Strain Fitness in Pseudomonas sp. S08-1 around OH686_00130

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00125 and OH686_00130 overlap by 4 nucleotidesOH686_00130 and OH686_00135 are separated by 86 nucleotides OH686_00125: OH686_00125 - NADH-ubiquinone oxidoreductase chain H , at 24,405 to 25,397 _00125 OH686_00130: OH686_00130 - NADH dehydrogenase (quinone), G subunit, at 25,394 to 28,102 _00130 OH686_00135: OH686_00135 - NADH oxidoreductase (quinone), F subunit, at 28,189 to 29,547 _00135 Position (kb) 25 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 24.406 kb on + strandat 24.407 kb on - strandat 24.660 kb on + strand, within OH686_00125at 24.660 kb on + strand, within OH686_00125at 24.660 kb on + strand, within OH686_00125at 24.661 kb on - strand, within OH686_00125at 24.671 kb on - strand, within OH686_00125at 24.671 kb on - strand, within OH686_00125at 24.709 kb on + strand, within OH686_00125at 24.710 kb on - strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.804 kb on - strand, within OH686_00125at 24.853 kb on + strand, within OH686_00125at 24.931 kb on + strand, within OH686_00125at 24.932 kb on - strand, within OH686_00125at 25.016 kb on - strand, within OH686_00125at 25.606 kb on - strandat 25.606 kb on - strandat 25.606 kb on - strandat 25.896 kb on + strand, within OH686_00130at 25.982 kb on - strand, within OH686_00130at 25.993 kb on - strand, within OH686_00130at 26.073 kb on - strand, within OH686_00130at 26.073 kb on - strand, within OH686_00130at 26.202 kb on + strand, within OH686_00130at 26.202 kb on + strand, within OH686_00130at 26.202 kb on + strand, within OH686_00130at 26.203 kb on - strand, within OH686_00130at 26.205 kb on + strand, within OH686_00130at 26.205 kb on + strand, within OH686_00130at 26.404 kb on - strand, within OH686_00130at 26.573 kb on - strand, within OH686_00130at 26.777 kb on + strand, within OH686_00130at 26.777 kb on + strand, within OH686_00130at 26.778 kb on - strand, within OH686_00130at 26.778 kb on - strand, within OH686_00130at 26.984 kb on + strand, within OH686_00130at 26.984 kb on + strand, within OH686_00130at 26.985 kb on - strand, within OH686_00130at 26.985 kb on - strand, within OH686_00130at 27.105 kb on + strand, within OH686_00130at 27.105 kb on + strand, within OH686_00130at 27.106 kb on - strand, within OH686_00130at 27.141 kb on + strand, within OH686_00130at 27.141 kb on + strand, within OH686_00130at 27.141 kb on + strand, within OH686_00130at 27.141 kb on + strand, within OH686_00130at 27.142 kb on - strand, within OH686_00130at 27.142 kb on - strand, within OH686_00130at 27.288 kb on + strand, within OH686_00130at 27.324 kb on + strand, within OH686_00130at 27.325 kb on - strand, within OH686_00130at 27.459 kb on + strand, within OH686_00130at 27.460 kb on - strand, within OH686_00130at 27.565 kb on - strand, within OH686_00130at 27.565 kb on - strand, within OH686_00130at 27.565 kb on - strand, within OH686_00130at 27.621 kb on + strand, within OH686_00130at 27.621 kb on + strand, within OH686_00130at 27.621 kb on + strand, within OH686_00130at 27.622 kb on - strand, within OH686_00130at 27.622 kb on - strand, within OH686_00130at 27.622 kb on - strand, within OH686_00130at 27.622 kb on - strand, within OH686_00130at 27.622 kb on - strand, within OH686_00130at 27.624 kb on + strand, within OH686_00130at 27.945 kb on + strandat 27.946 kb on - strandat 27.946 kb on - strandat 28.008 kb on + strandat 28.009 kb on - strandat 28.009 kb on - strandat 28.085 kb on + strandat 28.086 kb on - strandat 28.240 kb on + strandat 28.268 kb on + strandat 28.268 kb on + strandat 28.269 kb on - strandat 28.389 kb on + strand, within OH686_00135at 28.389 kb on + strand, within OH686_00135at 28.389 kb on + strand, within OH686_00135at 28.389 kb on + strand, within OH686_00135at 