Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3619

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3618 and Echvi_3619 are separated by 92 nucleotidesEchvi_3619 and Echvi_3620 are separated by 52 nucleotides Echvi_3618: Echvi_3618 - hypothetical protein, at 4,293,472 to 4,295,046 _3618 Echvi_3619: Echvi_3619 - RND family efflux transporter, MFP subunit, at 4,295,139 to 4,296,290 _3619 Echvi_3620: Echvi_3620 - heavy metal efflux pump (cobalt-zinc-cadmium), at 4,296,343 to 4,300,698 _3620 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -2 -1 0 1 2at 4294.226 kb on + strand, within Echvi_3618at 4294.226 kb on + strand, within Echvi_3618at 4294.246 kb on + strand, within Echvi_3618at 4294.247 kb on - strand, within Echvi_3618at 4294.249 kb on + strand, within Echvi_3618at 4294.249 kb on + strand, within Echvi_3618at 4294.282 kb on + strand, within Echvi_3618at 4294.283 kb on - strand, within Echvi_3618at 4294.283 kb on - strand, within Echvi_3618at 4294.285 kb on + strand, within Echvi_3618at 4294.285 kb on + strand, within Echvi_3618at 4294.286 kb on - strand, within Echvi_3618at 4294.322 kb on - strand, within Echvi_3618at 4294.326 kb on + strand, within Echvi_3618at 4294.326 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.430 kb on - strand, within Echvi_3618at 4294.432 kb on - strand, within Echvi_3618at 4294.433 kb on + strand, within Echvi_3618at 4294.462 kb on - strand, within Echvi_3618at 4294.462 kb on - strand, within Echvi_3618at 4294.479 kb on + strand, within Echvi_3618at 4294.498 kb on - strand, within Echvi_3618at 4294.499 kb on + strand, within Echvi_3618at 4294.499 kb on + strand, within Echvi_3618at 4294.563 kb on + strand, within Echvi_3618at 4294.617 kb on + strand, within Echvi_3618at 4294.617 kb on + strand, within Echvi_3618at 4294.618 kb on - strand, within Echvi_3618at 4294.618 kb on - strand, within Echvi_3618at 4294.668 kb on - strand, within Echvi_3618at 4294.723 kb on + strand, within Echvi_3618at 4294.723 kb on + strand, within Echvi_3618at 4294.724 kb on - strand, within Echvi_3618at 4294.724 kb on - strandat 4294.724 kb on - strand, within Echvi_3618at 4294.731 kb on - strand, within Echvi_3618at 4294.767 kb on + strand, within Echvi_3618at 4294.767 kb on + strand, within Echvi_3618at 4294.768 kb on - strand, within Echvi_3618at 4294.768 kb on - strand, within Echvi_3618at 4294.768 kb on - strand, within Echvi_3618at 4294.793 kb on - strand, within Echvi_3618at 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.002 kb on - strandat 4295.002 kb on - strandat 4295.002 kb on - strandat 4295.004 kb on + strandat 4295.004 kb on + strandat 4295.004 kb on + strandat 4295.005 kb on - strandat 4295.079 kb on - strandat 4295.093 kb on - strandat 4295.121 kb on + strandat 4295.186 kb on - strandat 4295.189 kb on - strandat 4295.196 kb on - strandat 4295.267 kb on + strand, within Echvi_3619at 4295.268 kb on - strand, within Echvi_3619at 4295.274 kb on + strand, within Echvi_3619at 4295.274 kb on + strand, within Echvi_3619at 4295.400 kb on + strand, within Echvi_3619at 4295.401 kb on - strand, within Echvi_3619at 4295.401 kb on - strand, within Echvi_3619at 4295.401 kb on - strand, within Echvi_3619at 4295.412 kb on + strand, within Echvi_3619at 4295.416 kb on + strand, within Echvi_3619at 4295.416 kb on + strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.417 kb on - strand, within Echvi_3619at 4295.465 kb on + strand, within Echvi_3619at 4295.466 kb on - strand, within Echvi_3619at 4295.509 kb on + strand, within Echvi_3619at 4295.509 kb on + strand, within Echvi_3619at 4295.509 kb on + strand, within Echvi_3619at 4295.510 kb