Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4557

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4556 and Echvi_4557 are separated by 167 nucleotidesEchvi_4557 and Echvi_4558 are separated by 12 nucleotides Echvi_4556: Echvi_4556 - hypothetical protein, at 5,454,336 to 5,455,631 _4556 Echvi_4557: Echvi_4557 - Predicted transcriptional regulators, at 5,455,799 to 5,456,383 _4557 Echvi_4558: Echvi_4558 - putative phosphonate catabolism associated alcohol dehydrogenase, at 5,456,396 to 5,457,472 _4558 Position (kb) 5455 5456 5457Strain fitness (log2 ratio) -1 0 1 2at 5454.801 kb on + strand, within Echvi_4556at 5454.934 kb on + strand, within Echvi_4556at 5454.934 kb on + strand, within Echvi_4556at 5454.934 kb on + strand, within Echvi_4556at 5454.935 kb on - strand, within Echvi_4556at 5454.935 kb on - strand, within Echvi_4556at 5454.935 kb on - strand, within Echvi_4556at 5455.269 kb on + strand, within Echvi_4556at 5455.269 kb on + strand, within Echvi_4556at 5455.270 kb on - strand, within Echvi_4556at 5455.392 kb on - strand, within Echvi_4556at 5455.445 kb on + strand, within Echvi_4556at 5455.445 kb on + strand, within Echvi_4556at 5455.445 kb on + strand, within Echvi_4556at 5455.445 kb on + strand, within Echvi_4556at 5455.446 kb on - strand, within Echvi_4556at 5455.447 kb on + strand, within Echvi_4556at 5455.448 kb on - strand, within Echvi_4556at 5455.463 kb on + strand, within Echvi_4556at 5455.538 kb on + strandat 5455.549 kb on + strandat 5455.549 kb on + strandat 5455.550 kb on - strandat 5455.550 kb on - strandat 5455.550 kb on - strandat 5455.581 kb on + strandat 5455.581 kb on + strandat 5455.582 kb on - strandat 5455.590 kb on + strandat 5455.591 kb on - strandat 5455.612 kb on - strandat 5455.620 kb on + strandat 5455.749 kb on + strandat 5455.781 kb on + strandat 5455.799 kb on - strandat 5455.891 kb on + strand, within Echvi_4557at 5456.066 kb on + strand, within Echvi_4557at 5456.067 kb on - strand, within Echvi_4557at 5456.067 kb on - strand, within Echvi_4557at 5456.069 kb on - strand, within Echvi_4557at 5456.108 kb on + strand, within Echvi_4557at 5456.133 kb on + strand, within Echvi_4557at 5456.133 kb on + strand, within Echvi_4557at 5456.134 kb on - strand, within Echvi_4557at 5456.220 kb on + strand, within Echvi_4557at 5456.220 kb on + strand, within Echvi_4557at 5456.220 kb on + strand, within Echvi_4557at 5456.220 kb on + strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.221 kb on - strand, within Echvi_4557at 5456.222 kb on + strand, within Echvi_4557at 5456.241 kb on + strand, within Echvi_4557at 5456.241 kb on + strand, within Echvi_4557at 5456.242 kb on - strand, within Echvi_4557at 5456.340 kb on + strandat 5456.341 kb on - strandat 5456.364 kb on - strandat 5456.381 kb on + strandat 5456.381 kb on + strandat 5456.382 kb on - strandat 5456.652 kb on + strand, within Echvi_4558at 5456.672 kb on - strand, within Echvi_4558at 5456.684 kb on + strand, within Echvi_4558at 5456.684 kb on + strand, within Echvi_4558at 5456.708 kb on - strand, within Echvi_4558at 5456.747 kb on + strand, within Echvi_4558at 5456.747 kb on + strand, within Echvi_4558at 5456.748 kb on - strand, within Echvi_4558at 5456.748 kb on - strand, within Echvi_4558at 5456.780 kb on + strand, within Echvi_4558at 5456.835 kb on + strand, within Echvi_4558at 5456.836 kb on - strand, within Echvi_4558at 5456.836 kb on - strand, within Echvi_4558at 5456.836 kb on - strand, within Echvi_4558at 5456.840 kb on - strand, within Echvi_4558at 5456.919 kb on + strand, within Echvi_4558at 5456.919 kb on + strand, within Echvi_4558at 5457.231 kb on + strand, within Echvi_4558at 5457.291 kb on + strand, within Echvi_4558at 5457.291 kb on + strand, within Echvi_4558at 5457.292 kb on - strand, within Echvi_4558at 5457.308 kb on + strand, within Echvi_4558at 5457.308 kb on + strand, within Echvi_4558at 5457.308 kb on + strand, within Echvi_4558at 5457.309 kb on - strand, within Echvi_4558at 5457.309 kb on - strand, within Echvi_4558at 5457.310 kb on + strand, within Echvi_4558at 5457.329 kb on - strand, within Echvi_4558

