Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4133

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4131 and Echvi_4132 are separated by 6 nucleotidesEchvi_4132 and Echvi_4133 are separated by 139 nucleotidesEchvi_4133 and Echvi_4134 are separated by 1 nucleotides Echvi_4131: Echvi_4131 - Predicted membrane protein, at 4,948,110 to 4,948,565 _4131 Echvi_4132: Echvi_4132 - Protein of unknown function (DUF3347)., at 4,948,572 to 4,949,102 _4132 Echvi_4133: Echvi_4133 - RND family efflux transporter, MFP subunit, at 4,949,242 to 4,951,059 _4133 Echvi_4134: Echvi_4134 - Outer membrane protein, at 4,951,061 to 4,952,308 _4134 Position (kb) 4949 4950 4951 4952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4948.295 kb on + strand, within Echvi_4131at 4948.295 kb on + strand, within Echvi_4131at 4948.296 kb on - strand, within Echvi_4131at 4948.329 kb on + strand, within Echvi_4131at 4948.347 kb on + strand, within Echvi_4131at 4948.358 kb on + strand, within Echvi_4131at 4948.358 kb on + strand, within Echvi_4131at 4948.359 kb on - strand, within Echvi_4131at 4948.362 kb on + strand, within Echvi_4131at 4948.363 kb on - strand, within Echvi_4131at 4948.363 kb on - strand, within Echvi_4131at 4948.380 kb on + strand, within Echvi_4131at 4948.385 kb on - strand, within Echvi_4131at 4948.412 kb on + strand, within Echvi_4131at 4948.415 kb on + strand, within Echvi_4131at 4948.415 kb on + strand, within Echvi_4131at 4948.416 kb on - strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.417 kb on + strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.418 kb on - strand, within Echvi_4131at 4948.419 kb on + strand, within Echvi_4131at 4948.433 kb on + strand, within Echvi_4131at 4948.434 kb on - strand, within Echvi_4131at 4948.504 kb on - strand, within Echvi_4131at 4948.565 kb on + strandat 4948.574 kb on - strandat 4948.653 kb on + strand, within Echvi_4132at 4948.661 kb on - strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.704 kb on + strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.705 kb on - strand, within Echvi_4132at 4948.846 kb on - strand, within Echvi_4132at 4948.854 kb on + strand, within Echvi_4132at 4948.854 kb on + strand, within Echvi_4132at 4948.865 kb on + strand, within Echvi_4132at 4948.908 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.911 kb on + strand, within Echvi_4132at 4948.912 kb on - strand, within Echvi_4132at 4948.929 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.931 kb on + strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.932 kb on - strand, within Echvi_4132at 4948.933 kb on + strand, within Echvi_4132at 4948.934 kb on - strand, within Echvi_4132at 4948.934 kb on - strand, within Echvi_4132at 4948.942 kb on + strand, within Echvi_4132at 4948.942 kb on + strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.943 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132at 4948.981 kb on - strand, within Echvi_4132at 4949.092 kb on - strandat 4949.135 kb on + strandat 4949.153 kb on + strandat 4949.163 kb on - strandat 4949.192 kb on + strandat 4949.294 kb on + strandat 4949.343 kb