Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4134

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4133 and Echvi_4134 are separated by 1 nucleotidesEchvi_4134 and Echvi_4135 overlap by 4 nucleotides Echvi_4133: Echvi_4133 - RND family efflux transporter, MFP subunit, at 4,949,242 to 4,951,059 _4133 Echvi_4134: Echvi_4134 - Outer membrane protein, at 4,951,061 to 4,952,308 _4134 Echvi_4135: Echvi_4135 - Putative silver efflux pump, at 4,952,305 to 4,956,129 _4135 Position (kb) 4951 4952 4953Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4950.066 kb on + strand, within Echvi_4133at 4950.187 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.304 kb on + strand, within Echvi_4133at 4950.353 kb on + strand, within Echvi_4133at 4950.447 kb on + strand, within Echvi_4133at 4950.448 kb on - strand, within Echvi_4133at 4950.451 kb on + strand, within Echvi_4133at 4950.501 kb on + strand, within Echvi_4133at 4950.582 kb on + strand, within Echvi_4133at 4950.584 kb on + strand, within Echvi_4133at 4950.584 kb on + strand, within Echvi_4133at 4950.592 kb on + strand, within Echvi_4133at 4950.612 kb on - strand, within Echvi_4133at 4950.612 kb on - strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.742 kb on + strand, within Echvi_4133at 4950.756 kb on + strand, within Echvi_4133at 4950.801 kb on + strand, within Echvi_4133at 4950.812 kb on - strand, within Echvi_4133at 4950.812 kb on - strand, within Echvi_4133at 4951.036 kb on + strandat 4951.037 kb on - strandat 4951.039 kb on + strandat 4951.039 kb on + strandat 4951.048 kb on - strandat 4951.048 kb on - strandat 4951.062 kb on + strandat 4951.063 kb on - strandat 4951.079 kb on + strandat 4951.083 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.203 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.259 kb on + strand, within Echvi_4134at 4951.268 kb on + strand, within Echvi_4134at 4951.303 kb on + strand, within Echvi_4134at 4951.303 kb on + strand, within Echvi_4134at 4951.308 kb on + strand, within Echvi_4134at 4951.332 kb on + strand, within Echvi_4134at 4951.353 kb on + strand, within Echvi_4134at 4951.399 kb on + strand, within Echvi_4134at 4951.428 kb on - strand, within Echvi_4134at 4951.508 kb on + strand, within Echvi_4134at 4951.508 kb on + strand, within Echvi_4134at 4951.509 kb on - strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.556 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.708 kb on + strand, within Echvi_4134at 4951.816 kb on + strand, within Echvi_4134at 4951.816 kb on + strand, within Echvi_4134at 4951.817 kb on - strand, within Echvi_4134at 4951.819 kb on + strand, within Echvi_4134at 4951.860 kb on + strand, within Echvi_4134at 4951.861 kb on - strand, within Echvi_4134at 4951.947 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.955 kb on + strand, within Echvi_4134at 4951.983 kb on + strand, within Echvi_4134at 4952.032 kb on + strand, within Echvi_4134at 4952.032 kb on + strand, within Echvi_4134at 4952.128 kb on + strand, within Echvi_4134at 4952.128 kb on + strand, within Echvi_4134at 4952.143 kb on + strand, within Echvi_4134at 4952.144 kb on - strand, within Echvi_4134at 