Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_12765 and OH686_12770 are separated by 25 nucleotides OH686_12770 and OH686_12775 overlap by 4 nucleotides OH686_12775 and OH686_12780 overlap by 1 nucleotides
OH686_12765: OH686_12765 - VgrG protein, at 2,682,446 to 2,684,572
_12765
OH686_12770: OH686_12770 - T6SS Serine/threonine protein kinase PpkA, at 2,684,598 to 2,685,557
_12770
OH686_12775: OH686_12775 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 2,685,554 to 2,686,285
_12775
OH686_12780: OH686_12780 - T6SS component TssM (IcmF/VasK), at 2,686,285 to 2,689,806
_12780
Position (kb)
2685
2686
2687 Strain fitness (log2 ratio)
-2
-1
0
1 at 2684.639 kb on + strand at 2684.640 kb on - strand at 2684.789 kb on + strand, within OH686_12770 at 2684.789 kb on + strand, within OH686_12770 at 2684.789 kb on + strand, within OH686_12770 at 2684.789 kb on + strand, within OH686_12770 at 2684.790 kb on - strand, within OH686_12770 at 2684.833 kb on + strand, within OH686_12770 at 2684.833 kb on + strand, within OH686_12770 at 2684.833 kb on + strand, within OH686_12770 at 2684.834 kb on - strand, within OH686_12770 at 2684.834 kb on - strand, within OH686_12770 at 2684.854 kb on + strand, within OH686_12770 at 2684.855 kb on - strand, within OH686_12770 at 2684.855 kb on - strand, within OH686_12770 at 2684.855 kb on - strand, within OH686_12770 at 2684.855 kb on - strand, within OH686_12770 at 2684.855 kb on - strand, within OH686_12770 at 2684.909 kb on - strand, within OH686_12770 at 2685.142 kb on + strand, within OH686_12770 at 2685.142 kb on + strand, within OH686_12770 at 2685.232 kb on + strand, within OH686_12770 at 2685.232 kb on + strand, within OH686_12770 at 2685.232 kb on + strand, within OH686_12770 at 2685.232 kb on + strand, within OH686_12770 at 2685.232 kb on + strand, within OH686_12770 at 2685.233 kb on - strand, within OH686_12770 at 2685.233 kb on - strand, within OH686_12770 at 2685.233 kb on - strand, within OH686_12770 at 2685.233 kb on - strand, within OH686_12770 at 2685.286 kb on + strand, within OH686_12770 at 2685.286 kb on + strand, within OH686_12770 at 2685.286 kb on + strand, within OH686_12770 at 2685.286 kb on + strand, within OH686_12770 at 2685.287 kb on - strand, within OH686_12770 at 2685.287 kb on - strand, within OH686_12770 at 2685.287 kb on - strand, within OH686_12770 at 2685.287 kb on - strand, within OH686_12770 at 2685.397 kb on + strand, within OH686_12770 at 2685.690 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.909 kb on + strand, within OH686_12775 at 2685.910 kb on - strand, within OH686_12775 at 2685.910 kb on - strand, within OH686_12775 at 2685.910 kb on - strand, within OH686_12775 at 2686.315 kb on + strand at 2686.316 kb on - strand at 2686.316 kb on - strand at 2686.316 kb on - strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.364 kb on + strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.365 kb on - strand at 2686.589 kb on + strand at 2686.590 kb on - strand at 2686.637 kb on + strand at 2686.637 kb on + strand at 2686.637 kb on + strand at 2686.637 kb on + strand at 2686.637 kb on + strand at 2686.638 kb on - strand, within OH686_12780 at 2686.638 kb on - strand, within OH686_12780 at 2686.638 kb on - strand, within OH686_12780 at 2686.638 kb on - strand, within OH686_12780 at 2686.826 kb on + strand, within OH686_12780 at 2686.827 kb on - strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.946 kb on + strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.947 kb on - strand, within OH686_12780 at 2686.955 kb on + strand, within OH686_12780 at 2686.955 kb on + strand, within OH686_12780 at 2686.955 kb on + strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.956 kb on - strand, within OH686_12780 at 2686.985 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on + strand, within OH686_12780 at 2686.991 kb on - strand, within OH686_12780 at 2686.992 kb on - strand, within OH686_12780 at 2686.992 kb on - strand, within OH686_12780 at 2686.992 kb on - strand, within OH686_12780
