Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4463

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4461 and Echvi_4462 overlap by 16 nucleotidesEchvi_4462 and Echvi_4463 overlap by 32 nucleotidesEchvi_4463 and Echvi_4464 are separated by 2 nucleotidesEchvi_4464 and Echvi_4465 are separated by 248 nucleotidesEchvi_4465 and Echvi_4466 are separated by 57 nucleotides Echvi_4461: Echvi_4461 - Na+/H+ antiporter NhaA, at 5,337,459 to 5,338,802 _4461 Echvi_4462: Echvi_4462 - Protein of unknown function (DUF3478)., at 5,338,787 to 5,339,143 _4462 Echvi_4463: Echvi_4463 - cation diffusion facilitator family transporter, at 5,339,112 to 5,340,047 _4463 Echvi_4464: Echvi_4464 - hypothetical protein, at 5,340,050 to 5,340,298 _4464 Echvi_4465: Echvi_4465 - hypothetical protein, at 5,340,547 to 5,340,909 _4465 Echvi_4466: Echvi_4466 - Co/Zn/Cd efflux system component, at 5,340,967 to 5,341,764 _4466 Position (kb) 5339 5340 5341Strain fitness (log2 ratio) -2 -1 0 1 2at 5338.139 kb on - strand, within Echvi_4461at 5338.179 kb on + strand, within Echvi_4461at 5338.179 kb on + strand, within Echvi_4461at 5338.180 kb on - strand, within Echvi_4461at 5338.214 kb on - strand, within Echvi_4461at 5338.235 kb on + strand, within Echvi_4461at 5338.325 kb on + strand, within Echvi_4461at 5338.326 kb on - strand, within Echvi_4461at 5338.341 kb on + strand, within Echvi_4461at 5338.341 kb on + strand, within Echvi_4461at 5338.343 kb on + strand, within Echvi_4461at 5338.344 kb on - strand, within Echvi_4461at 5338.362 kb on - strand, within Echvi_4461at 5338.394 kb on + strand, within Echvi_4461at 5338.395 kb on - strand, within Echvi_4461at 5338.395 kb on - strand, within Echvi_4461at 5338.398 kb on + strand, within Echvi_4461at 5338.398 kb on + strand, within Echvi_4461at 5338.398 kb on + strand, within Echvi_4461at 5338.399 kb on - strand, within Echvi_4461at 5338.421 kb on + strand, within Echvi_4461at 5338.426 kb on - strand, within Echvi_4461at 5338.428 kb on + strand, within Echvi_4461at 5338.504 kb on - strand, within Echvi_4461at 5338.520 kb on + strand, within Echvi_4461at 5338.521 kb on - strand, within Echvi_4461at 5338.549 kb on - strand, within Echvi_4461at 5338.635 kb on - strand, within Echvi_4461at 5338.635 kb on - strand, within Echvi_4461at 5338.639 kb on + strand, within Echvi_4461at 5338.640 kb on - strand, within Echvi_4461at 5338.710 kb on + strandat 5338.711 kb on - strandat 5338.734 kb on + strandat 5338.761 kb on - strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.762 kb on + strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.763 kb on - strandat 5338.767 kb on + strandat 5338.767 kb on + strandat 5338.767 kb on + strandat 5338.768 kb on - strandat 5338.768 kb on - strandat 5338.856 kb on - strand, within Echvi_4462at 5338.931 kb on - strand, within Echvi_4462at 5338.974 kb on - strand, within Echvi_4462at 5338.975 kb on + strand, within Echvi_4462at 5338.975 kb on + strand, within Echvi_4462at 5339.036 kb on + strand, within Echvi_4462at 5339.038 kb on + strand, within Echvi_4462at 5339.038 kb on + strand, within Echvi_4462at 5339.041 kb on + strand, within Echvi_4462at 5339.042 kb on - strand, within Echvi_4462at 5339.101 kb on + strand, within Echvi_4462at 5339.102 kb on - strand, within Echvi_4462at 5339.107 kb on + strand, within Echvi_4462at 5339.108 kb on - strandat 5339.110 kb on + strandat 5339.110 kb on + strandat 5339.110 kb on + strandat 5339.113 kb on + strandat 5339.133 kb on - strandat 5339.133 kb on - strandat 5339.133 kb on - strandat 5339.138 kb on + strandat 5339.169 kb on + strandat 5339.169 kb on + strandat 5339.177 kb on + strandat 5339.177 kb on + strandat 5339.177 kb on + strandat 5339.223 kb on + strand, within Echvi_4463at 5339.236 kb on - strand, within Echvi_4463at 5339.253 kb on + strand, within Echvi_4463at 5339.280 kb on - strand, within Echvi_4463at 5339.449 kb on + strand, within Echvi_4463at 5339.472 kb on - strand, within Echvi_4463at 5339.493 kb on + strand, within Echvi_4463at 5339.501 kb on - strand, within Echvi_4463at 5339.555 kb on + strand, within Echvi_4463at 5339.555 kb on + strand, within Echvi_4463at 5339.556 kb on - strand, within Echvi_4463at 5339.640 kb on + strand, within Echvi_4463at 5339.668 kb on - strand, within Echvi_4463at 5339.670 kb on + strand, within Echvi_4463at 5339.671 kb on - strand, within Echvi_4463at 5339.679 kb on + strand, within Echvi_4463at 5339.684 kb on + strand, within Echvi_4463at 5339.685 kb on - strand, within Echvi_4463at 5339.685 kb on - strand, within Echvi_4463at 5339.685 kb on - strand, within Echvi_4463at 5339.685 kb on - strand, within Echvi_4463at 5339.686 kb on + strand, within Echvi_4463at 5339.687 kb on - strand, within Echvi_4463at 5339.717 kb on + strand, within Echvi_4463at 5339.726 kb on + strand, within Echvi_4463at 5339.727 kb on - strand, within Echvi_4463at 5339.736 kb on + strand, within Echvi_4463at 5339.857 kb on - strand, within Echvi_4463at 5339.910 kb on + strand, within Echvi_4463at 5339.913 kb on - strand, within Echvi_4463at 5339.913 kb on - strand, within Echvi_4463at 5339.920 kb on + strand, within Echvi_4463at 5339.921 kb on - strand, within Echvi_4463at 5339.921 kb on - strand, within Echvi_4463at 5339.957 kb on + strandat 5339.965 kb on - strandat 5340.018 kb on - strandat 5340.018 kb on - strandat 5340.089 kb on + strand, within Echvi_4464at 5340.090 kb on - strand, within Echvi_4464at 5340.111 kb on - strand, within Echvi_4464at 5340.111 kb on - strand, within Echvi_4464at 5340.158 kb on + strand, within Echvi_4464at 5340.159 kb on - strand, within Echvi_4464at 5340.159 kb on - strand, within Echvi_4464at 5340.219 kb on + strand, within Echvi_4464at 5340.219 kb on + strand, within Echvi_4464at 5340.252 kb on + strand, within Echvi_4464at 5340.253 kb on - strand, within Echvi_4464at 5340.256 kb on + strand, within Echvi_4464at 5340.257 kb on - strand, within Echvi_4464at 5340.270 kb on + strand, within Echvi_4464at 5340.271 kb on - strand, within Echvi_4464at 5340.271 kb on - strand, within Echvi_4464at 5340.271 kb on - strand, within Echvi_4464at 5340.276 kb on + strandat 5340.276 kb on + strandat 5340.311 kb on + strandat 