Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03715 and PFLU_RS03720 are separated by 0 nucleotides PFLU_RS03720 and PFLU_RS03725 are separated by 3 nucleotides PFLU_RS03725 and PFLU_RS03730 are separated by 111 nucleotides PFLU_RS03730 and PFLU_RS03735 overlap by 4 nucleotides
PFLU_RS03715: PFLU_RS03715 - deoxyribodipyrimidine photo-lyase, at 848,593 to 850,038
_RS03715
PFLU_RS03720: PFLU_RS03720 - MerR family transcriptional regulator, at 850,039 to 850,968
_RS03720
PFLU_RS03725: PFLU_RS03725 - DUF1722 domain-containing protein, at 850,972 to 851,931
_RS03725
PFLU_RS03730: PFLU_RS03730 - TIGR02450 family Trp-rich protein, at 852,043 to 852,258
_RS03730
PFLU_RS03735: PFLU_RS03735 - NAD(P)/FAD-dependent oxidoreductase, at 852,255 to 853,241
_RS03735
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 850.040 kb on + strand at 850.040 kb on + strand at 850.040 kb on + strand at 850.040 kb on + strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.063 kb on + strand at 850.063 kb on + strand at 850.063 kb on + strand at 850.064 kb on - strand at 850.064 kb on - strand at 850.120 kb on + strand at 850.123 kb on + strand at 850.123 kb on + strand at 850.123 kb on + strand at 850.124 kb on - strand at 850.124 kb on - strand at 850.124 kb on - strand at 850.150 kb on + strand, within PFLU_RS03720 at 850.151 kb on - strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.236 kb on - strand, within PFLU_RS03720 at 850.236 kb on - strand, within PFLU_RS03720 at 850.351 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.438 kb on - strand, within PFLU_RS03720 at 850.438 kb on - strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.768 kb on - strand, within PFLU_RS03720 at 850.768 kb on - strand, within PFLU_RS03720 at 850.951 kb on + strand at 850.951 kb on + strand at 850.951 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.974 kb on - strand at 850.974 kb on - strand at 851.019 kb on - strand at 851.019 kb on - strand at 851.019 kb on - strand at 851.036 kb on + strand at 851.036 kb on + strand at 851.036 kb on + strand at 851.037 kb on - strand at 851.037 kb on - strand at 851.112 kb on - strand, within PFLU_RS03725 at 851.252 kb on + strand, within PFLU_RS03725 at 851.252 kb on + strand, within PFLU_RS03725 at 851.253 kb on - strand, within PFLU_RS03725 at 851.253 kb on - strand, within PFLU_RS03725 at 851.253 kb on - strand, within PFLU_RS03725 at 851.321 kb on + strand, within PFLU_RS03725 at 851.321 kb on + strand, within PFLU_RS03725 at 851.321 kb on + strand, within PFLU_RS03725 at 851.322 kb on - strand, within PFLU_RS03725 at 851.347 kb on + strand, within PFLU_RS03725 at 851.347 kb on + strand, within PFLU_RS03725 at 851.347 kb on + strand, within PFLU_RS03725 at 851.347 kb on + strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.348 kb on - strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.351 kb on + strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.352 kb on - strand, within PFLU_RS03725 at 851.426 kb on + strand, within