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,684,639 + +1.1 2,684,640 - -0.5 2,684,789 + OH686_12770 0.20 +0.7 2,684,789 + OH686_12770 0.20 -0.1 2,684,789 + OH686_12770 0.20 +1.0 2,684,789 + OH686_12770 0.20 -2.7 2,684,790 - OH686_12770 0.20 -0.5 2,684,833 + OH686_12770 0.24 +1.0 2,684,833 + OH686_12770 0.24 +0.4 2,684,833 + OH686_12770 0.24 +0.2 2,684,834 - OH686_12770 0.25 -0.9 2,684,834 - OH686_12770 0.25 -0.2 2,684,854 + OH686_12770 0.27 +0.6 2,684,855 - OH686_12770 0.27 +0.1 2,684,855 - OH686_12770 0.27 -0.7 2,684,855 - OH686_12770 0.27 -0.1 2,684,855 - OH686_12770 0.27 +1.2 2,684,855 - OH686_12770 0.27 -1.6 2,684,909 - OH686_12770 0.32 -1.1 2,685,142 + OH686_12770 0.57 -0.8 2,685,142 + OH686_12770 0.57 -0.2 2,685,232 + OH686_12770 0.66 +0.1 2,685,232 + OH686_12770 0.66 +0.2 2,685,232 + OH686_12770 0.66 -0.3 2,685,232 + OH686_12770 0.66 -0.1 2,685,232 + OH686_12770 0.66 +0.8 2,685,233 - OH686_12770 0.66 +0.0 2,685,233 - OH686_12770 0.66 +0.3 2,685,233 - OH686_12770 0.66 -0.1 2,685,233 - OH686_12770 0.66 -0.1 2,685,286 + OH686_12770 0.72 -0.2 2,685,286 + OH686_12770 0.72 +0.9 2,685,286 + OH686_12770 0.72 +0.7 2,685,286 + OH686_12770 0.72 +1.0 2,685,287 - OH686_12770 0.72 -0.3 2,685,287 - OH686_12770 0.72 +0.5 2,685,287 - OH686_12770 0.72 -0.4 2,685,287 - OH686_12770 0.72 +0.0 2,685,397 + OH686_12770 0.83 -0.3 2,685,690 + OH686_12775 0.19 -0.4 2,685,909 + OH686_12775 0.48 -0.0 2,685,909 + OH686_12775 0.48 -0.4 2,685,909 + OH686_12775 0.48 +0.8 2,685,909 + OH686_12775 0.48 +1.2 2,685,909 + OH686_12775 0.48 -0.0 2,685,909 + OH686_12775 0.48 +0.7 2,685,910 - OH686_12775 0.49 -0.8 2,685,910 - OH686_12775 0.49 +0.6 2,685,910 - OH686_12775 0.49 -0.2 2,686,315 + -1.3 2,686,316 - -1.0 2,686,316 - +0.2 2,686,316 - +0.8 2,686,364 + -0.1 2,686,364 + +0.5 2,686,364 + -0.0 2,686,364 + -0.2 2,686,364 + -0.4 2,686,364 + +0.3 2,686,364 + +0.6 2,686,364 + -1.6 2,686,364 + +0.3 2,686,365 - +0.4 2,686,365 - -0.7 2,686,365 - +0.3 2,686,365 - +1.2 2,686,365 - -0.0 2,686,365 - -0.7 2,686,365 - -0.3 2,686,589 + -0.3 2,686,590 - +0.5 2,686,637 + -0.4 2,686,637 + -0.8 2,686,637 + +0.6 2,686,637 + -0.3 2,686,637 + -0.6 2,686,638 - OH686_12780 0.10 -0.1 2,686,638 - OH686_12780 0.10 +0.8 2,686,638 - OH686_12780 0.10 -0.2 2,686,638 - OH686_12780 0.10 -0.3 2,686,826 + OH686_12780 0.15 -0.4 2,686,827 - OH686_12780 0.15 +1.0 2,686,946 + OH686_12780 0.19 -0.4 2,686,946 + OH686_12780 0.19 -0.8 2,686,946 + OH686_12780 0.19 -0.2 2,686,946 + OH686_12780 0.19 -0.0 2,686,946 + OH686_12780 0.19 +0.1 2,686,946 + OH686_12780 0.19 -0.1 2,686,946 + OH686_12780 0.19 -0.3 2,686,946 + OH686_12780 0.19 +0.0 2,686,946 + OH686_12780 0.19 -0.7 2,686,946 + OH686_12780 0.19 -0.1 2,686,946 + OH686_12780 0.19 +0.7 2,686,946 + OH686_12780 0.19 -1.8 2,686,946 + OH686_12780 0.19 -1.9 2,686,946 + OH686_12780 0.19 +1.3 2,686,947 - OH686_12780 0.19 -0.5 2,686,947 - OH686_12780 0.19 +0.2 2,686,947 - OH686_12780 0.19 -0.1 2,686,947 - OH686_12780 0.19 -2.2 2,686,947 - OH686_12780 0.19 +0.3 2,686,947 - OH686_12780 0.19 -0.1 2,686,947 - OH686_12780 0.19 -0.3 2,686,947 - OH686_12780 0.19 +0.9 2,686,947 - OH686_12780 0.19 -0.0 2,686,947 - OH686_12780 0.19 +0.4 2,686,947 - OH686_12780 0.19 -0.2 2,686,947 - OH686_12780 0.19 -0.3 2,686,955 + OH686_12780 0.19 +0.3 2,686,955 + OH686_12780 0.19 -0.4 2,686,955 + OH686_12780 0.19 -0.8 2,686,956 - OH686_12780 0.19 -0.3 2,686,956 - OH686_12780 0.19 -0.2 2,686,956 - OH686_12780 0.19 +0.0 2,686,956 - OH686_12780 0.19 -0.7 2,686,956 - OH686_12780 0.19 +0.9 2,686,956 - OH686_12780 0.19 -0.5 2,686,985 + OH686_12780 0.20 +0.1 2,686,991 + OH686_12780 0.20 -0.0 2,686,991 + OH686_12780 0.20 +0.6 2,686,991 + OH686_12780 0.20 -0.7 2,686,991 + OH686_12780 0.20 +1.0 2,686,991 + OH686_12780 0.20 -0.1 2,686,991 + OH686_12780 0.20 -0.1 2,686,991 + OH686_12780 0.20 -0.2 2,686,991 - OH686_12780 0.20 -0.4 2,686,992 - OH686_12780 0.20 -0.7 2,686,992 - OH686_12780 0.20 -1.8 2,686,992 - OH686_12780 0.20 -1.2
Or see this region's nucleotide sequence