on + strandat 4949.343 kb on + strandat 4949.343 kb on + strandat 4949.458 kb on + strand, within Echvi_4133at 4949.485 kb on + strand, within Echvi_4133at 4949.485 kb on + strand, within Echvi_4133at 4949.487 kb on + strand, within Echvi_4133at 4949.487 kb on + strand, within Echvi_4133at 4949.510 kb on + strand, within Echvi_4133at 4949.526 kb on + strand, within Echvi_4133at 4949.863 kb on + strand, within Echvi_4133at 4949.905 kb on + strand, within Echvi_4133at 4949.936 kb on - strand, within Echvi_4133at 4949.953 kb on + strand, within Echvi_4133at 4949.967 kb on + strand, within Echvi_4133at 4949.967 kb on + strand, within Echvi_4133at 4950.002 kb on + strand, within Echvi_4133at 4950.002 kb on + strand, within Echvi_4133at 4950.066 kb on + strand, within Echvi_4133at 4950.187 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.196 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.284 kb on + strand, within Echvi_4133at 4950.304 kb on + strand, within Echvi_4133at 4950.353 kb on + strand, within Echvi_4133at 4950.447 kb on + strand, within Echvi_4133at 4950.448 kb on - strand, within Echvi_4133at 4950.451 kb on + strand, within Echvi_4133at 4950.501 kb on + strand, within Echvi_4133at 4950.582 kb on + strand, within Echvi_4133at 4950.584 kb on + strand, within Echvi_4133at 4950.584 kb on + strand, within Echvi_4133at 4950.592 kb on + strand, within Echvi_4133at 4950.612 kb on - strand, within Echvi_4133at 4950.612 kb on - strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.735 kb on + strand, within Echvi_4133at 4950.742 kb on + strand, within Echvi_4133at 4950.756 kb on + strand, within Echvi_4133at 4950.801 kb on + strand, within Echvi_4133at 4950.812 kb on - strand, within Echvi_4133at 4950.812 kb on - strand, within Echvi_4133at 4951.036 kb on + strandat 4951.037 kb on - strandat 4951.039 kb on + strandat 4951.039 kb on + strandat 4951.048 kb on - strandat 4951.048 kb on - strandat 4951.062 kb on + strandat 4951.063 kb on - strandat 4951.079 kb on + strandat 4951.083 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.088 kb on + strandat 4951.203 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.257 kb on + strand, within Echvi_4134at 4951.259 kb on + strand, within Echvi_4134at 4951.268 kb on + strand, within Echvi_4134at 4951.303 kb on + strand, within Echvi_4134at 4951.303 kb on + strand, within Echvi_4134at 4951.308 kb on + strand, within Echvi_4134at 4951.332 kb on + strand, within Echvi_4134at 4951.353 kb on + strand, within Echvi_4134at 4951.399 kb on + strand, within Echvi_4134at 4951.428 kb on - strand, within Echvi_4134at 4951.508 kb on + strand, within Echvi_4134at 4951.508 kb on + strand, within Echvi_4134at 4951.509 kb on - strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.549 kb on + strand, within Echvi_4134at 4951.556 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.684 kb on + strand, within Echvi_4134at 4951.708 kb on + strand, within Echvi_4134at 4951.816 kb on + strand, within Echvi_4134at 4951.816 kb on + strand, within Echvi_4134at 4951.817 kb on - strand, within Echvi_4134at 4951.819 kb on + strand, within Echvi_4134at 4951.860 kb on + strand, within Echvi_4134at 4951.861 kb on - strand, within Echvi_4134at 4951.947 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.950 kb on + strand, within Echvi_4134at 4951.955 kb on + strand, within Echvi_4134at 4951.983 kb on + strand, within Echvi_4134at 4952.032 kb on + strand, within Echvi_4134at 4952.032 kb on + strand, within Echvi_4134

