Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4111

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4110 and Echvi_4111 are separated by 52 nucleotidesEchvi_4111 and Echvi_4112 are separated by 4 nucleotidesEchvi_4112 and Echvi_4113 are separated by 10 nucleotidesEchvi_4113 and Echvi_4114 are separated by 2 nucleotides Echvi_4110: Echvi_4110 - heavy metal translocating P-type ATPase, at 4,923,169 to 4,925,664 _4110 Echvi_4111: Echvi_4111 - hypothetical protein, at 4,925,717 to 4,926,526 _4111 Echvi_4112: Echvi_4112 - Fe2+/Zn2+ uptake regulation proteins, at 4,926,531 to 4,926,959 _4112 Echvi_4113: Echvi_4113 - hypothetical protein, at 4,926,970 to 4,927,439 _4113 Echvi_4114: Echvi_4114 - hypothetical protein, at 4,927,442 to 4,927,678 _4114 Position (kb) 4925 4926 4927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4924.802 kb on + strand, within Echvi_4110at 4924.802 kb on + strand, within Echvi_4110at 4924.843 kb on + strand, within Echvi_4110at 4924.873 kb on - strand, within Echvi_4110at 4924.873 kb on - strand, within Echvi_4110at 4924.882 kb on + strand, within Echvi_4110at 4924.882 kb on + strand, within Echvi_4110at 4924.883 kb on - strand, within Echvi_4110at 4924.910 kb on - strand, within Echvi_4110at 4924.976 kb on + strand, within Echvi_4110at 4924.977 kb on - strand, within Echvi_4110at 4924.988 kb on + strand, within Echvi_4110at 4924.989 kb on - strand, within Echvi_4110at 4924.993 kb on + strand, within Echvi_4110at 4924.993 kb on + strand, within Echvi_4110at 4924.993 kb on + strand, within Echvi_4110at 4924.994 kb on - strand, within Echvi_4110at 4924.996 kb on + strand, within Echvi_4110at 4924.996 kb on + strand, within Echvi_4110at 4924.996 kb on + strand, within Echvi_4110at 4925.028 kb on - strand, within Echvi_4110at 4925.070 kb on + strand, within Echvi_4110at 4925.195 kb on - strand, within Echvi_4110at 4925.213 kb on - strand, within Echvi_4110at 4925.221 kb on - strand, within Echvi_4110at 4925.251 kb on + strand, within Echvi_4110at 4925.401 kb on + strand, within Echvi_4110at 4925.402 kb on - strand, within Echvi_4110at 4925.408 kb on - strand, within Echvi_4110at 4925.416 kb on - strandat 4925.498 kb on + strandat 4925.498 kb on + strandat 4925.509 kb on + strandat 4925.592 kb on + strandat 4925.593 kb on - strandat 4925.597 kb on - strandat 4925.647 kb on + strandat 4925.648 kb on - strandat 4925.705 kb on + strandat 4925.750 kb on + strandat 4925.757 kb on + strandat 4925.757 kb on + strandat 4925.758 kb on - strandat 4925.776 kb on + strandat 4925.782 kb on + strandat 4925.790 kb on - strandat 4925.790 kb on - strandat 4925.793 kb on + strandat 4925.809 kb on + strand, within Echvi_4111at 4925.809 kb on + strand, within Echvi_4111at 4925.810 kb on - strand, within Echvi_4111at 4925.814 kb on + strand, within Echvi_4111at 4925.814 kb on + strand, within Echvi_4111at 