Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4116

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4113 and Echvi_4114 are separated by 2 nucleotidesEchvi_4114 and Echvi_4115 are separated by 7 nucleotidesEchvi_4115 and Echvi_4116 are separated by 173 nucleotidesEchvi_4116 and Echvi_4117 are separated by 37 nucleotides Echvi_4113: Echvi_4113 - hypothetical protein, at 4,926,970 to 4,927,439 _4113 Echvi_4114: Echvi_4114 - hypothetical protein, at 4,927,442 to 4,927,678 _4114 Echvi_4115: Echvi_4115 - Nitrogen regulatory protein PII, at 4,927,686 to 4,928,027 _4115 Echvi_4116: Echvi_4116 - RND family efflux transporter, MFP subunit, at 4,928,201 to 4,929,433 _4116 Echvi_4117: Echvi_4117 - heavy metal efflux pump (cobalt-zinc-cadmium), at 4,929,471 to 4,933,916 _4117 Position (kb) 4928 4929 4930Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4927.276 kb on + strand, within Echvi_4113at 4927.344 kb on + strand, within Echvi_4113at 4927.345 kb on - strand, within Echvi_4113at 4927.350 kb on - strand, within Echvi_4113at 4927.361 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.392 kb on - strand, within Echvi_4113at 4927.440 kb on + strandat 4927.470 kb on + strand, within Echvi_4114at 4927.470 kb on + strand, within Echvi_4114at 4927.487 kb on + strand, within Echvi_4114at 4927.489 kb on + strand, within Echvi_4114at 4927.520 kb on + strand, within Echvi_4114at 4927.607 kb on + strand, within Echvi_4114at 4927.607 kb on + strand, within Echvi_4114at 4927.611 kb on + strand, within Echvi_4114at 4927.653 kb on + strand, within Echvi_4114at 4927.654 kb on - strand, within Echvi_4114at 4927.658 kb on + strandat 4927.659 kb on - strandat 4927.659 kb on - strandat 4927.679 kb on - strandat 4927.706 kb on + strandat 4927.752 kb on + strand, within Echvi_4115at 4927.753 kb on - strand, within Echvi_4115at 4927.756 kb on + strand, within Echvi_4115at 4927.756 kb on + strand, within Echvi_4115at 4927.757 kb on - strand, within Echvi_4115at 4927.757 kb on - strand, within Echvi_4115at 4927.757 kb on - strand, within Echvi_4115at 4927.760 kb on + strand, within Echvi_4115at 4927.793 kb on + strand, within Echvi_4115at 4927.794 kb on - strand, within Echvi_4115at 4927.815 kb on + strand, within Echvi_4115at 4927.816 kb on - strand, within Echvi_4115at 4927.816 kb on - strand, within Echvi_4115at 4927.816 kb on - strand, within Echvi_4115at 4927.816 kb on - strand, within Echvi_4115at 4927.816 kb on - strand, within Echvi_4115at 4928.032 kb on - strandat 4928.033 kb on + strandat 4928.039 kb on + strandat 4928.039 kb on + strandat 4928.093 kb on - strandat 4928.093 kb on - strandat 4928.094 kb on + strandat 4928.098 kb on + strandat 4928.099 kb on - strandat 4928.113 kb on + strandat 4928.114 kb on - strandat 4928.153 kb on + strandat 4928.153 kb on + strandat 4928.181 kb on - strandat 4928.195 kb on + strandat 4928.195 kb on + strandat 4928.195 kb on + strandat 4928.210 kb on - strandat 4928.210 kb on - strandat 4928.247 kb on + strandat 4928.248 kb on - strandat 4928.250 kb on + strandat 4928.251 kb on - strandat 4928.251 kb on - strandat 4928.251 kb on - strandat 4928.251 kb on - strandat 4928.340 kb on - strand, within Echvi_4116at 4928.397 kb on - strand, within Echvi_4116at 4928.404 kb on + strand, within Echvi_4116at 4928.405 kb on - strand, within Echvi_4116at 4928.490 kb on + strand, within Echvi_4116at 4928.490 kb on + strand, within Echvi_4116at 4928.504 kb on + strand, within Echvi_4116at 4928.518 kb on + strand, within Echvi_4116at 4928.519 kb on - strand, within Echvi_4116at 4928.538 kb on - strand, within Echvi_4116at 4928.538 kb on - strand, within Echvi_4116at 4928.584 kb on - strand, within Echvi_4116at 4928.597 kb on + strand, within Echvi_4116at 4928.598 kb on - strand, within Echvi_4116at 4928.651 kb on - strand, within Echvi_4116at 4928.676 kb on - strand, within Echvi_4116at 4928.693 kb on + strand, within Echvi_4116at 4928.693 kb on + strand, within Echvi_4116at 4928.693 kb on + strand, within Echvi_4116at 4928.694 kb on - strand, within Echvi_4116at 4928.694 kb on - strand, within Echvi_4116at 4928.694 kb on - strand, within Echvi_4116at 4928.695 kb on + strand, within Echvi_4116at 4928.695 kb on + strand, within Echvi_4116at 4928.695 kb on + strand, within Echvi_4116at 4928.695 kb on + strand, within Echvi_4116at 4928.696 kb on - strand, within Echvi_4116at 4928.762 kb on + strand, within Echvi_4116at 4928.776 kb on - strand, within Echvi_4116at 4928.801 kb on + strand, within Echvi_4116at 4928.801 kb on + strand, within Echvi_4116at 4928.801 kb on + strand, within Echvi_4116at 4928.801 kb on + strand, within Echvi_4116at 4928.802 kb on - strand, within Echvi_4116at 4928.802 kb on - strand, within Echvi_4116at 4928.805 kb on + strand, within Echvi_4116at 4928.806 kb on - strand, within Echvi_4116at 4928.806 kb on - strand, within Echvi_4116at 4928.806 kb on - strand, within Echvi_4116at 4928.806 kb on - strand, within Echvi_4116at 4928.806 kb on - strand, within Echvi_4116at 4928.922 kb on + strand, within Echvi_4116at 4928.930 kb on - strand, within Echvi_4116at 4928.952 kb on + strand, within Echvi_4116at 4928.953 kb on - strand, within Echvi_4116at 4928.953 kb on - strand, within Echvi_4116at 4928.988 kb on + strand, within Echvi_4116at 4928.993 kb on + strand, within Echvi_4116at 4929.019 kb on + strand, within Echvi_4116at 4929.019 kb on + strand, within Echvi_4116at 4929.019 kb on + strand, within Echvi_4116at 4929.026 kb on + strand, within Echvi_4116at 4929.073 kb on + strand, within Echvi_4116at 4929.095 kb on + strand, within Echvi_4116at 4929.095 kb on + strand, within Echvi_4116at 4929.096 kb on - strand, within Echvi_4116at 4929.110 kb on + strand, within Echvi_4116at 4929.110 kb on + strand, within Echvi_4116at 4929.115 kb on + strand, within Echvi_4116at 4929.127 kb on + strand, within Echvi_4116at 4929.127 kb on + strand, within Echvi_4116at 4929.159 kb on - strand, within Echvi_4116at 4929.245 kb on - strand, within Echvi_4116at 4929.254 kb on + strand, within Echvi_4116at 4929.254 kb on + strand, within Echvi_4116at 4929.260 kb on + strand, within Echvi_4116at 4929.289 kb on + strand, within Echvi_4116at 4929.383 kb on + strandat 4929.415 kb on - strandat 4929.415 kb on - strandat 4929.417 kb on - strandat 4929.440 kb on + strandat 4929.441 kb on - strandat 4929.448 kb on + strandat 4929.448 kb on + strandat 4929.448 kb on + strandat 4929.449 kb on - strandat 4929.451 kb on - strandat 4929.486 kb on + strandat 4929.487 kb on - strandat 4929.487 kb on - strandat 4929.490 kb on + strandat 4929.490 kb on + strandat 4929.490 kb on + strandat 4929.493 kb on + strandat 4929.520 kb on + strandat 4929.593 kb on - strandat 4929.598 kb on - strandat 4929.673 kb on + strandat 4929.673 kb on + strandat 4929.674 kb on - strandat 4929.822 kb on + strandat 4929.833 kb on + strandat 4929.833 kb on + strandat 4929.833 kb on + strandat 4929.834 kb on - strandat 4929.836 kb on + strandat 4929.836 kb on + strandat 4929.836 kb on + strandat 4929.837 kb on - strandat 4929.840 kb on + strandat 4929.841 kb on - strandat 4929.854 kb on - strandat 4929.873 kb on + strandat 4929.873 kb on + strandat 4929.874 kb on - strandat 4929.874 kb on - strandat 4929.889 kb on + strandat 4929.889 kb on + strandat 4929.890 kb on - strandat 4929.938 kb on + strand, within Echvi_4117at 4929.975 kb on + strand, within Echvi_4117at 4929.976 kb on - strand, within Echvi_4117at 4930.008 kb on - strand, within Echvi_4117at 4930.010 kb on - strand, within Echvi_4117at 4930.051 kb on - strand, within Echvi_4117at 4930.064 kb on + strand, within Echvi_4117at 4930.064 kb on + strand, within Echvi_4117at 4930.087 kb on - strand, within Echvi_4117at 4930.095 kb on + strand, within Echvi_4117at 4930.108 kb on + strand, within Echvi_4117at 4930.187 kb on + strand, within Echvi_4117at 4930.188 kb on - strand, within Echvi_4117at 4930.224 kb on + strand, within Echvi_4117at 4930.225 kb on - strand, within Echvi_4117at 4930.226 kb on + strand, within Echvi_4117at 4930.226 kb on + strand, within Echvi_4117at 4930.226 kb on + strand, within Echvi_4117at 4930.227 kb on - strand, within Echvi_4117at 4930.230 kb on + strand, within Echvi_4117at 4930.231 kb on - strand, within Echvi_4117at 4930.231 kb on - strand, within Echvi_4117at 4930.233 kb on - strand, within Echvi_4117at 4930.233 kb on - strand, within Echvi_4117at 4930.236 kb on + strand, within Echvi_4117at 4930.255 kb on + strand, within Echvi_4117at 4930.282 kb on + strand, within Echvi_4117at 4930.282 kb on + strand, within Echvi_4117at 4930.282 kb on + strand, within Echvi_4117at 4930.283 kb on - strand, within Echvi_4117at 4930.379 kb on + strand, within Echvi_4117at 4930.386 kb on - strand, within Echvi_4117at 4930.428 kb on + strand, within Echvi_4117at 4930.428 kb on + strand, within Echvi_4117