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
4,948,295 + Echvi_4131 0.41 -1.3
4,948,295 + Echvi_4131 0.41 +0.4
4,948,296 - Echvi_4131 0.41 -0.2
4,948,329 + Echvi_4131 0.48 -0.3
4,948,347 + Echvi_4131 0.52 +0.2
4,948,358 + Echvi_4131 0.54 -0.7
4,948,358 + Echvi_4131 0.54 +0.1
4,948,359 - Echvi_4131 0.55 -0.5
4,948,362 + Echvi_4131 0.55 +1.9
4,948,363 - Echvi_4131 0.55 +0.2
4,948,363 - Echvi_4131 0.55 -0.9
4,948,380 + Echvi_4131 0.59 -0.9
4,948,385 - Echvi_4131 0.60 +0.7
4,948,412 + Echvi_4131 0.66 -0.3
4,948,415 + Echvi_4131 0.67 -2.1
4,948,415 + Echvi_4131 0.67 -0.6
4,948,416 - Echvi_4131 0.67 -1.7
4,948,417 + Echvi_4131 0.67 -0.3
4,948,417 + Echvi_4131 0.67 +0.1
4,948,417 + Echvi_4131 0.67 +0.8
4,948,418 - Echvi_4131 0.68 -1.1
4,948,418 - Echvi_4131 0.68 -1.1
4,948,418 - Echvi_4131 0.68 -0.1
4,948,419 + Echvi_4131 0.68 +2.0
4,948,433 + Echvi_4131 0.71 +0.7
4,948,434 - Echvi_4131 0.71 -0.5
4,948,504 - Echvi_4131 0.86 -1.5
4,948,565 + -2.6
4,948,574 - -0.9
4,948,653 + Echvi_4132 0.15 +0.4
4,948,661 - Echvi_4132 0.17 -2.4
4,948,704 + Echvi_4132 0.25 +0.2
4,948,704 + Echvi_4132 0.25 -0.3
4,948,704 + Echvi_4132 0.25 +0.3
4,948,704 + Echvi_4132 0.25 -1.0
4,948,704 + Echvi_4132 0.25 -0.6
4,948,704 + Echvi_4132 0.25 +0.3
4,948,705 - Echvi_4132 0.25 -0.5
4,948,705 - Echvi_4132 0.25 +0.3
4,948,705 - Echvi_4132 0.25 +1.5
4,948,846 - Echvi_4132 0.52 -1.2
4,948,854 + Echvi_4132 0.53 +0.2
4,948,854 + Echvi_4132 0.53 -1.9
4,948,865 + Echvi_4132 0.55 +0.4
4,948,908 + Echvi_4132 0.63 -0.2
4,948,911 + Echvi_4132 0.64 +0.1
4,948,911 + Echvi_4132 0.64 -0.9
4,948,911 + Echvi_4132 0.64 -0.3
4,948,912 - Echvi_4132 0.64 +0.8
4,948,929 + Echvi_4132 0.67 -0.8
4,948,931 + Echvi_4132 0.68 +0.2
4,948,931 + Echvi_4132 0.68 +0.8
4,948,931 + Echvi_4132 0.68 -0.1
4,948,931 + Echvi_4132 0.68 -0.8
4,948,931 + Echvi_4132 0.68 -0.5
4,948,931 + Echvi_4132 0.68 +0.3
4,948,931 + Echvi_4132 0.68 -0.4
4,948,931 + Echvi_4132 0.68 +0.3
4,948,931 + Echvi_4132 0.68 -0.2
4,948,932 - Echvi_4132 0.68 -0.4
4,948,932 - Echvi_4132 0.68 -0.3
4,948,932 - Echvi_4132 0.68 -0.9
4,948,933 + Echvi_4132 0.68 +0.1
4,948,934 - Echvi_4132 0.68 -0.5
4,948,934 - Echvi_4132 0.68 +1.4
4,948,942 + Echvi_4132 0.70 +0.8
4,948,942 + Echvi_4132 0.70 +3.1
4,948,943 - Echvi_4132 0.70 -0.4
4,948,943 - Echvi_4132 0.70 +0.1
4,948,943 - Echvi_4132 0.70 +0.0
4,948,943 - Echvi_4132 0.70 -1.3
4,948,943 - Echvi_4132 0.70 -1.5
4,948,943 - Echvi_4132 0.70 -0.7
4,948,981 - Echvi_4132 0.77 +0.2
4,948,981 - Echvi_4132 0.77 +1.5
4,948,981 - Echvi_4132 0.77 -1.1
4,949,092 - -0.6
4,949,135 + +0.6
4,949,153 + +1.0
4,949,163 - -0.6
4,949,192 + -0.9
4,949,294 + +0.9
4,949,343 + +0.1
4,949,343 + -1.2
4,949,343 + +0.2
4,949,458 + Echvi_4133 0.12 +0.0