4925.815 kb on - strand, within Echvi_4111at 4925.837 kb on + strand, within Echvi_4111at 4925.838 kb on - strand, within Echvi_4111at 4925.838 kb on - strand, within Echvi_4111at 4925.850 kb on + strand, within Echvi_4111at 4925.863 kb on + strand, within Echvi_4111at 4925.864 kb on - strand, within Echvi_4111at 4925.919 kb on - strand, within Echvi_4111at 4925.941 kb on - strand, within Echvi_4111at 4925.987 kb on - strand, within Echvi_4111at 4926.032 kb on - strand, within Echvi_4111at 4926.051 kb on - strand, within Echvi_4111at 4926.051 kb on - strand, within Echvi_4111at 4926.051 kb on - strand, within Echvi_4111at 4926.054 kb on + strand, within Echvi_4111at 4926.055 kb on - strand, within Echvi_4111at 4926.055 kb on - strand, within Echvi_4111at 4926.055 kb on - strand, within Echvi_4111at 4926.086 kb on + strand, within Echvi_4111at 4926.164 kb on + strand, within Echvi_4111at 4926.164 kb on + strand, within Echvi_4111at 4926.164 kb on + strand, within Echvi_4111at 4926.178 kb on + strand, within Echvi_4111at 4926.250 kb on + strand, within Echvi_4111at 4926.250 kb on + strand, within Echvi_4111at 4926.250 kb on + strand, within Echvi_4111at 4926.250 kb on + strand, within Echvi_4111at 4926.251 kb on - strand, within Echvi_4111at 4926.251 kb on - strand, within Echvi_4111at 4926.296 kb on - strand, within Echvi_4111at 4926.313 kb on + strand, within Echvi_4111at 4926.313 kb on + strand, within Echvi_4111at 4926.313 kb on + strand, within Echvi_4111at 4926.316 kb on + strand, within Echvi_4111at 4926.316 kb on + strand, within Echvi_4111at 4926.326 kb on + strand, within Echvi_4111at 4926.326 kb on + strand, within Echvi_4111at 4926.327 kb on - strand, within Echvi_4111at 4926.446 kb on - strandat 4926.446 kb on - strandat 4926.446 kb on - strandat 4926.529 kb on + strandat 4926.530 kb on - strandat 4926.532 kb on + strandat 4926.532 kb on + strandat 4926.533 kb on - strandat 4926.567 kb on + strandat 4926.644 kb on + strand, within Echvi_4112at 4926.693 kb on + strand, within Echvi_4112at 4926.693 kb on + strand, within Echvi_4112at 4926.705 kb on - strand, within Echvi_4112at 4926.727 kb on + strand, within Echvi_4112at 4926.727 kb on + strand, within Echvi_4112at 4926.727 kb on + strand, within Echvi_4112at 4926.753 kb on + strand, within Echvi_4112at 4926.754 kb on - strand, within Echvi_4112at 4926.754 kb on - strand, within Echvi_4112at 4926.755 kb on + strand, within Echvi_4112at 4926.755 kb on + strand, within Echvi_4112at 4926.755 kb on + strand, within Echvi_4112at 4926.756 kb on - strand, within Echvi_4112at 4926.762 kb on + strand, within Echvi_4112at 4926.763 kb on - strand, within Echvi_4112at 4926.763 kb on - strand, within Echvi_4112at 4926.789 kb on + strand, within Echvi_4112at 4926.799 kb on + strand, within Echvi_4112at 4926.800 kb on - strand, within Echvi_4112at 4926.822 kb on + strand, within Echvi_4112at 4926.823 kb on - strand, within Echvi_4112at 4926.836 kb on - strand, within Echvi_4112at 4926.924 kb on + strandat 4926.972 kb on + strandat 4926.976 kb on + strandat 4926.976 kb on + strandat 4926.979 kb on + strandat 4926.979 kb on + strandat 4926.979 kb on + strandat 4926.979 kb on + strandat 4926.980 kb on - strandat 4926.980 kb on - strandat 4926.980 kb on - strandat 4927.000 kb on + strandat 4927.001 kb on - strandat 4927.011 kb on + strandat 4927.011 kb on + strandat 4927.012 kb on - strandat 4927.181 kb on + strand, within Echvi_4113at 4927.200 kb on + strand, within Echvi_4113at 4927.276 kb on + strand, within Echvi_4113at 4927.344 kb on + strand, within Echvi_4113at 4927.345 kb on - strand, within Echvi_4113at 4927.350 kb on - strand, within Echvi_4113at 4927.361 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.391 kb on + strand, within Echvi_4113at 4927.392 kb on - strand, within Echvi_4113at 4927.440 kb on + strandat 4927.470 kb on + strand, within Echvi_4114at 4927.470 kb on + strand, within Echvi_4114at 4927.487 kb on + strand, within Echvi_4114at 4927.489 kb on + strand, within Echvi_4114at 4927.520 kb on + strand, within Echvi_4114

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,924,802 + Echvi_4110 0.65 -0.0
4,924,802 + Echvi_4110 0.65 -0.8
4,924,843 + Echvi_4110 0.67 -0.1
4,924,873 - Echvi_4110 0.68 +0.0
4,924,873 - Echvi_4110 0.68 -1.0
4,924,882 + Echvi_4110 0.69 +2.4
4,924,882 + Echvi_4110 0.69 +1.2
4,924,883 - Echvi_4110 0.69 -0.1
4,924,910 - Echvi_4110 0.70 +0.1
4,924,976 + Echvi_4110 0.72 +0.5
4,924,977 - Echvi_4110 0.72 -0.3
4,924,988 + Echvi_4110 0.73 +1.3
4,924,989 - Echvi_4110 0.73 +0.8
4,924,993 + Echvi_4110 0.73 +0.1
4,924,993 + Echvi_4110 0.73 -0.3
4,924,993 + Echvi_4110 0.73 -0.3
4,924,994 - Echvi_4110 0.73 -1.3
4,924,996 + Echvi_4110 0.73 +2.4
4,924,996 + Echvi_4110 0.73 +0.5
4,924,996 + Echvi_4110 0.73 -0.5
4,925,028 - Echvi_4110 0.74 +0.6
4,925,070 + Echvi_4110 0.76 -1.3
4,925,195 - Echvi_4110 0.81 -0.3
4,925,213 - Echvi_4110 0.82 -1.7
4,925,221 - Echvi_4110 0.82 -0.8
4,925,251 + Echvi_4110 0.83 -1.6
4,925,401 + Echvi_4110 0.89 +0.7
4,925,402 - Echvi_4110 0.89 -0.8
4,925,408 - Echvi_4110 0.90 -1.0
4,925,416 - +0.2
4,925,498 + -0.2
4,925,498 + +0.1
4,925,509 + -0.9
4,925,592 + +0.3
4,925,593 - -0.1
4,925,597 - -1.3
4,925,647 + -0.3
4,925,648 - +1.3
4,925,705 + -0.8
4,925,750 + +1.1
4,925,757 + +1.5
4,925,757 + +0.2
4,925,758 - -1.1
4,925,776 + +0.3
4,925,782 + +0.9
4,925,790 - -0.8
4,925,790 - -1.3
4,925,793 + +0.5
4,925,809 + Echvi_4111 0.11 +0.2
4,925,809 + Echvi_4111 0.11 -0.4
4,925,810 - Echvi_4111 0.11 -1.2
4,925,814 + Echvi_4111 0.12 +0.1
4,925,814 + Echvi_4111 0.12 -0.3
4,925,815 - Echvi_4111 0.12 -0.0
4,925,837 + Echvi_4111 0.15 +0.2
4,925,838 - Echvi_4111 0.15 -1.2
4,925,838 - Echvi_4111 0.15 +0.2
4,925,850 + Echvi_4111 0.16 -0.0
