Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02945

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02940 and PFLU_RS02945 are separated by 93 nucleotidesPFLU_RS02945 and PFLU_RS02950 are separated by 11 nucleotidesPFLU_RS02950 and PFLU_RS02955 are separated by 46 nucleotides PFLU_RS02940: PFLU_RS02940 - TonB-dependent copper receptor, at 678,235 to 680,295 _RS02940 PFLU_RS02945: PFLU_RS02945 - DUF2946 domain-containing protein, at 680,389 to 680,778 _RS02945 PFLU_RS02950: PFLU_RS02950 - copper chaperone PCu(A)C, at 680,790 to 681,272 _RS02950 PFLU_RS02955: PFLU_RS02955 - DUF2946 domain-containing protein, at 681,319 to 681,714 _RS02955 Position (kb) 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.406 kb on + strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.407 kb on - strand, within PFLU_RS02940at 679.430 kb on + strand, within PFLU_RS02940at 679.430 kb on + strand, within PFLU_RS02940at 679.431 kb on - strand, within PFLU_RS02940at 679.431 kb on - strand, within PFLU_RS02940at 679.431 kb on - strand, within PFLU_RS02940at 679.431 kb on - strand, within PFLU_RS02940at 679.431 kb on - strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.436 kb on + strand, within PFLU_RS02940at 679.437 kb on - strand, within PFLU_RS02940at 679.437 kb on - strand, within PFLU_RS02940at 679.437 kb on - strand, within PFLU_RS02940at 679.437 kb on - strand, within PFLU_RS02940at 679.437 kb on - strand, within PFLU_RS02940at 679.439 kb on + strand, within PFLU_RS02940at 679.440 kb on - strand, within PFLU_RS02940at 679.440 kb on - strand, within PFLU_RS02940at 679.679 kb on + strand, within PFLU_RS02940at 679.679 kb on + strand, within PFLU_RS02940at 679.679 kb on + strand, within PFLU_RS02940at 679.679 kb on + strand, within PFLU_RS02940at 679.679 kb on + strand, within PFLU_RS02940at 679.680 kb on - strand, within PFLU_RS02940at 679.680 kb on - strand, within PFLU_RS02940at 679.680 kb on - strand, within PFLU_RS02940at 679.680 kb on - strand, within PFLU_RS02940at 679.714 kb on + strand, within PFLU_RS02940at 679.714 kb on + strand, within PFLU_RS02940at 679.714 kb on + strand, within PFLU_RS02940at 679.714 kb on + strand, within PFLU_RS02940at 679.714 kb on + strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.715 kb on - strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.718 kb on + strand, within PFLU_RS02940at 679.719 kb on - strand, within PFLU_RS02940at 679.719 kb on - strand, within PFLU_RS02940at 679.913 kb on + strand, within PFLU_RS02940at 679.913 kb on + strand, within PFLU_RS02940at 679.931 kb on + strand, within PFLU_RS02940at 679.931 kb on + strand, within PFLU_RS02940at 679.931 kb on + strand, within PFLU_RS02940at 679.931 kb on + strand, within PFLU_RS02940at 679.932 kb on - strand, within PFLU_RS02940at 679.932 kb on - strand, within PFLU_RS02940at 679.932 kb on - strand, within PFLU_RS02940at 680.088 kb on - strand, within PFLU_RS02940at 680.239 kb on + strandat 680.239 kb on + strandat 680.239 kb on + strandat 680.259 kb on + strandat 680.259 kb on + strandat 680.259 kb on + strandat 680.259 kb on + strandat 680.319 kb on - strandat 680.373 kb on + strandat 680.374 kb on - strandat 680.390 kb on + strandat 680.391 kb on - strandat 680.503 kb on - strand, within PFLU_RS02945at 680.541 kb on - strand, within PFLU_RS02945at 680.541 kb on - strand, within PFLU_RS02945at 680.701 kb on + strand, within PFLU_RS02945at 680.791 kb on + strandat 680.791 kb on + strandat 680.791 kb on + strandat 680.792 kb on - strandat 680.792 kb on - strandat 680.792 kb on - strandat 680.792 kb on - strandat 680.792 kb on - strandat 680.792 kb on - strandat 680.951 kb on - strand, within PFLU_RS02950at 680.951 kb on - strand, within PFLU_RS02950at 680.951 kb on - strand, within PFLU_RS02950at 681.202 kb on + strand, within PFLU_RS02950at 681.203 kb on - strand, within PFLU_RS02950at 681.203 kb on - strand, within PFLU_RS02950at 681.294 kb on + strandat 681.295 kb on - strandat 681.295 kb on - strandat 681.428 kb on + strand, within PFLU_RS02955at 681.428 kb on + strand, within PFLU_RS02955at 681.429 kb on - strand, within PFLU_RS02955at 681.429 kb on - strand, within PFLU_RS02955at 681.728 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.750 kb on + strandat 681.751 kb on - strandat 681.751 kb on - strandat 681.754 kb on + strandat 681.755 kb on - strandat 681.755 kb on - strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.776 kb on + strandat 681.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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679,406 + PFLU_RS02940 0.57 +1.9
