Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04780

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,070,190	+		PFLU_RS04775	0.38	-0.3
1,070,190	+		PFLU_RS04775	0.38	+0.9
1,070,191	-		PFLU_RS04775	0.38	+1.4
1,070,192	+		PFLU_RS04775	0.38	-0.3
1,070,192	+		PFLU_RS04775	0.38	+0.7
1,070,192	+		PFLU_RS04775	0.38	+1.1
1,070,192	+		PFLU_RS04775	0.38	+0.1
1,070,192	+		PFLU_RS04775	0.38	-1.5
1,070,192	+		PFLU_RS04775	0.38	-0.7
1,070,192	+		PFLU_RS04775	0.38	+0.4
1,070,192	+		PFLU_RS04775	0.38	+0.7
1,070,192	+		PFLU_RS04775	0.38	-1.4
1,070,192	+		PFLU_RS04775	0.38	+0.7
1,070,192	+		PFLU_RS04775	0.38	+0.0
1,070,192	+		PFLU_RS04775	0.38	+0.4
1,070,192	+		PFLU_RS04775	0.38	+0.5
1,070,192	+		PFLU_RS04775	0.38	+0.9
1,070,192	+		PFLU_RS04775	0.38	+0.1
1,070,192	+		PFLU_RS04775	0.38	+0.3
1,070,192	+		PFLU_RS04775	0.38	-1.7
1,070,192	+		PFLU_RS04775	0.38	+0.8
1,070,192	+		PFLU_RS04775	0.38	-1.4
1,070,192	+		PFLU_RS04775	0.38	-0.0
1,070,192	+		PFLU_RS04775	0.38	+1.3
1,070,192	+		PFLU_RS04775	0.38	-1.2
1,070,192	+		PFLU_RS04775	0.38	+0.1
1,070,192	+		PFLU_RS04775	0.38	-0.7
1,070,193	-		PFLU_RS04775	0.38	+0.1
1,070,193	-		PFLU_RS04775	0.38	+1.0
1,070,193	-		PFLU_RS04775	0.38	+0.1
1,070,193	-		PFLU_RS04775	0.38	-1.3
1,070,193	-		PFLU_RS04775	0.38	-0.2
1,070,193	-		PFLU_RS04775	0.38	+1.8
1,070,193	-		PFLU_RS04775	0.38	+0.6
1,070,193	-		PFLU_RS04775	0.38	+0.6
1,070,193	-		PFLU_RS04775	0.38	+1.2
1,070,193	-		PFLU_RS04775	0.38	+0.8
1,070,193	-		PFLU_RS04775	0.38	-0.6
1,070,193	-		PFLU_RS04775	0.38	+0.5
1,070,193	-		PFLU_RS04775	0.38	+0.1
1,070,193	-		PFLU_RS04775	0.38	-0.3
1,070,193	-		PFLU_RS04775	0.38	-1.8
1,070,193	-		PFLU_RS04775	0.38	-0.1
1,070,193	-		PFLU_RS04775	0.38	+1.0
1,070,193	-		PFLU_RS04775	0.38	-1.1
1,070,193	-		PFLU_RS04775	0.38	+0.8
1,070,337	+		PFLU_RS04775	0.51	-2.1
1,070,338	-		PFLU_RS04775	0.51	+1.1
1,070,338	-		PFLU_RS04775	0.51	+0.9
1,070,338	-		PFLU_RS04775	0.51	+1.0
1,070,338	-		PFLU_RS04775	0.51	+0.6
1,070,396	+		PFLU_RS04775	0.56	-1.3
1,070,397	-		PFLU_RS04775	0.56	-0.4
1,070,397	-		PFLU_RS04775	0.56	+0.4
1,070,397	-		PFLU_RS04775	0.56	+0.3
1,070,486	+		PFLU_RS04775	0.63	+0.5
1,070,486	+		PFLU_RS04775	0.63	-0.0
1,070,486	+		PFLU_RS04775	0.63	+1.1
1,070,486	+		PFLU_RS04775	0.63	-0.2
1,070,486	+		PFLU_RS04775	0.63	+0.0
1,070,486	+		PFLU_RS04775	0.63	-2.3
1,070,486	+		PFLU_RS04775	0.63	+0.8
1,070,486	+		PFLU_RS04775	0.63	+0.3
1,070,486	+		PFLU_RS04775	0.63	+0.1
1,070,486	+		PFLU_RS04775	0.63	-0.7
1,070,486	+		PFLU_RS04775	0.63	-0.4
1,070,487	-		PFLU_RS04775	0.63	+0.1
1,070,487	-		PFLU_RS04775	0.63	+1.5
1,070,487	-		PFLU_RS04775	0.63	+0.6
1,070,487	-		PFLU_RS04775	0.63	-0.1
1,070,487	-		PFLU_RS04775	0.63	+0.4
1,070,487	-		PFLU_RS04775	0.63	-0.7