PFLU_RS03725 at 851.531 kb on + strand, within PFLU_RS03725 at 851.532 kb on - strand, within PFLU_RS03725 at 851.532 kb on - strand, within PFLU_RS03725 at 851.532 kb on - strand, within PFLU_RS03725 at 851.532 kb on - strand, within PFLU_RS03725 at 851.532 kb on - strand, within PFLU_RS03725 at 851.577 kb on - strand, within PFLU_RS03725 at 851.669 kb on + strand, within PFLU_RS03725 at 851.754 kb on + strand, within PFLU_RS03725 at 851.816 kb on + strand, within PFLU_RS03725 at 851.931 kb on + strand at 851.931 kb on + strand at 851.931 kb on + strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.932 kb on - strand at 851.975 kb on + strand at 851.976 kb on - strand at 851.981 kb on + strand at 851.981 kb on + strand at 851.981 kb on + strand at 851.981 kb on + strand at 851.982 kb on - strand at 851.982 kb on - strand at 851.993 kb on + strand at 851.993 kb on + strand at 851.993 kb on + strand at 851.993 kb on + strand at 851.993 kb on + strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 851.994 kb on - strand at 852.025 kb on + strand at 852.025 kb on + strand at 852.026 kb on - strand at 852.045 kb on - strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.409 kb on + strand, within PFLU_RS03735 at 852.410 kb on - strand, within PFLU_RS03735 at 852.410 kb on - strand, within PFLU_RS03735 at 852.560 kb on + strand, within PFLU_RS03735 at 852.650 kb on + strand, within PFLU_RS03735
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 850,040 + +0.9 850,040 + +1.0 850,040 + -0.1 850,040 + +0.6 850,041 - -1.5 850,041 - -0.0 850,041 - -0.8 850,041 - +0.2 850,063 + +0.7 850,063 + +0.5 850,063 + +0.9 850,064 - +0.2 850,064 - +1.1 850,120 + -0.6 850,123 + +0.9 850,123 + -0.7 850,123 + -0.8 850,124 - +0.3 850,124 - -0.6 850,124 - +0.3 850,150 + PFLU_RS03720 0.12 -0.3 850,151 - PFLU_RS03720 0.12 -0.3 850,235 + PFLU_RS03720 0.21 -0.4 850,235 + PFLU_RS03720 0.21 +0.3 850,235 + PFLU_RS03720 0.21 -0.1 850,236 - PFLU_RS03720 0.21 +0.4 850,236 - PFLU_RS03720 0.21 -0.6 850,351 + PFLU_RS03720 0.34 +1.1 850,433 + PFLU_RS03720 0.42 -0.0 850,433 + PFLU_RS03720 0.42 +0.6 850,433 + PFLU_RS03720 0.42 -0.6 850,433 + PFLU_RS03720 0.42 -0.5 850,433 + PFLU_RS03720 0.42 +0.1 850,433 + PFLU_RS03720 0.42 -0.9 850,434 - PFLU_RS03720 0.42 -2.4 850,434 - PFLU_RS03720 0.42 -0.0 850,434 - PFLU_RS03720 0.42 -0.5 850,434 - PFLU_RS03720 0.42 -0.3 850,434 - PFLU_RS03720 0.42 +0.8 850,434 - PFLU_RS03720 0.42 +0.4 850,434 - PFLU_RS03720 0.42 -0.3 850,434 - PFLU_RS03720 0.42 +0.1 850,437 + PFLU_RS03720 0.43 -0.2 850,437 + PFLU_RS03720 0.43 +0.4 850,437 + PFLU_RS03720 0.43 +1.4 850,438 - PFLU_RS03720 0.43 +0.5 850,438 - PFLU_RS03720 0.43 -0.1 850,767 + PFLU_RS03720 0.78 -1.4 850,767 + PFLU_RS03720 0.78 -0.1 850,767 + PFLU_RS03720 0.78 -0.0 850,767 + PFLU_RS03720 0.78 -1.0 850,767 + PFLU_RS03720 0.78 -0.2 850,767 + PFLU_RS03720 0.78 -0.7 850,767 + PFLU_RS03720 0.78 -1.1 850,768 - PFLU_RS03720 0.78 -1.4 850,768 - PFLU_RS03720 0.78 -1.0 850,951 + +0.9 850,951 + -0.1 850,951 + +0.3 850,973 + -1.4 850,973 + +0.3 850,973 + +0.5 850,973 + +2.2 850,973 + +0.2 850,973 + -0.1 850,974 - +0.6 850,974 - +1.0 851,019 - +0.4 851,019 - -0.4 851,019 - -0.7 851,036 + -0.1 851,036 + -1.2 851,036 + +0.5 851,037 - -0.5 851,037 - -1.3 851,112 - PFLU_RS03725 0.15 -0.3 851,252 + PFLU_RS03725 0.29 +1.0 851,252 + PFLU_RS03725 0.29 -1.1 851,253 - PFLU_RS03725 0.29 -2.3 851,253 - PFLU_RS03725 0.29 -0.1 851,253 - PFLU_RS03725 0.29 -0.1 851,321 + PFLU_RS03725 0.36 +0.3 851,321 + PFLU_RS03725 0.36 +0.1 851,321 + PFLU_RS03725 0.36 +1.3 851,322 - PFLU_RS03725 0.36 -1.2 851,347 + PFLU_RS03725 0.39 +0.4 851,347 + PFLU_RS03725 0.39 -0.3 851,347 + PFLU_RS03725 0.39 -0.0 851,347 + PFLU_RS03725 0.39 -0.1 851,348 - PFLU_RS03725 0.39 -0.9 851,348 - PFLU_RS03725 0.39 +0.6 851,348 - PFLU_RS03725 0.39 +0.7 851,348 - PFLU_RS03725 0.39 +0.6 851,348 - PFLU_RS03725 0.39 +0.4 851,348 - PFLU_RS03725 0.39 -1.1 851,351 + PFLU_RS03725 0.39 +1.4 851,351 + PFLU_RS03725 0.39 -0.7 851,351 + PFLU_RS03725 0.39 +1.2 851,351 + PFLU_RS03725 0.39 +0.8 851,351 + PFLU_RS03725 0.39 -0.5 851,351 + PFLU_RS03725 0.39 -1.9 851,351 + PFLU_RS03725 0.39 +0.3 851,352 - PFLU_RS03725 0.40 +0.6 851,352 - PFLU_RS03725 0.40 -0.2 851,352 - PFLU_RS03725 0.40 -0.6 851,352 - PFLU_RS03725 0.40 -2.4 851,352 - PFLU_RS03725 0.40 +0.7 851,352 - PFLU_RS03725 0.40 +0.5 851,352 - PFLU_RS03725 0.40 -0.5 851,426 + PFLU_RS03725 0.47 -0.2 851,531 + PFLU_RS03725 0.58 -0.1 851,532 - PFLU_RS03725 0.58 +0.1 851,532 - PFLU_RS03725 0.58 -1.2 851,532 - PFLU_RS03725 0.58 +1.2 851,532 - PFLU_RS03725 0.58 +0.3 851,532 - PFLU_RS03725 0.58 -0.3 851,577 - PFLU_RS03725 0.63 -0.9 851,669 + PFLU_RS03725 0.73 -0.1 851,754 + PFLU_RS03725 0.81 +0.2 851,816 + PFLU_RS03725 0.88 +0.2 851,931 + +0.8 851,931 + -0.1 851,931 + +1.0 851,932 - -0.8 851,932 - +0.0 851,932 - +0.3 851,932 - +0.4 851,932 - +0.5 851,932 - -1.2 851,932 - +0.8 851,975 + +0.3 851,976 - -0.2 851,981 + -1.5 851,981 + +1.0 851,981 + +0.2 851,981 + +1.5 851,982 - +0.9 851,982 - +0.6 851,993 + +0.9 851,993 + +0.4 851,993 + -0.9 851,993 + -1.2 851,993 + +1.0 851,994 - +0.2 851,994 - +0.6 851,994 - +0.1 851,994 - +0.6 851,994 - +0.4 851,994 - +0.0 851,994 - +0.7 851,994 - -1.4 852,025 + +0.6 852,025 + -0.1 852,026 - +1.2 852,045 - -0.2 852,349 + -0.1 852,349 + -0.5 852,349 + -0.1 852,349 + +0.1 852,349 + +0.2 852,349 + +0.4 852,349 + +0.8 852,349 + +0.9 852,349 + +0.9 852,349 + -0.1 852,349 + +1.2 852,349 + +0.5 852,349 + +0.4 852,349 + +0.3 852,349 + -0.8 852,349 + +1.6 852,349 + -0.2 852,349 + -0.1 852,349 + +0.9 852,349 + +0.6 852,349 + +0.5 852,349 + -0.4 852,349 + +0.3 852,349 + +0.2 852,350 - +0.2 852,350 - -0.1 852,350 - -1.0 852,350 - +0.8 852,350 - +1.3 852,350 - -1.4 852,350 - -1.0 852,350 - +0.6 852,350 - -1.1 852,350 - -0.1 852,350 - -0.4 852,350 - -0.4 852,350 - +1.7 852,350 - +2.8 852,350 - -0.6 852,350 - +0.6 852,409 + PFLU_RS03735 0.16 -0.4 852,410 - PFLU_RS03735 0.16 -0.9 852,410 - PFLU_RS03735 0.16 -0.8 852,560 + PFLU_RS03735 0.31 +0.3 852,650 + PFLU_RS03735 0.40 +1.1
Or see this region's nucleotide sequence