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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5,454,801 + Echvi_4556 0.36 +0.9
5,454,934 + Echvi_4556 0.46 -0.8
5,454,934 + Echvi_4556 0.46 -0.2
5,454,934 + Echvi_4556 0.46 -0.9
5,454,935 - Echvi_4556 0.46 +0.8
5,454,935 - Echvi_4556 0.46 -0.5
5,454,935 - Echvi_4556 0.46 +0.5
5,455,269 + Echvi_4556 0.72 +1.2
5,455,269 + Echvi_4556 0.72 +2.2
5,455,270 - Echvi_4556 0.72 -0.2
5,455,392 - Echvi_4556 0.81 +1.4
5,455,445 + Echvi_4556 0.86 +1.4
5,455,445 + Echvi_4556 0.86 +0.3
5,455,445 + Echvi_4556 0.86 -0.7
5,455,445 + Echvi_4556 0.86 +0.3
5,455,446 - Echvi_4556 0.86 -0.4
5,455,447 + Echvi_4556 0.86 +0.2
5,455,448 - Echvi_4556 0.86 -0.1
5,455,463 + Echvi_4556 0.87 +0.7
5,455,538 + +0.1
5,455,549 + -0.8
5,455,549 + -0.4
5,455,550 - -0.4
5,455,550 - +0.6
5,455,550 - -0.2
5,455,581 + +0.6
5,455,581 + -0.0
5,455,582 - +0.5
5,455,590 + -0.6
5,455,591 - -0.4
5,455,612 - -0.2
5,455,620 + +0.9
5,455,749 + -0.2
5,455,781 + +0.3
5,455,799 - -0.3
5,455,891 + Echvi_4557 0.16 +0.0
5,456,066 + Echvi_4557 0.46 -0.0
5,456,067 - Echvi_4557 0.46 +0.5
5,456,067 - Echvi_4557 0.46 -0.6
5,456,069 - Echvi_4557 0.46 -0.9
5,456,108 + Echvi_4557 0.53 -1.3
5,456,133 + Echvi_4557 0.57 -0.0
5,456,133 + Echvi_4557 0.57 +0.3
5,456,134 - Echvi_4557 0.57 +0.7
5,456,220 + Echvi_4557 0.72 +0.5
5,456,220 + Echvi_4557 0.72 -0.8
5,456,220 + Echvi_4557 0.72 -0.7
5,456,220 + Echvi_4557 0.72 -0.1
5,456,221 - Echvi_4557 0.72 -0.8
5,456,221 - Echvi_4557 0.72 -0.2
5,456,221 - Echvi_4557 0.72 -0.7
5,456,221 - Echvi_4557 0.72 +0.4
5,456,221 - Echvi_4557 0.72 -1.0
5,456,221 - Echvi_4557 0.72 -0.8
5,456,222 + Echvi_4557 0.72 -0.5
5,456,241 + Echvi_4557 0.76 -0.6
5,456,241 + Echvi_4557 0.76 +0.5
5,456,242 - Echvi_4557 0.76 -0.2
5,456,340 + +0.1
5,456,341 - +0.6
5,456,364 - -0.3
5,456,381 + +0.7
5,456,381 + -0.3
5,456,382 - +1.2
5,456,652 + Echvi_4558 0.24 +1.1
5,456,672 - Echvi_4558 0.26 +0.1
5,456,684 + Echvi_4558 0.27 -0.2
5,456,684 + Echvi_4558 0.27 +1.9
5,456,708 - Echvi_4558 0.29 +1.2
5,456,747 + Echvi_4558 0.33 +0.4
5,456,747 + Echvi_4558 0.33 -0.7
5,456,748 - Echvi_4558 0.33 +0.2
5,456,748 - Echvi_4558 0.33 -0.4
5,456,780 + Echvi_4558 0.36 -0.5
5,456,835 + Echvi_4558 0.41 +1.0
5,456,836 - Echvi_4558 0.41 +0.0
5,456,836 - Echvi_4558 0.41 -1.3
5,456,836 - Echvi_4558 0.41 -1.2
5,456,840 - Echvi_4558 0.41 +0.1
5,456,919 + Echvi_4558 0.49 -0.3
5,456,919 + Echvi_4558 0.49 -0.2
5,457,231 + Echvi_4558 0.78 +1.4
5,457,291 + Echvi_4558 0.83 -0.1
5,457,291 + Echvi_4558 0.83 -1.0
5,457,292 - Echvi_4558 0.83 -0.3
5,457,308 + Echvi_4558 0.85 -0.1
5,457,308 + Echvi_4558 0.85 +0.8
5,457,308 + Echvi_4558 0.85 -0.6
5,457,309 - Echvi_4558 0.85 +0.8
5,457,309 - Echvi_4558 0.85 +1.1
5,457,310 + Echvi_4558 0.85 -1.7
5,457,329 - Echvi_4558 0.87 +0.4

Or see this region's nucleotide sequence