1,070,487	-		PFLU_RS04775	0.63	+0.9
1,070,487	-		PFLU_RS04775	0.63	-0.4
1,070,487	-		PFLU_RS04775	0.63	+0.9
1,070,528	+		PFLU_RS04775	0.67	+0.0
1,070,528	+		PFLU_RS04775	0.67	+0.0
1,070,528	+		PFLU_RS04775	0.67	-0.0
1,070,529	-		PFLU_RS04775	0.67	-0.7
1,070,692	-		PFLU_RS04775	0.81	-1.0
1,070,710	+		PFLU_RS04775	0.83	-1.5
1,070,711	-		PFLU_RS04775	0.83	+0.1
1,070,711	-		PFLU_RS04775	0.83	+1.8
1,070,711	-		PFLU_RS04775	0.83	+0.0
1,070,711	-		PFLU_RS04775	0.83	-1.5
1,070,711	-		PFLU_RS04775	0.83	+0.3
1,070,711	-		PFLU_RS04775	0.83	-0.4
1,070,958	+				-0.4
1,070,959	-				-0.5
1,070,959	-				+0.7
1,070,959	-				+1.3
1,070,960	+				+1.0
1,070,960	+				+0.5
1,070,960	+				+0.1
1,070,960	+				+0.5
1,070,961	-				+0.8
1,070,961	-				-1.8
1,070,961	-				-0.8
1,070,992	+				-0.4
1,070,993	-				+0.5
1,070,993	-				-0.0
1,071,011	+				-0.5
1,071,028	+				+0.8
1,071,029	-				-0.2
1,071,029	-				+0.1
1,071,062	+				-0.4
1,071,062	+				-0.7
1,071,062	+				+0.5
1,071,062	+				-0.2
1,071,062	+				+0.6
1,071,062	+				+1.8
1,071,063	-				+1.1
1,071,063	-				+0.4
1,071,063	-				-0.3
1,071,063	-				+0.2
1,071,063	-				-1.5
1,071,063	-				-0.3
1,071,063	-				+0.4
1,071,064	+				+0.7
1,071,064	+				+0.8
1,071,064	+				+0.9
1,071,065	+				-2.0
1,071,065	-				+0.2
1,071,065	-				+0.3
1,071,065	-				+1.2
1,071,278	+		PFLU_RS04780	0.64	-0.4
1,071,278	+		PFLU_RS04780	0.64	-0.6
1,071,279	-		PFLU_RS04780	0.65	+0.5
1,071,279	-		PFLU_RS04780	0.65	-0.4
1,071,279	-		PFLU_RS04780	0.65	+0.1
1,071,304	+		PFLU_RS04780	0.75	+0.3
1,071,352	+				-1.1
1,071,359	+				-0.8
1,071,365	+				-2.0
1,071,375	+				+0.5
1,071,376	-				-0.9
1,071,376	-				+1.1
1,071,379	-				+0.7
1,071,396	+				+0.1
1,071,396	+				-0.9
1,071,396	+				-2.3
1,071,397	-				-0.6
1,071,397	-				+0.1
1,071,411	+				+0.2
1,071,411	+				+0.6
1,071,412	-				+0.5
1,071,412	-				-0.5
1,071,412	-				-0.0
1,071,536	+				-0.3
1,071,536	+				+0.7
1,071,537	-				-0.1
1,071,537	-				-0.7
1,071,548	+				+0.2
1,071,729	+		PFLU_RS04785	0.26	+0.3
1,071,729	+		PFLU_RS04785	0.26	+0.4
1,071,730	-		PFLU_RS04785	0.26	+0.0
1,071,782	+		PFLU_RS04785	0.33	+0.2
1,071,782	+		PFLU_RS04785	0.33	+1.1
1,071,782	+		PFLU_RS04785	0.33	-0.5
1,071,783	-		PFLU_RS04785	0.33	-0.5
1,071,853	+		PFLU_RS04785	0.42	-1.0
1,071,938	+		PFLU_RS04785	0.53	-0.8
1,071,938	+		PFLU_RS04785	0.53	-0.9
1,071,951	+		PFLU_RS04785	0.55	+0.2
1,071,951	+		PFLU_RS04785	0.55	+1.4
1,071,952	-		PFLU_RS04785	0.55	-0.1
1,072,239	+				-0.0
1,072,277	-				-0.0
1,072,333	-				-0.1
1,072,351	+				+0.6
1,072,359	+				+0.3
1,072,359	+				-0.8
1,072,359	+				+0.2
1,072,359	+				+0.5
1,072,359	+				-1.3
1,072,359	+				-1.2
1,072,359	+				-0.2
1,072,360	-				+0.7
1,072,360	-				+1.4
1,072,360	-				-0.3
1,072,360	-				-1.4