5340.323 kb on + strandat 5340.333 kb on + strandat 5340.355 kb on + strandat 5340.355 kb on + strandat 5340.355 kb on + strandat 5340.355 kb on + strandat 5340.356 kb on - strandat 5340.356 kb on - strandat 5340.356 kb on - strandat 5340.356 kb on - strandat 5340.368 kb on - strandat 5340.538 kb on + strandat 5340.601 kb on + strand, within Echvi_4465at 5340.636 kb on + strand, within Echvi_4465at 5340.637 kb on - strand, within Echvi_4465at 5340.725 kb on + strand, within Echvi_4465at 5340.726 kb on - strand, within Echvi_4465at 5340.726 kb on - strand, within Echvi_4465at 5340.726 kb on - strand, within Echvi_4465at 5340.727 kb on + strand, within Echvi_4465at 5340.728 kb on - strand, within Echvi_4465at 5340.771 kb on - strand, within Echvi_4465at 5340.771 kb on - strand, within Echvi_4465at 5340.850 kb on - strand, within Echvi_4465at 5340.915 kb on + strandat 5340.922 kb on + strandat 5340.943 kb on + strandat 5340.943 kb on + strandat 5340.947 kb on + strandat 5340.948 kb on - strandat 5340.950 kb on + strandat 5340.950 kb on + strandat 5340.950 kb on + strandat 5340.950 kb on + strandat 5340.950 kb on + strandat 5340.952 kb on + strandat 5340.952 kb on + strandat 5340.989 kb on - strandat 5340.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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5,338,139 - Echvi_4461 0.51 +1.0
5,338,179 + Echvi_4461 0.54 +0.3
5,338,179 + Echvi_4461 0.54 -0.4
5,338,180 - Echvi_4461 0.54 -0.3
5,338,214 - Echvi_4461 0.56 +1.0
5,338,235 + Echvi_4461 0.58 -1.5
5,338,325 + Echvi_4461 0.64 +0.8
5,338,326 - Echvi_4461 0.65 -0.1
5,338,341 + Echvi_4461 0.66 -0.4
5,338,341 + Echvi_4461 0.66 -0.3
5,338,343 + Echvi_4461 0.66 +1.1
5,338,344 - Echvi_4461 0.66 +1.2
5,338,362 - Echvi_4461 0.67 -1.1
5,338,394 + Echvi_4461 0.70 -0.4
5,338,395 - Echvi_4461 0.70 -0.9
5,338,395 - Echvi_4461 0.70 +0.8
5,338,398 + Echvi_4461 0.70 +0.3
5,338,398 + Echvi_4461 0.70 +0.8
5,338,398 + Echvi_4461 0.70 +0.2
5,338,399 - Echvi_4461 0.70 -0.5
5,338,421 + Echvi_4461 0.72 +0.3
5,338,426 - Echvi_4461 0.72 -0.2
5,338,428 + Echvi_4461 0.72 -1.0
5,338,504 - Echvi_4461 0.78 -2.0
5,338,520 + Echvi_4461 0.79 +0.2
5,338,521 - Echvi_4461 0.79 -0.2
5,338,549 - Echvi_4461 0.81 +0.5
5,338,635 - Echvi_4461 0.88 -1.3
5,338,635 - Echvi_4461 0.88 +0.2
5,338,639 + Echvi_4461 0.88 -1.0
5,338,640 - Echvi_4461 0.88 +0.3
5,338,710 + +0.7
5,338,711 - -0.5
5,338,734 + +0.1
5,338,761 - +0.0
5,338,762 + +0.2
5,338,762 + -0.7
5,338,762 + -0.7
5,338,762 + +0.2
5,338,762 + +0.2
5,338,762 + +1.0
5,338,762 + +0.7
5,338,763 - -1.2
5,338,763 - -1.2
5,338,763 - -0.5
5,338,763 - -0.8
5,338,763 - -0.2
5,338,763 - +0.6
5,338,763 - +0.3
5,338,763 - +0.1
5,338,763 - +0.1
5,338,763 - +0.9
5,338,763 - +0.3
5,338,767 + -0.7
5,338,767 + -0.0
5,338,767 + +0.2
5,338,768 - +0.4
5,338,768 - -0.9
5,338,856 - Echvi_4462 0.19 -0.1
5,338,931 - Echvi_4462 0.40 -0.1
5,338,974 - Echvi_4462 0.52 +1.0
5,338,975 + Echvi_4462 0.53 -0.2
5,338,975 + Echvi_4462 0.53 +1.3
5,339,036 + Echvi_4462 0.70 -1.0
5,339,038 + Echvi_4462 0.70 +0.5
5,339,038 + Echvi_4462 0.70 -1.0
