Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00590 and PFLU_RS00595 are separated by 140 nucleotides PFLU_RS00595 and PFLU_RS00600 are separated by 109 nucleotides PFLU_RS00600 and PFLU_RS00605 are separated by 465 nucleotides
PFLU_RS00590: PFLU_RS00590 - 23S ribosomal RNA, at 121,763 to 124,678
_RS00590
PFLU_RS00595: PFLU_RS00595 - 5S ribosomal RNA, at 124,819 to 124,934
_RS00595
PFLU_RS00600: PFLU_RS00600 - 5S ribosomal RNA, at 125,044 to 125,159
_RS00600
PFLU_RS00605: PFLU_RS00605 - methyl-accepting chemotaxis protein, at 125,625 to 127,505
_RS00605
Position (kb) 125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 124.919 kb on + strand, within PFLU_RS00595 at 124.919 kb on + strand, within PFLU_RS00595 at 124.981 kb on + strand at 124.981 kb on + strand at 124.981 kb on + strand at 124.982 kb on - strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.985 kb on + strand at 124.986 kb on - strand at 124.986 kb on - strand at 124.986 kb on - strand at 124.986 kb on - strand at 125.056 kb on - strand, within PFLU_RS00600 at 125.056 kb on - strand, within PFLU_RS00600 at 125.056 kb on - strand, within PFLU_RS00600 at 125.056 kb on - strand, within PFLU_RS00600 at 125.056 kb on - strand, within PFLU_RS00600 at 125.056 kb on - strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.144 kb on + strand, within PFLU_RS00600 at 125.210 kb on - strand at 125.210 kb on - strand at 125.210 kb on - strand at 125.228 kb on + strand at 125.228 kb on + strand at 125.228 kb on + strand at 125.228 kb on + strand at 125.229 kb on - strand at 125.229 kb on - strand at 125.229 kb on - strand at 125.229 kb on - strand at 125.229 kb on - strand at 125.254 kb on + strand at 125.254 kb on + strand at 125.255 kb on - strand at 125.255 kb on - strand at 125.307 kb on + strand at 125.308 kb on - strand at 125.376 kb on + strand at 125.376 kb on + strand at 125.376 kb on + strand at 125.376 kb on + strand at 125.376 kb on + strand at 125.377 kb on - strand at 125.377 kb on - strand at 125.377 kb on - strand at 125.433 kb on + strand at 125.466 kb on + strand at 125.467 kb on - strand at 125.467 kb on - strand at 125.467 kb on - strand at 125.467 kb on - strand at 125.467 kb on - strand at 125.467 kb on - strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.484 kb on - strand at 125.536 kb on + strand at 125.536 kb on + strand at 125.536 kb on + strand at 125.536 kb on + strand at 125.558 kb on + strand at 125.558 kb on + strand at 125.559 kb on - strand at 125.559 kb on - strand at 125.559 kb on - strand at 125.566 kb on + strand at 125.566 kb on + strand at 125.567 kb on - strand at 125.567 kb on - strand at 125.567 kb on - strand at 125.567 kb on - strand at 125.567 kb on - strand at 125.567 kb on - strand at 125.633 kb on + strand at 125.634 kb on - strand at 125.634 kb on - strand