4952.259 kb on - strandat 4952.276 kb on + strandat 4952.294 kb on + strandat 4952.348 kb on + strandat 4952.424 kb on + strandat 4952.427 kb on + strandat 4952.427 kb on + strandat 4952.470 kb on + strandat 4952.506 kb on + strandat 4952.591 kb on + strandat 4952.601 kb on + strandat 4952.601 kb on + strandat 4952.640 kb on + strandat 4952.640 kb on + strandat 4952.700 kb on + strand, within Echvi_4135at 4952.701 kb on - strand, within Echvi_4135at 4952.703 kb on + strand, within Echvi_4135at 4952.744 kb on + strand, within Echvi_4135at 4952.744 kb on + strand, within Echvi_4135at 4952.772 kb on + strand, within Echvi_4135at 4952.834 kb on + strand, within Echvi_4135at 4952.834 kb on + strand, within Echvi_4135at 4952.839 kb on + strand, within Echvi_4135at 4952.930 kb on + strand, within Echvi_4135at 4952.930 kb on + strand, within Echvi_4135at 4952.953 kb on + strand, within Echvi_4135at 4952.953 kb on + strand, within Echvi_4135at 4952.968 kb on + strand, within Echvi_4135at 4952.968 kb on + strand, within Echvi_4135at 4953.020 kb on + strand, within Echvi_4135at 4953.044 kb on - strand, within Echvi_4135at 4953.047 kb on + strand, within Echvi_4135at 4953.047 kb on + strand, within Echvi_4135at 4953.047 kb on + strand, within Echvi_4135at 4953.048 kb on - strand, within Echvi_4135at 4953.052 kb on + strand, within Echvi_4135at 4953.094 kb on + strand, within Echvi_4135at 4953.094 kb on + strandat 4953.098 kb on + strand, within Echvi_4135at 4953.098 kb on + strand, within Echvi_4135at 4953.112 kb on + strand, within Echvi_4135at 4953.127 kb on + strand, within Echvi_4135at 4953.127 kb on + strand, within Echvi_4135at 4953.240 kb on + strand, within Echvi_4135at 4953.240 kb on + strand, within Echvi_4135at 4953.240 kb on + strand, within Echvi_4135at 4953.241 kb on - strand, within Echvi_4135at 4953.241 kb on - strand, within Echvi_4135at 4953.241 kb on - strand, within Echvi_4135at 4953.287 kb on - strand, within Echvi_4135at 4953.308 kb on + strand, within Echvi_4135

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,950,066 + Echvi_4133 0.45 +0.3
4,950,187 + Echvi_4133 0.52 +0.0
4,950,196 + Echvi_4133 0.52 +0.0
4,950,196 + Echvi_4133 0.52 -0.0
4,950,196 + Echvi_4133 0.52 -0.7
4,950,284 + Echvi_4133 0.57 -0.4
4,950,284 + Echvi_4133 0.57 -0.3
4,950,284 + Echvi_4133 0.57 -1.5
4,950,284 + Echvi_4133 0.57 -1.7
4,950,304 + Echvi_4133 0.58 +0.2
4,950,353 + Echvi_4133 0.61 -0.2
4,950,447 + Echvi_4133 0.66 -0.3
4,950,448 - Echvi_4133 0.66 -1.7
4,950,451 + Echvi_4133 0.67 -0.6
4,950,501 + Echvi_4133 0.69 +0.6
4,950,582 + Echvi_4133 0.74 -0.9
4,950,584 + Echvi_4133 0.74 +1.5
4,950,584 + Echvi_4133 0.74 +0.3
4,950,592 + Echvi_4133 0.74 +0.8
4,950,612 - Echvi_4133 0.75 +0.3
4,950,612 - Echvi_4133 0.75 -0.1
4,950,735 + Echvi_4133 0.82 +0.1
4,950,735 + Echvi_4133 0.82 +0.7
4,950,735 + Echvi_4133 0.82 +0.5
4,950,735 + Echvi_4133 0.82 -0.5
4,950,742 + Echvi_4133 0.83 +0.8
4,950,756 + Echvi_4133 0.83 -0.5
4,950,801 + Echvi_4133 0.86 +0.1
4,950,812 - Echvi_4133 0.86 -1.1
4,950,812 - Echvi_4133 0.86 -1.1
4,951,036 + -0.4
4,951,037 - -1.3
4,951,039 + +1.6
4,951,039 + -0.1
4,951,048 - -1.1
4,951,048 - -1.7
