Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07060 and PS417_07065 overlap by 8 nucleotides PS417_07065 and PS417_07070 are separated by 1 nucleotides PS417_07070 and PS417_07075 are separated by 164 nucleotides
PS417_07060: PS417_07060 - membrane protein, at 1,562,581 to 1,563,609
_07060
PS417_07065: PS417_07065 - tripartite tricarboxylate transporter TctA, at 1,563,602 to 1,565,116
_07065
PS417_07070: PS417_07070 - membrane protein, at 1,565,118 to 1,565,576
_07070
PS417_07075: PS417_07075 - tricarboxylic transport membrane protein, at 1,565,741 to 1,566,724
_07075
Position (kb) 1563
1564
1565
1566 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 1563.122 kb on + strand, within PS417_07060 at 1563.122 kb on + strand, within PS417_07060 at 1563.122 kb on + strand, within PS417_07060 at 1563.321 kb on + strand, within PS417_07060 at 1563.321 kb on + strand, within PS417_07060 at 1563.322 kb on - strand, within PS417_07060 at 1563.322 kb on - strand at 1563.322 kb on - strand, within PS417_07060 at 1563.322 kb on - strand, within PS417_07060 at 1563.322 kb on - strand, within PS417_07060 at 1563.841 kb on - strand, within PS417_07065 at 1563.841 kb on - strand, within PS417_07065 at 1563.900 kb on + strand, within PS417_07065 at 1564.095 kb on + strand, within PS417_07065 at 1564.095 kb on + strand, within PS417_07065 at 1564.096 kb on - strand, within PS417_07065 at 1564.096 kb on - strand, within PS417_07065 at 1564.276 kb on - strand, within PS417_07065 at 1564.276 kb on - strand, within PS417_07065 at 1564.276 kb on - strand, within PS417_07065 at 1564.317 kb on - strand, within PS417_07065 at 1564.388 kb on - strand, within PS417_07065 at 1564.388 kb on - strand, within PS417_07065 at 1564.388 kb on - strand, within PS417_07065 at 1565.012 kb on + strand at 1565.064 kb on + strand at 1565.064 kb on + strand at 1565.064 kb on + strand at 1565.064 kb on + strand at 1565.101 kb on - strand at 1565.110 kb on + strand at 1565.110 kb on + strand at 1565.111 kb on - strand at 1565.419 kb on + strand, within PS417_07070 at 1565.419 kb on + strand, within PS417_07070 at 1565.419 kb on + strand, within PS417_07070 at 1565.419 kb on + strand, within PS417_07070 at 1565.420 kb on - strand, within PS417_07070 at 1565.420 kb on - strand, within PS417_07070 at 1565.420 kb on - strand, within PS417_07070 at 1565.568 kb on + strand at 1565.568 kb on + strand at 1565.568 kb on + strand at 1565.568 kb on + strand at 1565.569 kb on - strand at 1565.569 kb on - strand at 1565.569 kb on - strand at 1565.621 kb on + strand at 1565.635 kb on - strand at 1565.635 kb on - strand at 1565.728 kb on + strand at 1565.803 kb on - strand at 1565.803 kb on - strand at 1565.916 kb on + strand, within PS417_07075 at 1565.946 kb on + strand, within PS417_07075
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,563,122 + PS417_07060 0.53 +0.2 1,563,122 + PS417_07060 0.53 -0.1 1,563,122 + PS417_07060 0.53 +0.2 1,563,321 + PS417_07060 0.72 -0.4 1,563,321 + PS417_07060 0.72 -0.9 1,563,322 - PS417_07060 0.72 +0.2 1,563,322 - -0.4 1,563,322 - PS417_07060 0.72 -0.8 1,563,322 - PS417_07060 0.72 -1.0 1,563,322 - PS417_07060 0.72 +0.3 1,563,841 - PS417_07065 0.16 +9.1 1,563,841 - PS417_07065 0.16 +8.3 1,563,900 + PS417_07065 0.20 +9.2 1,564,095 + PS417_07065 0.33 +9.2 1,564,095 + PS417_07065 0.33 +9.1 1,564,096 - PS417_07065 0.33 +9.5 1,564,096 - PS417_07065 0.33 +9.8 1,564,276 - PS417_07065 0.44 +9.0 1,564,276 - PS417_07065 0.44 +9.2 1,564,276 - PS417_07065 0.44 +9.1 1,564,317 - PS417_07065 0.47 +8.4 1,564,388 - PS417_07065 0.52 +9.3 1,564,388 - PS417_07065 0.52 +8.8 1,564,388 - PS417_07065 0.52 +9.2 1,565,012 + +10.0 1,565,064 + +9.5 1,565,064 + +8.5 1,565,064 + +7.9 1,565,064 + +10.1 1,565,101 - +9.0 1,565,110 + +9.1 1,565,110 + +8.6 1,565,111 - +6.8 1,565,419 + PS417_07070 0.66 +9.1 1,565,419 + PS417_07070 0.66 +9.2 1,565,419 + PS417_07070 0.66 +9.5 1,565,419 + PS417_07070 0.66 +6.9 1,565,420 - PS417_07070 0.66 +9.0 1,565,420 - PS417_07070 0.66 +9.1 1,565,420 - PS417_07070 0.66 +8.9 1,565,568 + +8.7 1,565,568 + +8.8 1,565,568 + +8.9 1,565,568 + +10.0 1,565,569 - +8.9 1,565,569 - +8.6 1,565,569 - +7.2 1,565,621 + +9.3 1,565,635 - +1.1 1,565,635 - +7.5 1,565,728 + +9.8 1,565,803 - +7.8 1,565,803 - +7.9 1,565,916 + PS417_07075 0.18 +7.7 1,565,946 + PS417_07075 0.21 +8.3
Or see this region's nucleotide sequence