at 125.680 kb on + strand at 125.680 kb on + strand at 125.681 kb on - strand at 125.681 kb on - strand at 125.703 kb on + strand at 125.703 kb on + strand at 125.704 kb on - strand at 125.704 kb on - strand at 125.713 kb on - strand at 125.783 kb on + strand at 125.783 kb on + strand at 125.784 kb on - strand at 125.784 kb on - strand at 125.784 kb on - strand at 125.784 kb on - strand at 125.818 kb on + strand, within PFLU_RS00605 at 125.840 kb on + strand, within PFLU_RS00605 at 125.841 kb on - strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.919 kb on + strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 125.920 kb on - strand, within PFLU_RS00605 at 126.003 kb on + strand, within PFLU_RS00605 at 126.003 kb on + strand, within PFLU_RS00605 at 126.003 kb on + strand, within PFLU_RS00605 at 126.003 kb on + strand, within PFLU_RS00605 at 126.003 kb on + strand, within PFLU_RS00605 at 126.004 kb on - strand, within PFLU_RS00605 at 126.004 kb on - strand, within PFLU_RS00605 at 126.004 kb on - strand, within PFLU_RS00605 at 126.016 kb on + strand, within PFLU_RS00605 at 126.026 kb on + strand, within PFLU_RS00605 at 126.026 kb on + strand, within PFLU_RS00605 at 126.026 kb on + strand, within PFLU_RS00605 at 126.027 kb on - strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.048 kb on + strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605 at 126.049 kb on - strand, within PFLU_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 124,919 + PFLU_RS00595 0.86 +2.4 124,919 + PFLU_RS00595 0.86 +2.4 124,981 + -0.2 124,981 + +0.2 124,981 + -1.0 124,982 - +0.8 124,985 + -0.1 124,985 + +0.0 124,985 + -0.5 124,985 + -1.5 124,985 + -0.8 124,985 + -0.8 124,985 + -0.2 124,985 + -2.7 124,986 - +0.3 124,986 - +0.3 124,986 - -0.9 124,986 - -0.8 125,056 - PFLU_RS00600 0.10 -1.5 125,056 - PFLU_RS00600 0.10 +0.4 125,056 - PFLU_RS00600 0.10 -0.3 125,056 - PFLU_RS00600 0.10 +1.2 125,056 - PFLU_RS00600 0.10 +0.3 125,056 - PFLU_RS00600 0.10 -0.2 125,144 + PFLU_RS00600 0.86 -0.5 125,144 + PFLU_RS00600 0.86 +0.8 125,144 + PFLU_RS00600 0.86 +0.3 125,144 + PFLU_RS00600 0.86 -0.2 125,144 + PFLU_RS00600 0.86 -0.7 125,144 + PFLU_RS00600 0.86 +0.5 125,144 + PFLU_RS00600 0.86 -0.1 125,210 - +0.8 125,210 - +0.3 125,210 - -2.5 125,228 + -0.6 125,228 + -0.4 125,228 + -0.4 125,228 + +0.8 125,229 - -0.4 125,229 - -1.1 125,229 - -1.1 125,229 - +0.1 125,229 - -1.1 125,254 + +0.5 125,254 + -0.3 125,255 - +0.1 125,255 - +0.1 125,307 + -0.4 125,308 - -0.7 125,376 + +0.7 125,376 + +0.0 125,376 + -1.0 125,376 + -0.0 125,376 + +0.4 125,377 - +0.0 125,377 - -1.7 125,377 - +1.4 125,433 + -1.2 125,466 + +0.7 125,467 - -0.8 125,467 - +0.4 125,467 - +1.3 125,467 - -0.2 125,467 - +0.1 125,467 - +2.0 125,468 + +0.8 125,468 + +0.7 125,468 + -0.3 125,468 + +0.3 125,468 + -0.3 125,468 + -0.4 125,468 + -0.3 