730	0.18	+1.4
1,504,624	+		PFLU_RS06730	0.18	+0.2
1,504,624	+		PFLU_RS06730	0.18	-0.8
1,504,624	+		PFLU_RS06730	0.18	-0.7
1,504,624	+		PFLU_RS06730	0.18	-0.6
1,504,624	+		PFLU_RS06730	0.18	-1.0
1,504,624	+		PFLU_RS06730	0.18	-1.9
1,504,624	+		PFLU_RS06730	0.18	+0.3
1,504,624	+		PFLU_RS06730	0.18	+0.5
1,504,624	+		PFLU_RS06730	0.18	+0.4
1,504,625	-		PFLU_RS06730	0.19	-0.1
1,504,625	-		PFLU_RS06730	0.19	-0.3
1,504,625	-		PFLU_RS06730	0.19	-1.7
1,504,625	-		PFLU_RS06730	0.19	-0.3
1,504,625	-		PFLU_RS06730	0.19	+0.4
1,504,625	-		PFLU_RS06730	0.19	+0.3
1,504,625	-		PFLU_RS06730	0.19	+0.2
1,504,709	+		PFLU_RS06730	0.29	-0.5
1,504,709	+		PFLU_RS06730	0.29	-1.1
1,504,829	-		PFLU_RS06730	0.45	-0.2
1,504,829	-		PFLU_RS06730	0.45	-0.0
1,504,829	-		PFLU_RS06730	0.45	+0.3
1,504,990	-		PFLU_RS06730	0.65	+2.1
1,504,990	-		PFLU_RS06730	0.65	+0.2
1,504,990	-		PFLU_RS06730	0.65	-0.8
1,505,029	-		PFLU_RS06730	0.70	+0.4
1,505,029	-		PFLU_RS06730	0.70	-1.1
1,505,029	-		PFLU_RS06730	0.70	-0.6
1,505,273	+				-0.3
1,505,273	+				+0.5
1,505,273	+				+0.0
1,505,274	-				+0.8
1,505,274	-				+0.6
1,505,274	-				+0.6
1,505,291	+				-0.7
1,505,538	-		PFLU_RS06735	0.23	+1.3
1,505,706	-		PFLU_RS06735	0.37	+0.1
1,505,706	-		PFLU_RS06735	0.37	-2.9
1,505,706	-		PFLU_RS06735	0.37	+0.7
1,505,706	-		PFLU_RS06735	0.37	+2.2
1,505,730	+		PFLU_RS06735	0.39	+0.4
1,505,778	+		PFLU_RS06735	0.43	-0.7
1,505,778	+		PFLU_RS06735	0.43	+1.6
1,505,778	+		PFLU_RS06735	0.43	+0.0
1,505,779	-		PFLU_RS06735	0.43	+0.9
1,505,779	-		PFLU_RS06735	0.43	+0.5
1,505,779	-		PFLU_RS06735	0.43	-0.5
1,505,779	-		PFLU_RS06735	0.43	-1.1
1,505,779	-		PFLU_RS06735	0.43	-2.2
1,505,779	-		PFLU_RS06735	0.43	-0.1
1,505,779	-		PFLU_RS06735	0.43	-0.1
1,506,456	+				+0.6
1,506,456	+				+0.4
1,506,456	+				+0.7
1,506,456	+				+1.4
1,506,456	+				+1.1
1,506,456	+				+0.0
1,506,456	+				-0.7
1,506,456	+				-0.8
1,506,457	-				-0.4
1,506,457	-				+0.1
1,506,457	-				+0.4
1,506,457	-				-0.5
1,506,457	-				-0.4
1,506,457	-				-0.9
1,506,459	+				-0.0
1,506,459	+				-1.8
1,506,459	+				-0.1
1,506,460	-				+1.6
1,506,460	-				+0.4
1,506,460	-				+0.2
1,506,460	-				+0.6
1,506,528	-				+0.8
1,506,788	+		PFLU_RS06740	0.44	-0.7
1,506,788	+		PFLU_RS06740	0.44	-1.0
1,506,788	+		PFLU_RS06740	0.44	+0.7
1,506,876	-		PFLU_RS06740	0.57	+0.6
1,506,946	+		PFLU_RS06740	0.67	-0.6
1,506,946	+		PFLU_RS06740	0.67	+0.4
1,507,001	+		PFLU_RS06740	0.74	-1.5
1,507,001	+		PFLU_RS06740	0.74	-0.1
1,507,001	+		PFLU_RS06740	0.74	+0.6
1,507,001	+		PFLU_RS06740	0.74	-1.4
1,507,001	+		PFLU_RS06740	0.74	-1.3
1,507,001	+		PFLU_RS06740	0.74	-0.1
1,507,001	+		PFLU_RS06740	0.74	+0.4
1,507,001	+		PFLU_RS06740	0.74	-0.6
1,507,001	+		PFLU_RS06740	0.74	+0.2
1,507,001	+		PFLU_RS06740	0.74	-0.8
1,507,001	+		PFLU_RS06740	0.74	+0.4
1,507,002	-		PFLU_RS06740	0.75	+1.1
1,507,002	-		PFLU_RS06740	0.75	+0.1
1,507,002	-		PFLU_RS06740	0.75	-1.6
1,507,002	-		PFLU_RS06740	0.75	+0.8
1,507,002	-		PFLU_RS06740	0.75	-0.1
1,507,002	-		PFLU_RS06740	0.75	-1.1
1,507,002	-		PFLU_RS06740	0.75	-0.5
1,507,002	-		PFLU_RS06740	0.75	-0.1
1,507,002	-		PFLU_RS06740	0.75	+0.2
1,507,002	-		PFLU_RS06740	0.75	+0.9
1,507,002	-		PFLU_RS06740	0.75	+0.9
1,507,002	-		PFLU_RS06740	0.75	+0.8
1,507,002	-		PFLU_RS06740	0.75	+0.1
1,507,028	+		PFLU_RS06740	0.78	+1.6
1,507,028	+		PFLU_RS06740	0.78	+0.2
1,507,029	-		PFLU_RS06740	0.78	+0.1
1,507,029	-		PFLU_RS06740	0.78	+0.5
1,507,040	+		PFLU_RS06740	0.80	+1.1
1,507,040	+		PFLU_RS06740	0.80	+0.2
1,507,040	+		PFLU_RS06740	0.80	-0.3
1,507,041	-		PFLU_RS06740	0.80	+0.5
1,507,041	-		PFLU_RS06740	0.80	-0.1
1,507,115	+				+1.3
1,507,115	+				+0.1
1,507,116	-				-0.1
1,507,116	-				+1.2
1,507,222	-				+0.1
1,507,224	+				-0.9
1,507,225	-				-0.4
1,507,225	-				+0.9
1,507,225	-				-0.2
1,507,225	-				+0.1
1,507,225	-				-0.1
1,507,380	+		PFLU_RS06745	0.35	+0.3
1,507,380	+		PFLU_RS06745	0.35	-2.2
1,507,380	+		PFLU_RS06745	0.35	+0.5
1,507,380	+		PFLU_RS06745	0.35	+0.3
1,507,380	+		PFLU_RS06745	0.35	+0.3
1,507,380	+		PFLU_RS06745	0.35	+0.2
1,507,381	-		PFLU_RS06745	0.35	-1.5
1,507,381	-		PFLU_RS06745	0.35	-0.2
1,507,381	-		PFLU_RS06745	0.35	+0.0
1,507,381	-		PFLU_RS06745	0.35	-0.1
1,507,381	-		PFLU_RS06745	0.35	+0.3