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,927,276 + Echvi_4113 0.65 -0.5
4,927,344 + Echvi_4113 0.80 -0.7
4,927,345 - Echvi_4113 0.80 -1.6
4,927,350 - Echvi_4113 0.81 +0.4
4,927,361 + Echvi_4113 0.83 +0.6
4,927,391 + Echvi_4113 0.90 -0.2
4,927,391 + Echvi_4113 0.90 +0.6
4,927,391 + Echvi_4113 0.90 -0.1
4,927,392 - Echvi_4113 0.90 -0.2
4,927,440 + +0.1
4,927,470 + Echvi_4114 0.12 +0.6
4,927,470 + Echvi_4114 0.12 -0.3
4,927,487 + Echvi_4114 0.19 -2.9
4,927,489 + Echvi_4114 0.20 +0.3
4,927,520 + Echvi_4114 0.33 -1.2
4,927,607 + Echvi_4114 0.70 -0.7
4,927,607 + Echvi_4114 0.70 -0.3
4,927,611 + Echvi_4114 0.71 +1.1
4,927,653 + Echvi_4114 0.89 +0.2
4,927,654 - Echvi_4114 0.89 +0.0
4,927,658 + -0.2
4,927,659 - +0.5
4,927,659 - -0.5
4,927,679 - -1.2
4,927,706 + -0.3
4,927,752 + Echvi_4115 0.19 +0.9
4,927,753 - Echvi_4115 0.20 +0.0
4,927,756 + Echvi_4115 0.20 +1.0
4,927,756 + Echvi_4115 0.20 +0.2
4,927,757 - Echvi_4115 0.21 -1.3
4,927,757 - Echvi_4115 0.21 -0.1
4,927,757 - Echvi_4115 0.21 -0.5
4,927,760 + Echvi_4115 0.22 +0.4
4,927,793 + Echvi_4115 0.31 -0.7
4,927,794 - Echvi_4115 0.32 +0.5
4,927,815 + Echvi_4115 0.38 -0.3
4,927,816 - Echvi_4115 0.38 -0.7
4,927,816 - Echvi_4115 0.38 +0.2
4,927,816 - Echvi_4115 0.38 -1.3
4,927,816 - Echvi_4115 0.38 +0.3
4,927,816 - Echvi_4115 0.38 -1.1
4,928,032 - -1.0
4,928,033 + +0.7
4,928,039 + -1.1
4,928,039 + -0.4
4,928,093 - +0.1
4,928,093 - -1.3
4,928,094 + +0.8
4,928,098 + -0.1
4,928,099 - -2.5
4,928,113 + +1.1
4,928,114 - +1.0
4,928,153 + +0.4
4,928,153 + -0.0
4,928,181 - -1.3
4,928,195 + -0.2
4,928,195 + -1.8
4,928,195 + -0.3
4,928,210 - -0.3
4,928,210 - -0.6
4,928,247 + -1.2
4,928,248 - +0.3
4,928,250 + -0.8
4,928,251 - -1.5
4,928,251 - +0.5
4,928,251 - +0.6
4,928,251 - -0.4
4,928,340 - Echvi_4116 0.11 -1.0
4,928,397 - Echvi_4116 0.16 +0.7
4,928,404 + Echvi_4116 0.16 -0.5
4,928,405 - Echvi_4116 0.17 -0.8
4,928,490 + Echvi_4116 0.23 -0.5
4,928,490 + Echvi_4116 0.23 -1.9
4,928,504 + Echvi_4116 0.25 -2.1
4,928,518 + Echvi_4116 0.26 -2.1
4,928,519 - Echvi_4116 0.26 -0.9
4,928,538 - Echvi_4116 0.27 -1.1
4,928,538 - Echvi_4116 0.27 -0.8
4,928,584 - Echvi_4116 0.31 -2.0
4,928,597 + Echvi_4116 0.32 -3.0
4,928,598 - Echvi_4116 0.32 +0.9
4,928,651 - Echvi_4116 0.36 -0.6
4,928,676 - Echvi_4116 0.39 -1.6
4,928,693 + Echvi_4116 0.40 -2.7
4,928,693 + Echvi_4116 0.40 -1.5
4,928,693 + Echvi_4116 0.40 -0.1
4,928,694 - Echvi_4116 0.40 -1.3
4,928,694 - Echvi_4116 0.40 -2.3
4,928,694 - Echvi_4116 0.40 -1.0
4,928,695 + Echvi_4116 0.40 -1.6
4,928,695 + Echvi_4116 0.40 -1.7
4,928,695 + Echvi_4116 0.40 -0.1
4,928,695 + Echvi_4116 0.40 -2.0
4,928,696 - Echvi_4116 0.40 -0.1
4,928,762 + Echvi_4116 0.45 -0.3
4,928,776 - Echvi_4116 0.47 -1.0
4,928,801 + Echvi_4116 0.49 +1.5
4,928,801 + Echvi_4116 0.49 -0.5
4,928,801 + Echvi_4116 0.49 -0.7
4,928,801 + Echvi_4116 0.49 +0.6
4,928,802 - Echvi_4116 0.49 -2.1
4,928,802 - Echvi_4116 0.49 -1.8