125,468 + -2.4 125,468 + -0.9 125,468 + +0.3 125,468 + +0.5 125,468 + -0.6 125,468 + -1.4 125,468 + +0.4 125,468 + -0.4 125,468 + -0.3 125,468 + +1.0 125,468 + -0.1 125,469 - -0.5 125,469 - +0.4 125,469 - +2.8 125,469 - +0.0 125,469 - +1.4 125,469 - +0.1 125,469 - +0.7 125,469 - +0.8 125,469 - -1.8 125,469 - -0.6 125,469 - -0.2 125,469 - +0.3 125,469 - +0.1 125,469 - +0.1 125,469 - +0.3 125,469 - +0.5 125,469 - +0.6 125,469 - -0.2 125,484 - -0.1 125,536 + +0.7 125,536 + -0.3 125,536 + -0.5 125,536 + -0.9 125,558 + +0.3 125,558 + -1.0 125,559 - +0.0 125,559 - -0.9 125,559 - +0.0 125,566 + -1.0 125,566 + +0.4 125,567 - -0.2 125,567 - +0.8 125,567 - +1.0 125,567 - -0.1 125,567 - +0.4 125,567 - +1.2 125,633 + -0.8 125,634 - -0.1 125,634 - +0.7 125,680 + +1.0 125,680 + +0.6 125,681 - -1.1 125,681 - -0.2 125,703 + +0.1 125,703 + +0.3 125,704 - +0.8 125,704 - -0.6 125,713 - +0.3 125,783 + -1.5 125,783 + -0.4 125,784 - +0.4 125,784 - +1.0 125,784 - +1.5 125,784 - -0.4 125,818 + PFLU_RS00605 0.10 -0.3 125,840 + PFLU_RS00605 0.11 +0.1 125,841 - PFLU_RS00605 0.11 -1.0 125,919 + PFLU_RS00605 0.16 +1.0 125,919 + PFLU_RS00605 0.16 -0.3 125,919 + PFLU_RS00605 0.16 +0.2 125,919 + PFLU_RS00605 0.16 -1.1 125,919 + PFLU_RS00605 0.16 -0.2 125,919 + PFLU_RS00605 0.16 +0.8 125,920 - PFLU_RS00605 0.16 -0.6 125,920 - PFLU_RS00605 0.16 -0.8 125,920 - PFLU_RS00605 0.16 -0.0 125,920 - PFLU_RS00605 0.16 +0.3 125,920 - PFLU_RS00605 0.16 +0.2 125,920 - PFLU_RS00605 0.16 +0.6 125,920 - PFLU_RS00605 0.16 -0.5 125,920 - PFLU_RS00605 0.16 -0.1 125,920 - PFLU_RS00605 0.16 +0.9 125,920 - PFLU_RS00605 0.16 -0.0 125,920 - PFLU_RS00605 0.16 -0.8 125,920 - PFLU_RS00605 0.16 +0.3 125,920 - PFLU_RS00605 0.16 +1.1 126,003 + PFLU_RS00605 0.20 +0.3 126,003 + PFLU_RS00605 0.20 -1.8 126,003 + PFLU_RS00605 0.20 +0.1 126,003 + PFLU_RS00605 0.20 +0.4 126,003 + PFLU_RS00605 0.20 -1.3 126,004 - PFLU_RS00605 0.20 +0.9 126,004 - PFLU_RS00605 0.20 +1.0 126,004 - PFLU_RS00605 0.20 +1.5 126,016 + PFLU_RS00605 0.21 -0.7 126,026 + PFLU_RS00605 0.21 -0.1 126,026 + PFLU_RS00605 0.21 +1.0 126,026 + PFLU_RS00605 0.21 -0.8 126,027 - PFLU_RS00605 0.21 +0.6 126,048 + PFLU_RS00605 0.22 +0.1 126,048 + PFLU_RS00605 0.22 +0.2 126,048 + PFLU_RS00605 0.22 -1.0 126,048 + PFLU_RS00605 0.22 +0.8 126,048 + PFLU_RS00605 0.22 -1.2 126,048 + PFLU_RS00605 0.22 +0.5 126,048 + PFLU_RS00605 0.22 +0.2 126,048 + PFLU_RS00605 0.22 +0.4 126,048 + PFLU_RS00605 0.22 +0.4 126,048 + PFLU_RS00605 0.22 -1.8 126,048 + PFLU_RS00605 0.22 +0.1 126,049 - PFLU_RS00605 0.23 -0.0 126,049 - PFLU_RS00605 0.23 -0.8 126,049 - PFLU_RS00605 0.23 -0.4 126,049 - PFLU_RS00605 0.23 -0.2 126,049 - PFLU_RS00605 0.23 +1.4 126,049 - PFLU_RS00605 0.23 -1.0 126,049 - PFLU_RS00605 0.23 +1.4 126,049 - PFLU_RS00605 0.23 -0.2 126,049 - PFLU_RS00605 0.23 -2.1
Or see this region's nucleotide sequence