5,339,041 + Echvi_4462 0.71 +0.6
5,339,042 - Echvi_4462 0.71 +0.2
5,339,101 + Echvi_4462 0.88 -0.3
5,339,102 - Echvi_4462 0.88 -0.5
5,339,107 + Echvi_4462 0.90 -0.3
5,339,108 - +0.1
5,339,110 + +1.3
5,339,110 + +0.3
5,339,110 + -0.4
5,339,113 + -0.6
5,339,133 - +0.3
5,339,133 - -0.1
5,339,133 - +1.6
5,339,138 + -0.5
5,339,169 + -0.2
5,339,169 + +0.1
5,339,177 + -0.5
5,339,177 + -0.2
5,339,177 + -1.3
5,339,223 + Echvi_4463 0.12 -0.3
5,339,236 - Echvi_4463 0.13 -0.1
5,339,253 + Echvi_4463 0.15 -0.6
5,339,280 - Echvi_4463 0.18 +0.1
5,339,449 + Echvi_4463 0.36 -0.7
5,339,472 - Echvi_4463 0.38 -1.2
5,339,493 + Echvi_4463 0.41 -0.5
5,339,501 - Echvi_4463 0.42 -0.8
5,339,555 + Echvi_4463 0.47 -0.0
5,339,555 + Echvi_4463 0.47 +0.7
5,339,556 - Echvi_4463 0.47 +0.7
5,339,640 + Echvi_4463 0.56 -0.7
5,339,668 - Echvi_4463 0.59 -0.2
5,339,670 + Echvi_4463 0.60 +0.4
5,339,671 - Echvi_4463 0.60 -0.3
5,339,679 + Echvi_4463 0.61 +0.1
5,339,684 + Echvi_4463 0.61 -0.8
5,339,685 - Echvi_4463 0.61 +1.4
5,339,685 - Echvi_4463 0.61 -0.2
5,339,685 - Echvi_4463 0.61 -0.3
5,339,685 - Echvi_4463 0.61 +0.2
5,339,686 + Echvi_4463 0.61 +0.1
5,339,687 - Echvi_4463 0.61 +0.3
5,339,717 + Echvi_4463 0.65 +1.8
5,339,726 + Echvi_4463 0.66 -0.2
5,339,727 - Echvi_4463 0.66 -0.8
5,339,736 + Echvi_4463 0.67 -0.6
5,339,857 - Echvi_4463 0.80 -0.6
5,339,910 + Echvi_4463 0.85 -0.2
5,339,913 - Echvi_4463 0.86 +0.0
5,339,913 - Echvi_4463 0.86 -0.2
5,339,920 + Echvi_4463 0.86 +0.3
5,339,921 - Echvi_4463 0.86 +0.8
5,339,921 - Echvi_4463 0.86 -0.8
5,339,957 + -0.3
5,339,965 - -1.9
5,340,018 - +0.0
5,340,018 - +0.1
5,340,089 + Echvi_4464 0.16 -0.1
5,340,090 - Echvi_4464 0.16 -0.3
5,340,111 - Echvi_4464 0.24 -0.0
5,340,111 - Echvi_4464 0.24 +0.7
5,340,158 + Echvi_4464 0.43 +0.8
5,340,159 - Echvi_4464 0.44 +0.3
5,340,159 - Echvi_4464 0.44 +1.4
5,340,219 + Echvi_4464 0.68 -1.4
5,340,219 + Echvi_4464 0.68 -0.4
5,340,252 + Echvi_4464 0.81 -0.8
5,340,253 - Echvi_4464 0.82 +1.1
5,340,256 + Echvi_4464 0.83 +0.6
5,340,257 - Echvi_4464 0.83 -0.0
5,340,270 + Echvi_4464 0.88 +1.5
5,340,271 - Echvi_4464 0.89 +0.2
5,340,271 - Echvi_4464 0.89 +0.5
5,340,271 - Echvi_4464 0.89 -0.3
5,340,276 + -0.4
5,340,276 + +0.4
5,340,311 + +0.4
5,340,323 + +0.1
5,340,333 + +0.2
5,340,355 + +0.3
5,340,355 + +0.9
5,340,355 + +0.4
5,340,355 + -0.1
5,340,356 - -0.0
5,340,356 - +0.1
5,340,356 - +0.4
5,340,356 - -2.2
5,340,368 - +0.3
5,340,538 + -0.1
5,340,601 + Echvi_4465 0.15 +0.2
5,340,636 + Echvi_4465 0.25 -0.0
5,340,637 - Echvi_4465 0.25 +0.2
5,340,725 + Echvi_4465 0.49 -0.1
5,340,726 - Echvi_4465 0.49 -0.3
5,340,726 - Echvi_4465 0.49 +1.3
5,340,726 - Echvi_4465 0.49 +0.1
5,340,727 + Echvi_4465 0.50 +0.6
5,340,728 - Echvi_4465 0.50 -0.1
5,340,771 - Echvi_4465 0.62 -0.3
5,340,771 - Echvi_4465 0.62 +1.7
5,340,850 - Echvi_4465 0.83 -0.2
5,340,915 + +0.1
5,340,922 + -0.5
5,340,943 + +0.1
5,340,943 + +0.1
5,340,947 + -0.2
5,340,948 - +0.1
5,340,950 + +0.9
5,340,950 + -0.7
5,340,950 + -1.1
5,340,950 + +0.1
5,340,950 + -0.0
5,340,952 + -1.9
5,340,952 + -0.3
5,340,989 - -1.2
5,340,995 - +0.1

Or see this region's nucleotide sequence