4,928,805 + Echvi_4116 0.49 -1.1
4,928,806 - Echvi_4116 0.49 -2.3
4,928,806 - Echvi_4116 0.49 -0.5
4,928,806 - Echvi_4116 0.49 -0.7
4,928,806 - Echvi_4116 0.49 -2.4
4,928,806 - Echvi_4116 0.49 -0.1
4,928,922 + Echvi_4116 0.58 -0.9
4,928,930 - Echvi_4116 0.59 -0.2
4,928,952 + Echvi_4116 0.61 -0.8
4,928,953 - Echvi_4116 0.61 -1.4
4,928,953 - Echvi_4116 0.61 +0.0
4,928,988 + Echvi_4116 0.64 -0.2
4,928,993 + Echvi_4116 0.64 -1.2
4,929,019 + Echvi_4116 0.66 +2.2
4,929,019 + Echvi_4116 0.66 -1.6
4,929,019 + Echvi_4116 0.66 -0.5
4,929,026 + Echvi_4116 0.67 -1.7
4,929,073 + Echvi_4116 0.71 +0.2
4,929,095 + Echvi_4116 0.73 -1.8
4,929,095 + Echvi_4116 0.73 -1.0
4,929,096 - Echvi_4116 0.73 -0.6
4,929,110 + Echvi_4116 0.74 -0.2
4,929,110 + Echvi_4116 0.74 -0.9
4,929,115 + Echvi_4116 0.74 +0.9
4,929,127 + Echvi_4116 0.75 -1.8
4,929,127 + Echvi_4116 0.75 -2.1
4,929,159 - Echvi_4116 0.78 -2.2
4,929,245 - Echvi_4116 0.85 -1.0
4,929,254 + Echvi_4116 0.85 +0.5
4,929,254 + Echvi_4116 0.85 -2.7
4,929,260 + Echvi_4116 0.86 -1.1
4,929,289 + Echvi_4116 0.88 +1.1
4,929,383 + -1.7
4,929,415 - -0.9
4,929,415 - -1.9
4,929,417 - -0.6
4,929,440 + +0.9
4,929,441 - +0.4
4,929,448 + -1.3
4,929,448 + -1.8
4,929,448 + -0.5
4,929,449 - +0.0
4,929,451 - -1.2
4,929,486 + -0.9
4,929,487 - -1.1
4,929,487 - -0.6
4,929,490 + -1.6
4,929,490 + -0.8
4,929,490 + +0.3
4,929,493 + -0.9
4,929,520 + -1.3
4,929,593 - -0.4
4,929,598 - -0.6
4,929,673 + -0.2
4,929,673 + -1.7
4,929,674 - -2.0
4,929,822 + -1.6
4,929,833 + -0.2
4,929,833 + +0.2
4,929,833 + -1.6
4,929,834 - -1.0
4,929,836 + +0.7
4,929,836 + -0.5
4,929,836 + -1.7
4,929,837 - -2.2
4,929,840 + -3.0
4,929,841 - -2.6
4,929,854 - -0.0
4,929,873 + -1.1
4,929,873 + -0.9
4,929,874 - -1.2
4,929,874 - -2.0
4,929,889 + -2.0
4,929,889 + -3.4
4,929,890 - -1.8
4,929,938 + Echvi_4117 0.11 -2.0
4,929,975 + Echvi_4117 0.11 -2.0
4,929,976 - Echvi_4117 0.11 -1.3
4,930,008 - Echvi_4117 0.12 -0.5
4,930,010 - Echvi_4117 0.12 -1.6
4,930,051 - Echvi_4117 0.13 -2.1
4,930,064 + Echvi_4117 0.13 -0.9
4,930,064 + Echvi_4117 0.13 -2.3
4,930,087 - Echvi_4117 0.14 -0.1
4,930,095 + Echvi_4117 0.14 -1.4
4,930,108 + Echvi_4117 0.14 +0.3
4,930,187 + Echvi_4117 0.16 -1.4
4,930,188 - Echvi_4117 0.16 -2.5
4,930,224 + Echvi_4117 0.17 -0.8
4,930,225 - Echvi_4117 0.17 +0.1
4,930,226 + Echvi_4117 0.17 -1.3
4,930,226 + Echvi_4117 0.17 -1.5
4,930,226 + Echvi_4117 0.17 -0.9
4,930,227 - Echvi_4117 0.17 -0.5
4,930,230 + Echvi_4117 0.17 -1.8
4,930,231 - Echvi_4117 0.17 -1.5
4,930,231 - Echvi_4117 0.17 -0.7
4,930,233 - Echvi_4117 0.17 -0.3
4,930,233 - Echvi_4117 0.17 -0.3
4,930,236 + Echvi_4117 0.17 -0.8
4,930,255 + Echvi_4117 0.18 -0.2
4,930,282 + Echvi_4117 0.18 -1.3
4,930,282 + Echvi_4117 0.18 -0.7
4,930,282 + Echvi_4117 0.18 -1.3
4,930,283 - Echvi_4117 0.18 -1.0
4,930,379 + Echvi_4117 0.20 -0.8
4,930,386 - Echvi_4117 0.21 +1.2
4,930,428 + Echvi_4117 0.22 -1.0
4,930,428 + Echvi_4117 0.22 -1.6

Or see this region's nucleotide sequence