4,949,485 + Echvi_4133 0.13 -0.4
4,949,485 + Echvi_4133 0.13 -1.0
4,949,487 + Echvi_4133 0.13 +1.1
4,949,487 + Echvi_4133 0.13 +0.4
4,949,510 + Echvi_4133 0.15 -0.2
4,949,526 + Echvi_4133 0.16 -0.8
4,949,863 + Echvi_4133 0.34 +0.8
4,949,905 + Echvi_4133 0.36 +0.8
4,949,936 - Echvi_4133 0.38 -1.2
4,949,953 + Echvi_4133 0.39 +1.4
4,949,967 + Echvi_4133 0.40 +0.4
4,949,967 + Echvi_4133 0.40 +0.4
4,950,002 + Echvi_4133 0.42 +0.3
4,950,002 + Echvi_4133 0.42 -1.2
4,950,066 + Echvi_4133 0.45 +0.3
4,950,187 + Echvi_4133 0.52 +0.0
4,950,196 + Echvi_4133 0.52 +0.0
4,950,196 + Echvi_4133 0.52 -0.0
4,950,196 + Echvi_4133 0.52 -0.7
4,950,284 + Echvi_4133 0.57 -0.4
4,950,284 + Echvi_4133 0.57 -0.3
4,950,284 + Echvi_4133 0.57 -1.5
4,950,284 + Echvi_4133 0.57 -1.7
4,950,304 + Echvi_4133 0.58 +0.2
4,950,353 + Echvi_4133 0.61 -0.2
4,950,447 + Echvi_4133 0.66 -0.3
4,950,448 - Echvi_4133 0.66 -1.7
4,950,451 + Echvi_4133 0.67 -0.6
4,950,501 + Echvi_4133 0.69 +0.6
4,950,582 + Echvi_4133 0.74 -0.9
4,950,584 + Echvi_4133 0.74 +1.5
4,950,584 + Echvi_4133 0.74 +0.3
4,950,592 + Echvi_4133 0.74 +0.8
4,950,612 - Echvi_4133 0.75 +0.3
4,950,612 - Echvi_4133 0.75 -0.1
4,950,735 + Echvi_4133 0.82 +0.1
4,950,735 + Echvi_4133 0.82 +0.7
4,950,735 + Echvi_4133 0.82 +0.5
4,950,735 + Echvi_4133 0.82 -0.5
4,950,742 + Echvi_4133 0.83 +0.8
4,950,756 + Echvi_4133 0.83 -0.5
4,950,801 + Echvi_4133 0.86 +0.1
4,950,812 - Echvi_4133 0.86 -1.1
4,950,812 - Echvi_4133 0.86 -1.1
4,951,036 + -0.4
4,951,037 - -1.3
4,951,039 + +1.6
4,951,039 + -0.1
4,951,048 - -1.1
4,951,048 - -1.7
4,951,062 + -0.7
4,951,063 - -0.8
4,951,079 + +0.0
4,951,083 + +0.3
4,951,088 + -1.6
4,951,088 + -0.3
4,951,088 + +0.3
4,951,088 + -1.2
4,951,088 + -0.4
4,951,203 + Echvi_4134 0.11 -0.5
4,951,257 + Echvi_4134 0.16 -0.2
4,951,257 + Echvi_4134 0.16 +0.1
4,951,257 + Echvi_4134 0.16 -0.8
4,951,259 + Echvi_4134 0.16 -0.4
4,951,268 + Echvi_4134 0.17 +0.1
4,951,303 + Echvi_4134 0.19 -0.1
4,951,303 + Echvi_4134 0.19 -0.6
4,951,308 + Echvi_4134 0.20 -0.1
4,951,332 + Echvi_4134 0.22 -0.7
4,951,353 + Echvi_4134 0.23 -0.2
4,951,399 + Echvi_4134 0.27 +0.4
4,951,428 - Echvi_4134 0.29 -2.8
4,951,508 + Echvi_4134 0.36 +0.9
4,951,508 + Echvi_4134 0.36 -0.8
4,951,509 - Echvi_4134 0.36 -1.5
4,951,549 + Echvi_4134 0.39 +0.3
4,951,549 + Echvi_4134 0.39 +0.6
4,951,549 + Echvi_4134 0.39 -0.3
4,951,549 + Echvi_4134 0.39 +0.1
4,951,556 + Echvi_4134 0.40 -0.6
4,951,684 + Echvi_4134 0.50 +0.2
4,951,684 + Echvi_4134 0.50 +2.5
4,951,684 + Echvi_4134 0.50 -1.1
4,951,684 + Echvi_4134 0.50 -0.4
4,951,708 + Echvi_4134 0.52 -0.7
4,951,816 + Echvi_4134 0.60 -0.8
4,951,816 + Echvi_4134 0.60 +0.5
4,951,817 - Echvi_4134 0.61 -0.6
4,951,819 + Echvi_4134 0.61 -0.6
4,951,860 + Echvi_4134 0.64 -0.6
4,951,861 - Echvi_4134 0.64 -1.6
4,951,947 + Echvi_4134 0.71 -1.6
4,951,950 + Echvi_4134 0.71 -0.7
4,951,950 + Echvi_4134 0.71 -0.6
4,951,950 + Echvi_4134 0.71 -0.7
4,951,950 + Echvi_4134 0.71 +0.3
4,951,950 + Echvi_4134 0.71 -0.4
4,951,955 + Echvi_4134 0.72 +0.0
4,951,983 + Echvi_4134 0.74 +0.1
4,952,032 + Echvi_4134 0.78 +0.2
4,952,032 + Echvi_4134 0.78 +0.0

Or see this region's nucleotide sequence