28.389 kb on + strand, within OH686_00135at 28.655 kb on + strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.656 kb on - strand, within OH686_00135at 28.679 kb on + strand, within OH686_00135at 28.680 kb on - strand, within OH686_00135at 28.808 kb on + strand, within OH686_00135at 28.808 kb on + strand, within OH686_00135at 28.809 kb on - strand, within OH686_00135at 28.849 kb on + strand, within OH686_00135at 28.849 kb on + strand, within OH686_00135at 28.850 kb on - strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.980 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.982 kb on + strand, within OH686_00135at 28.983 kb on - strand, within OH686_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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24,406 + -0.1
24,407 - -0.5
24,660 + OH686_00125 0.26 +0.0
24,660 + OH686_00125 0.26 +0.0
24,660 + OH686_00125 0.26 -0.3
24,661 - OH686_00125 0.26 +0.0
24,671 - OH686_00125 0.27 -1.9
24,671 - OH686_00125 0.27 +0.0
24,709 + OH686_00125 0.31 +0.0
24,710 - OH686_00125 0.31 -1.1
24,803 + OH686_00125 0.40 -0.3
24,803 + OH686_00125 0.40 -1.1
24,803 + OH686_00125 0.40 +0.0
24,803 + OH686_00125 0.40 +0.0
24,804 - OH686_00125 0.40 +1.0
24,853 + OH686_00125 0.45 -0.8
24,931 + OH686_00125 0.53 -0.8
24,932 - OH686_00125 0.53 -0.3
25,016 - OH686_00125 0.62 +0.0
25,606 - +0.0
25,606 - -0.5
25,606 - -0.8
25,896 + OH686_00130 0.19 +1.0
25,982 - OH686_00130 0.22 -1.0
25,993 - OH686_00130 0.22 -0.5
26,073 - OH686_00130 0.25 -1.0
26,073 - OH686_00130 0.25 -0.5
26,202 + OH686_00130 0.30 -0.8
26,202 + OH686_00130 0.30 -0.8
26,202 + OH686_00130 0.30 -0.5
26,203 - OH686_00130 0.30 -0.3
26,205 + OH686_00130 0.30 +0.0
26,205 + OH686_00130 0.30 -0.8
26,404 - OH686_00130 0.37 -1.9
26,573 - OH686_00130 0.44 -1.9
26,777 + OH686_00130 0.51 +0.5
26,777 + OH686_00130 0.51 -0.7
26,778 - OH686_00130 0.51 -0.3
26,778 - OH686_00130 0.51 +0.0
26,984 + OH686_00130 0.59 -1.4
26,984 + OH686_00130 0.59 -1.0
26,985 - OH686_00130 0.59 -0.3
26,985 - OH686_00130 0.59 -1.1
27,105 + OH686_00130 0.63 -0.3
27,105 + OH686_00130 0.63 +0.0
27,106 - OH686_00130 0.63 -1.3
27,141 + OH686_00130 0.64 +0.5
27,141 + OH686_00130 0.64 -0.5
27,141 + OH686_00130 0.64 -0.5
27,141 + OH686_00130 0.64 -0.5
27,142 - OH686_00130 0.65 +0.0
27,142 - OH686_00130 0.65 -1.3
27,288 + OH686_00130 0.70 -1.1
27,324 + OH686_00130 0.71 -1.0
27,325 - OH686_00130 0.71 -0.5
27,459 + OH686_00130 0.76 +0.0
27,460 - OH686_00130 0.76 -0.8
27,565 - OH686_00130 0.80 -1.7
27,565 - OH686_00130 0.80 +1.0
27,565 - OH686_00130 0.80 +0.6
27,621 + OH686_00130 0.82 +0.0
27,621 + OH686_00130 0.82 -0.3
27,621 + OH686_00130 0.82 -0.8
27,622 - OH686_00130 0.82 -1.1
27,622 - OH686_00130 0.82 -0.3
27,622 - OH686_00130 0.82 -0.5
27,622 - OH686_00130 0.82 +0.0
27,622 - OH686_00130 0.82 -0.5
27,624 + OH686_00130 0.82 -1.3
27,945 + +0.2
27,946 - -0.3
27,946 - -2.0
28,008 + +0.0
28,009 - -1.4
28,009 - -1.8
28,085 + -0.3
28,086 - -0.3
28,240 + -1.0
28,268 + -0.3
28,268 + +0.0
28,269 - -0.5
28,389 + OH686_00135 0.15 +0.0
28,389 + OH686_00135 0.15 +0.0
28,389 + OH686_00135 0.15 -0.3
28,389 + OH686_00135 0.15 -0.5
28,389 + OH686_00135 0.15 -0.3
28,655 + OH686_00135 0.34 +1.0
28,656 - OH686_00135 0.34 -1.4
28,656 - OH686_00135 0.34 -1.5
28,656 - OH686_00135 0.34 -1.1
28,679 + OH686_00135 0.36 +0.2
28,680 - OH686_00135 0.36 -0.3
28,808 + OH686_00135 0.46 +0.5
28,808 + OH686_00135 0.46 -2.2
28,809 - OH686_00135 0.46 +1.0
28,849 + OH686_00135 0.49 -0.8
28,849 + OH686_00135 0.49 +0.7
28,850 - OH686_00135 0.49 +0.0
28,980 + OH686_00135 0.58 -1.3
28,980 + OH686_00135 0.58 -0.5
28,980 + OH686_00135 0.58 -0.8
28,982 + OH686_00135 0.58 -0.5
28,982 + OH686_00135 0.58 -1.0
28,982 + OH686_00135 0.58 -0.3
28,982 + OH686_00135 0.58 -0.5
28,983 - OH686_00135 0.58 +0.0

Or see this region's nucleotide sequence