Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01050 and PFLU_RS01055 are separated by 224 nucleotides PFLU_RS01055 and PFLU_RS01060 are separated by 51 nucleotides PFLU_RS01060 and PFLU_RS01065 are separated by 1 nucleotides
PFLU_RS01050: PFLU_RS01050 - LysR family transcriptional regulator, at 235,777 to 236,643
_RS01050
PFLU_RS01055: PFLU_RS01055 - energy transducer TonB, at 236,868 to 237,683
_RS01055
PFLU_RS01060: PFLU_RS01060 - MotA/TolQ/ExbB proton channel family protein, at 237,735 to 238,457
_RS01060
PFLU_RS01065: PFLU_RS01065 - biopolymer transporter ExbD, at 238,459 to 238,860
_RS01065
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 236.049 kb on - strand, within PFLU_RS01050 at 236.049 kb on - strand, within PFLU_RS01050 at 236.398 kb on + strand, within PFLU_RS01050 at 236.398 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.548 kb on + strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.549 kb on - strand, within PFLU_RS01050 at 236.637 kb on + strand at 236.637 kb on + strand at 236.637 kb on + strand at 236.637 kb on + strand at 236.637 kb on + strand at 236.637 kb on + strand at 236.638 kb on - strand at 236.638 kb on - strand at 236.645 kb on + strand at 236.645 kb on + strand at 236.646 kb on - strand at 236.652 kb on + strand at 236.748 kb on + strand at 236.753 kb on - strand at 237.429 kb on + strand, within PFLU_RS01055 at 237.454 kb on - strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.681 kb on + strand at 237.681 kb on + strand at 237.681 kb on + strand at 237.681 kb on + strand at 237.682 kb on - strand at 237.682 kb on - strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.718 kb on + strand at 237.718 kb on + strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.745 kb on + strand at 237.746 kb on - strand at 237.746 kb on - strand at 237.746 kb on - strand at 237.746 kb on - strand at 238.293 kb on + strand, within PFLU_RS01060 at 238.293 kb on + strand, within PFLU_RS01060 at 238.293 kb on + strand, within PFLU_RS01060 at 238.294 kb on - strand, within PFLU_RS01060 at 238.294 kb on - strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.535 kb on + strand, within PFLU_RS01065 at 238.535 kb on + strand, within PFLU_RS01065 at 238.536 kb on - strand, within PFLU_RS01065 at 238.536 kb on - strand, within PFLU_RS01065 at 238.551 kb on + strand, within PFLU_RS01065 at 238.551 kb on + strand, within PFLU_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 236,049 - PFLU_RS01050 0.31 +0.0 236,049 - PFLU_RS01050 0.31 -0.8 236,398 + PFLU_RS01050 0.72 +0.4 236,398 + PFLU_RS01050 0.72 +0.3 236,548 + PFLU_RS01050 0.89 +0.4 236,548 + PFLU_RS01050 0.89 -0.1 236,548 + PFLU_RS01050 0.89 -0.5 236,548 + PFLU_RS01050 0.89 -1.0 236,548 + PFLU_RS01050 0.89 -0.7 236,548 + PFLU_RS01050 0.89 +0.7 236,548 + PFLU_RS01050 0.89 +1.3 236,548 + PFLU_RS01050 0.89 -0.8 236,548 + PFLU_RS01050 0.89 +2.1 236,548 + PFLU_RS01050 0.89 +0.9 236,548 + PFLU_RS01050 0.89 -0.6 236,548 + PFLU_RS01050 0.89 +1.4 236,548 + PFLU_RS01050 0.89 +0.6 236,548 + PFLU_RS01050 0.89 +1.5 236,548 + PFLU_RS01050 0.89 -0.9 236,548 + PFLU_RS01050 0.89 +0.4 236,548 + PFLU_RS01050 0.89 -0.2 236,549 - PFLU_RS01050 0.89 -1.2 236,549 - PFLU_RS01050 0.89 +0.6 236,549 - PFLU_RS01050 0.89 -0.8 236,549 - PFLU_RS01050 0.89 +1.0 236,549 - PFLU_RS01050 0.89 -0.1 236,549 - PFLU_RS01050 0.89 +0.3 236,549 - PFLU_RS01050 0.89 -0.5 236,549 - PFLU_RS01050 0.89 -0.6 236,549 - PFLU_RS01050 0.89 -0.6 236,549 - PFLU_RS01050 0.89 +1.7 236,549 - PFLU_RS01050 0.89 +0.9 236,637 + +1.6 236,637 + -1.8 236,637 + +0.0 236,637 + -1.6 236,637 + +0.3 236,637 + +1.1 236,638 - -1.4 236,638 - -0.6 236,645 + +0.9 236,645 + +0.3 236,646 - +0.7 236,652 + -1.8 236,748 + -1.8 236,753 - +3.2 237,429 + PFLU_RS01055 0.69 +0.7 237,454 - PFLU_RS01055 0.72 +0.8 237,511 + PFLU_RS01055 0.79 -1.3 237,511 + PFLU_RS01055 0.79 -0.1 237,511 + PFLU_RS01055 0.79 +0.4 237,511 + PFLU_RS01055 0.79 -2.1 237,511 + PFLU_RS01055 0.79 -0.3 237,511 + PFLU_RS01055 0.79 -0.0 237,511 + PFLU_RS01055 0.79 -0.1 237,511 + PFLU_RS01055 0.79 +0.3 237,511 + PFLU_RS01055 0.79 +0.4 237,511 + PFLU_RS01055 0.79 -0.0 237,511 + PFLU_RS01055 0.79 -0.2 237,511 + PFLU_RS01055 0.79 -1.6 237,511 + PFLU_RS01055 0.79 +1.3 237,511 + PFLU_RS01055 0.79 -0.8 237,512 - PFLU_RS01055 0.79 -0.8 237,512 - PFLU_RS01055 0.79 -0.5 237,512 - PFLU_RS01055 0.79 -0.2 237,512 - PFLU_RS01055 0.79 -0.3 237,512 - PFLU_RS01055 0.79 -2.4 237,512 - PFLU_RS01055 0.79 +0.5 237,512 - PFLU_RS01055 0.79 +0.6 237,512 - PFLU_RS01055 0.79 -0.2 237,512 - PFLU_RS01055 0.79 +0.2 237,512 - PFLU_RS01055 0.79 -1.0 237,681 + -0.2 237,681 + +0.5 237,681 + +0.9 237,681 + -1.4 237,682 - -0.4 237,682 - -0.0 237,685 + -1.2 237,685 + +0.5 237,685 + +1.1 237,685 + +0.1 237,685 + +1.5 237,685 + -0.2 237,685 + -1.2 237,685 + +0.4 237,685 + +0.2 237,685 + +0.2 237,685 + -1.7 237,685 + +0.2 237,685 + -1.0 237,685 + -0.3 237,685 + -0.7 237,685 + +0.1 237,685 + +1.0 237,686 - -0.6 237,686 - -0.9 237,686 - +0.6 237,686 - +1.7 237,686 - +0.5 237,686 - +0.5 237,686 - -1.0 237,686 - +0.3 237,686 - -2.3 237,686 - +0.6 237,686 - -0.0 237,686 - +0.8 237,686 - +0.4 237,686 - +0.7 237,718 + -0.3 237,718 + -0.1 237,719 - +0.3 237,719 - +0.2 237,719 - -0.5 237,719 - +1.2 237,719 - +0.4 237,721 + +0.8 237,721 + +1.0 237,721 + +0.7 237,721 + +0.2 237,721 + +0.1 237,721 + -1.2 237,721 + +0.5 237,721 + -0.0 237,721 + +0.6 237,721 + +2.0 237,721 + +0.8 237,722 - +0.6 237,722 - +0.3 237,722 - -0.2 237,722 - +1.2 237,722 - -1.3 237,722 - -2.2 237,745 + -0.3 237,746 - -1.3 237,746 - +0.6 237,746 - -0.3 237,746 - +0.6 238,293 + PFLU_RS01060 0.77 -1.0 238,293 + PFLU_RS01060 0.77 +0.2 238,293 + PFLU_RS01060 0.77 +0.8 238,294 - PFLU_RS01060 0.77 -0.9 238,294 - PFLU_RS01060 0.77 +1.3 238,299 + PFLU_RS01060 0.78 +1.1 238,299 + PFLU_RS01060 0.78 -0.4 238,299 + PFLU_RS01060 0.78 +1.7 238,299 + PFLU_RS01060 0.78 -1.5 238,299 + PFLU_RS01060 0.78 -0.8 238,299 + PFLU_RS01060 0.78 -0.8 238,299 + PFLU_RS01060 0.78 -0.7 238,299 + PFLU_RS01060 0.78 +1.6 238,299 + PFLU_RS01060 0.78 +0.2 238,299 + PFLU_RS01060 0.78 +0.8 238,299 + PFLU_RS01060 0.78 +0.2 238,300 - PFLU_RS01060 0.78 -0.6 238,300 - PFLU_RS01060 0.78 +0.9 238,300 - PFLU_RS01060 0.78 +0.0 238,300 - PFLU_RS01060 0.78 -0.1 238,300 - PFLU_RS01060 0.78 +0.0 238,300 - PFLU_RS01060 0.78 +0.4 238,359 + PFLU_RS01060 0.86 +1.3 238,359 + PFLU_RS01060 0.86 -1.5 238,359 + PFLU_RS01060 0.86 +0.5 238,359 + PFLU_RS01060 0.86 -1.2 238,359 + PFLU_RS01060 0.86 +0.5 238,359 + PFLU_RS01060 0.86 +0.1 238,360 - PFLU_RS01060 0.86 -0.7 238,360 - PFLU_RS01060 0.86 +0.7 238,360 - PFLU_RS01060 0.86 +1.2 238,360 - PFLU_RS01060 0.86 +2.6 238,360 - PFLU_RS01060 0.86 -0.8 238,360 - PFLU_RS01060 0.86 +0.6 238,535 + PFLU_RS01065 0.19 -0.4 238,535 + PFLU_RS01065 0.19 +1.0 238,536 - PFLU_RS01065 0.19 +0.0 238,536 - PFLU_RS01065 0.19 +0.4 238,551 + PFLU_RS01065 0.23 +1.2 238,551 + PFLU_RS01065 0.23 +1.0
Or see this region's nucleotide sequence