4,951,062 + -0.7
4,951,063 - -0.8
4,951,079 + +0.0
4,951,083 + +0.3
4,951,088 + -1.6
4,951,088 + -0.3
4,951,088 + +0.3
4,951,088 + -1.2
4,951,088 + -0.4
4,951,203 + Echvi_4134 0.11 -0.5
4,951,257 + Echvi_4134 0.16 -0.2
4,951,257 + Echvi_4134 0.16 +0.1
4,951,257 + Echvi_4134 0.16 -0.8
4,951,259 + Echvi_4134 0.16 -0.4
4,951,268 + Echvi_4134 0.17 +0.1
4,951,303 + Echvi_4134 0.19 -0.1
4,951,303 + Echvi_4134 0.19 -0.6
4,951,308 + Echvi_4134 0.20 -0.1
4,951,332 + Echvi_4134 0.22 -0.7
4,951,353 + Echvi_4134 0.23 -0.2
4,951,399 + Echvi_4134 0.27 +0.4
4,951,428 - Echvi_4134 0.29 -2.8
4,951,508 + Echvi_4134 0.36 +0.9
4,951,508 + Echvi_4134 0.36 -0.8
4,951,509 - Echvi_4134 0.36 -1.5
4,951,549 + Echvi_4134 0.39 +0.3
4,951,549 + Echvi_4134 0.39 +0.6
4,951,549 + Echvi_4134 0.39 -0.3
4,951,549 + Echvi_4134 0.39 +0.1
4,951,556 + Echvi_4134 0.40 -0.6
4,951,684 + Echvi_4134 0.50 +0.2
4,951,684 + Echvi_4134 0.50 +2.5
4,951,684 + Echvi_4134 0.50 -1.1
4,951,684 + Echvi_4134 0.50 -0.4
4,951,708 + Echvi_4134 0.52 -0.7
4,951,816 + Echvi_4134 0.60 -0.8
4,951,816 + Echvi_4134 0.60 +0.5
4,951,817 - Echvi_4134 0.61 -0.6
4,951,819 + Echvi_4134 0.61 -0.6
4,951,860 + Echvi_4134 0.64 -0.6
4,951,861 - Echvi_4134 0.64 -1.6
4,951,947 + Echvi_4134 0.71 -1.6
4,951,950 + Echvi_4134 0.71 -0.7
4,951,950 + Echvi_4134 0.71 -0.6
4,951,950 + Echvi_4134 0.71 -0.7
4,951,950 + Echvi_4134 0.71 +0.3
4,951,950 + Echvi_4134 0.71 -0.4
4,951,955 + Echvi_4134 0.72 +0.0
4,951,983 + Echvi_4134 0.74 +0.1
4,952,032 + Echvi_4134 0.78 +0.2
4,952,032 + Echvi_4134 0.78 +0.0
4,952,128 + Echvi_4134 0.85 +0.1
4,952,128 + Echvi_4134 0.85 +0.1
4,952,143 + Echvi_4134 0.87 +0.1
4,952,144 - Echvi_4134 0.87 -0.3
4,952,259 - -0.4
4,952,276 + -0.9
4,952,294 + -1.5
4,952,348 + +0.7
4,952,424 + -0.2
4,952,427 + +0.1
4,952,427 + -0.5
4,952,470 + -0.3
4,952,506 + +1.5
4,952,591 + -0.9
4,952,601 + -0.7
4,952,601 + -1.5
4,952,640 + +1.1
4,952,640 + +1.5
4,952,700 + Echvi_4135 0.10 +0.6
4,952,701 - Echvi_4135 0.10 -1.5
4,952,703 + Echvi_4135 0.10 +1.3
4,952,744 + Echvi_4135 0.11 -0.7
4,952,744 + Echvi_4135 0.11 +0.4
4,952,772 + Echvi_4135 0.12 -0.8
4,952,834 + Echvi_4135 0.14 -2.7
4,952,834 + Echvi_4135 0.14 -0.6
4,952,839 + Echvi_4135 0.14 +0.9
4,952,930 + Echvi_4135 0.16 -0.4
4,952,930 + Echvi_4135 0.16 +0.2
4,952,953 + Echvi_4135 0.17 +0.0
4,952,953 + Echvi_4135 0.17 -0.0
4,952,968 + Echvi_4135 0.17 -0.2
4,952,968 + Echvi_4135 0.17 -1.2
4,953,020 + Echvi_4135 0.19 +0.8
4,953,044 - Echvi_4135 0.19 -0.3
4,953,047 + Echvi_4135 0.19 +0.3
4,953,047 + Echvi_4135 0.19 +0.0
4,953,047 + Echvi_4135 0.19 -0.2
4,953,048 - Echvi_4135 0.19 -1.4
4,953,052 + Echvi_4135 0.20 +0.2
4,953,094 + Echvi_4135 0.21 +0.1
4,953,094 + +0.2
4,953,098 + Echvi_4135 0.21 -0.2
4,953,098 + Echvi_4135 0.21 -0.1
4,953,112 + Echvi_4135 0.21 -0.0
4,953,127 + Echvi_4135 0.21 -0.1
4,953,127 + Echvi_4135 0.21 +0.3
4,953,240 + Echvi_4135 0.24 -0.3
4,953,240 + Echvi_4135 0.24 +0.1
4,953,240 + Echvi_4135 0.24 -1.5
4,953,241 - Echvi_4135 0.24 +0.5
4,953,241 - Echvi_4135 0.24 -0.8
4,953,241 - Echvi_4135 0.24 -1.3
4,953,287 - Echvi_4135 0.26 -1.3
4,953,308 + Echvi_4135 0.26 -1.5

Or see this region's nucleotide sequence