679,406 + PFLU_RS02940 0.57 +0.6
679,406 + PFLU_RS02940 0.57 +0.8
679,406 + PFLU_RS02940 0.57 +0.1
679,406 + PFLU_RS02940 0.57 -1.8
679,406 + PFLU_RS02940 0.57 -0.7
679,406 + PFLU_RS02940 0.57 -0.4
679,407 - PFLU_RS02940 0.57 -1.8
679,407 - PFLU_RS02940 0.57 +1.3
679,407 - PFLU_RS02940 0.57 +1.4
679,407 - PFLU_RS02940 0.57 +0.2
679,407 - PFLU_RS02940 0.57 +0.3
679,407 - PFLU_RS02940 0.57 -0.4
679,407 - PFLU_RS02940 0.57 -0.8
679,407 - PFLU_RS02940 0.57 -1.6
679,430 + PFLU_RS02940 0.58 -0.2
679,430 + PFLU_RS02940 0.58 -0.0
679,431 - PFLU_RS02940 0.58 +0.4
679,431 - PFLU_RS02940 0.58 -0.1
679,431 - PFLU_RS02940 0.58 +1.2
679,431 - PFLU_RS02940 0.58 -0.9
679,431 - PFLU_RS02940 0.58 +0.1
679,436 + PFLU_RS02940 0.58 -0.8
679,436 + PFLU_RS02940 0.58 +0.9
679,436 + PFLU_RS02940 0.58 -0.3
679,436 + PFLU_RS02940 0.58 -0.3
679,436 + PFLU_RS02940 0.58 +0.2
679,436 + PFLU_RS02940 0.58 -1.4
679,437 - PFLU_RS02940 0.58 +0.9
679,437 - PFLU_RS02940 0.58 -0.6
679,437 - PFLU_RS02940 0.58 -0.2
679,437 - PFLU_RS02940 0.58 -0.1
679,437 - PFLU_RS02940 0.58 +0.6
679,439 + PFLU_RS02940 0.58 -0.5
679,440 - PFLU_RS02940 0.58 +0.4
679,440 - PFLU_RS02940 0.58 +0.8
679,679 + PFLU_RS02940 0.70 -0.1
679,679 + PFLU_RS02940 0.70 -0.2
679,679 + PFLU_RS02940 0.70 -0.1
679,679 + PFLU_RS02940 0.70 +0.8
679,679 + PFLU_RS02940 0.70 +0.8
679,680 - PFLU_RS02940 0.70 +0.1
679,680 - PFLU_RS02940 0.70 +0.2
679,680 - PFLU_RS02940 0.70 -0.0
679,680 - PFLU_RS02940 0.70 +0.3
679,714 + PFLU_RS02940 0.72 -2.2
679,714 + PFLU_RS02940 0.72 -0.9
679,714 + PFLU_RS02940 0.72 +0.1
679,714 + PFLU_RS02940 0.72 +0.3
679,714 + PFLU_RS02940 0.72 -1.8
679,715 - PFLU_RS02940 0.72 -1.5
679,715 - PFLU_RS02940 0.72 -1.1
679,715 - PFLU_RS02940 0.72 -0.4
679,715 - PFLU_RS02940 0.72 -0.0
679,715 - PFLU_RS02940 0.72 -0.6
679,715 - PFLU_RS02940 0.72 +0.8
679,715 - PFLU_RS02940 0.72 +0.3
679,718 + PFLU_RS02940 0.72 +0.2
679,718 + PFLU_RS02940 0.72 +0.1
679,718 + PFLU_RS02940 0.72 -0.5
679,718 + PFLU_RS02940 0.72 -0.4
679,718 + PFLU_RS02940 0.72 -0.9
679,718 + PFLU_RS02940 0.72 +0.9
679,718 + PFLU_RS02940 0.72 +0.8
679,719 - PFLU_RS02940 0.72 -0.4
679,719 - PFLU_RS02940 0.72 -1.0
679,913 + PFLU_RS02940 0.81 -0.9
679,913 + PFLU_RS02940 0.81 +0.7
679,931 + PFLU_RS02940 0.82 -1.0
679,931 + PFLU_RS02940 0.82 -1.9
679,931 + PFLU_RS02940 0.82 +0.6
679,931 + PFLU_RS02940 0.82 +0.1
679,932 - PFLU_RS02940 0.82 +0.9
679,932 - PFLU_RS02940 0.82 -0.6
679,932 - PFLU_RS02940 0.82 +0.2
680,088 - PFLU_RS02940 0.90 -0.9
680,239 + +0.5
680,239 + +0.7
680,239 + -0.9
680,259 + -0.8
680,259 + +0.6
680,259 + +0.4
680,259 + +0.0
680,319 - -0.3
680,373 + +0.2
680,374 - +0.3
680,390 + -0.8
680,391 - +0.0
680,503 - PFLU_RS02945 0.29 +0.1
680,541 - PFLU_RS02945 0.39 -1.2
680,541 - PFLU_RS02945 0.39 +0.5
680,701 + PFLU_RS02945 0.80 -1.2
680,791 + -0.2
680,791 + +0.8
680,791 + +0.1
680,792 - +1.3
680,792 - +1.2
680,792 - -1.3
680,792 - +0.9
680,792 - -0.5
680,792 - -1.4
680,951 - PFLU_RS02950 0.33 -0.4
680,951 - PFLU_RS02950 0.33 -0.7
680,951 - PFLU_RS02950 0.33 +1.3
681,202 + PFLU_RS02950 0.85 +0.8
681,203 - PFLU_RS02950 0.86 -0.0
681,203 - PFLU_RS02950 0.86 +0.9
681,294 + +1.7
681,295 - +0.8
681,295 - +0.2
681,428 + PFLU_RS02955 0.28 -0.0
681,428 + PFLU_RS02955 0.28 +0.4
681,429 - PFLU_RS02955 0.28 -0.3
681,429 - PFLU_RS02955 0.28 -0.7
681,728 + +0.0
681,750 + -1.6
681,750 + +0.7
681,750 + -1.8
681,750 + +1.8
681,751 - -1.0
681,751 - -1.4
681,754 + +0.6
681,755 - -0.4
681,755 - -1.6
681,776 + -0.6
681,776 + -0.0
681,776 + -0.4
681,776 + +0.3
681,777 - -0.6

Or see this region's nucleotide sequence