4,925,863 + Echvi_4111 0.18 +0.3
4,925,864 - Echvi_4111 0.18 -2.0
4,925,919 - Echvi_4111 0.25 +0.2
4,925,941 - Echvi_4111 0.28 +0.6
4,925,987 - Echvi_4111 0.33 -0.2
4,926,032 - Echvi_4111 0.39 +0.8
4,926,051 - Echvi_4111 0.41 -1.2
4,926,051 - Echvi_4111 0.41 -0.4
4,926,051 - Echvi_4111 0.41 -0.9
4,926,054 + Echvi_4111 0.42 -0.5
4,926,055 - Echvi_4111 0.42 +0.8
4,926,055 - Echvi_4111 0.42 -0.7
4,926,055 - Echvi_4111 0.42 +0.9
4,926,086 + Echvi_4111 0.46 -0.2
4,926,164 + Echvi_4111 0.55 +0.6
4,926,164 + Echvi_4111 0.55 -1.1
4,926,164 + Echvi_4111 0.55 -0.4
4,926,178 + Echvi_4111 0.57 +0.5
4,926,250 + Echvi_4111 0.66 +1.0
4,926,250 + Echvi_4111 0.66 -0.5
4,926,250 + Echvi_4111 0.66 -1.3
4,926,250 + Echvi_4111 0.66 +0.2
4,926,251 - Echvi_4111 0.66 +0.4
4,926,251 - Echvi_4111 0.66 +0.3
4,926,296 - Echvi_4111 0.71 +0.4
4,926,313 + Echvi_4111 0.74 -1.6
4,926,313 + Echvi_4111 0.74 +0.8
4,926,313 + Echvi_4111 0.74 +0.1
4,926,316 + Echvi_4111 0.74 -0.9
4,926,316 + Echvi_4111 0.74 -0.4
4,926,326 + Echvi_4111 0.75 +0.6
4,926,326 + Echvi_4111 0.75 -0.8
4,926,327 - Echvi_4111 0.75 -0.1
4,926,446 - -1.0
4,926,446 - -2.0
4,926,446 - -1.1
4,926,529 + -0.3
4,926,530 - -1.0
4,926,532 + +1.2
4,926,532 + -0.6
4,926,533 - -1.3
4,926,567 + +1.3
4,926,644 + Echvi_4112 0.26 -0.1
4,926,693 + Echvi_4112 0.38 +0.9
4,926,693 + Echvi_4112 0.38 +0.1
4,926,705 - Echvi_4112 0.41 -0.7
4,926,727 + Echvi_4112 0.46 -0.8
4,926,727 + Echvi_4112 0.46 -0.5
4,926,727 + Echvi_4112 0.46 +0.5
4,926,753 + Echvi_4112 0.52 -0.3
4,926,754 - Echvi_4112 0.52 -0.8
4,926,754 - Echvi_4112 0.52 +0.6
4,926,755 + Echvi_4112 0.52 +0.5
4,926,755 + Echvi_4112 0.52 +0.7
4,926,755 + Echvi_4112 0.52 +0.2
4,926,756 - Echvi_4112 0.52 +0.4
4,926,762 + Echvi_4112 0.54 -0.4
4,926,763 - Echvi_4112 0.54 -1.7
4,926,763 - Echvi_4112 0.54 -0.8
4,926,789 + Echvi_4112 0.60 -0.0
4,926,799 + Echvi_4112 0.62 +1.5
4,926,800 - Echvi_4112 0.63 -0.9
4,926,822 + Echvi_4112 0.68 +0.1
4,926,823 - Echvi_4112 0.68 -0.3
4,926,836 - Echvi_4112 0.71 -0.9
4,926,924 + +0.1
4,926,972 + +0.7
4,926,976 + +0.2
4,926,976 + +0.9
4,926,979 + +0.2
4,926,979 + +0.6
4,926,979 + +0.6
4,926,979 + -0.8
4,926,980 - -1.6
4,926,980 - -0.4
4,926,980 - +0.3
4,927,000 + -0.9
4,927,001 - -1.3
4,927,011 + -0.4
4,927,011 + -0.2
4,927,012 - -0.2
4,927,181 + Echvi_4113 0.45 -0.5
4,927,200 + Echvi_4113 0.49 -0.9
4,927,276 + Echvi_4113 0.65 -0.5
4,927,344 + Echvi_4113 0.80 -0.7
4,927,345 - Echvi_4113 0.80 -1.6
4,927,350 - Echvi_4113 0.81 +0.4
4,927,361 + Echvi_4113 0.83 +0.6
4,927,391 + Echvi_4113 0.90 -0.2
4,927,391 + Echvi_4113 0.90 +0.6
4,927,391 + Echvi_4113 0.90 -0.1
4,927,392 - Echvi_4113 0.90 -0.2
4,927,440 + +0.1
4,927,470 + Echvi_4114 0.12 +0.6
4,927,470 + Echvi_4114 0.12 -0.3
4,927,487 + Echvi_4114 0.19 -2.9
4,927,489 + Echvi_4114 0.20 +0.3
4,927,520 + Echvi_4114 0.33 -1.2

Or see this region's nucleotide sequence