on - strand, within Echvi_3619at 4295.510 kb on - strand, within Echvi_3619at 4295.548 kb on - strand, within Echvi_3619at 4295.621 kb on + strand, within Echvi_3619at 4295.665 kb on - strand, within Echvi_3619at 4295.665 kb on - strand, within Echvi_3619at 4295.668 kb on + strand, within Echvi_3619at 4295.668 kb on + strand, within Echvi_3619at 4295.697 kb on - strand, within Echvi_3619at 4295.697 kb on - strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.699 kb on + strand, within Echvi_3619at 4295.700 kb on - strand, within Echvi_3619at 4295.700 kb on - strand, within Echvi_3619at 4295.702 kb on - strand, within Echvi_3619at 4295.779 kb on - strand, within Echvi_3619at 4295.785 kb on - strand, within Echvi_3619at 4295.818 kb on - strand, within Echvi_3619at 4295.818 kb on - strand, within Echvi_3619at 4295.878 kb on + strand, within Echvi_3619at 4295.879 kb on - strand, within Echvi_3619at 4296.028 kb on - strand, within Echvi_3619at 4296.037 kb on - strand, within Echvi_3619at 4296.050 kb on + strand, within Echvi_3619at 4296.050 kb on + strand, within Echvi_3619at 4296.051 kb on - strand, within Echvi_3619at 4296.051 kb on - strand, within Echvi_3619at 4296.051 kb on - strand, within Echvi_3619at 4296.052 kb on + strand, within Echvi_3619at 4296.052 kb on + strand, within Echvi_3619at 4296.053 kb on - strandat 4296.053 kb on - strand, within Echvi_3619at 4296.053 kb on - strand, within Echvi_3619at 4296.053 kb on - strand, within Echvi_3619at 4296.103 kb on - strand, within Echvi_3619at 4296.125 kb on + strand, within Echvi_3619at 4296.126 kb on - strand, within Echvi_3619at 4296.181 kb on - strandat 4296.186 kb on + strandat 4296.186 kb on + strandat 4296.186 kb on + strandat 4296.187 kb on - strandat 4296.240 kb on - strandat 4296.240 kb on - strandat 4296.315 kb on + strandat 4296.315 kb on + strandat 4296.315 kb on + strandat 4296.315 kb on + strandat 4296.316 kb on - strandat 4296.327 kb on + strandat 4296.327 kb on + strandat 4296.328 kb on - strandat 4296.336 kb on + strandat 4296.344 kb on + strandat 4296.345 kb on - strandat 4296.347 kb on + strandat 4296.347 kb on + strandat 4296.347 kb on + strandat 4296.348 kb on - strandat 4296.348 kb on - strandat 4296.348 kb on - strandat 4296.380 kb on + strandat 4296.416 kb on - strandat 4296.500 kb on + strandat 4296.501 kb on - strandat 4296.557 kb on + strandat 4296.715 kb on + strandat 4296.715 kb on + strandat 4296.716 kb on - strandat 4296.717 kb on + strandat 4296.717 kb on + strandat 4296.718 kb on - strandat 4296.728 kb on - strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.785 kb on + strand, within Echvi_3620at 4296.787 kb on + strand, within Echvi_3620at 4296.788 kb on - strand, within Echvi_3620at 4296.788 kb on - strand, within Echvi_3620at 4296.788 kb on - strand, within Echvi_3620at 4296.788 kb on - strand, within Echvi_3620at 4296.820 kb on + strand, within Echvi_3620at 4296.820 kb on + strand, within Echvi_3620at 4296.821 kb on - strand, within Echvi_3620at 4296.882 kb on + strand, within Echvi_3620at 4296.883 kb on - strand, within Echvi_3620at 4296.889 kb on + strand, within Echvi_3620at 4296.889 kb on + strand, within Echvi_3620at 4297.051 kb on + strand, within Echvi_3620at 4297.051 kb on + strand, within Echvi_3620at 4297.051 kb on + strand, within Echvi_3620at 4297.051 kb on + strand, within Echvi_3620at 4297.052 kb on - strand, within Echvi_3620at 4297.052 kb on - strand, within Echvi_3620at 4297.060 kb on + strand, within Echvi_3620at 4297.060 kb on + strand, within Echvi_3620at 4297.119 kb on - strand, within Echvi_3620at 4297.142 kb on - strand, within Echvi_3620at 4297.148 kb on + strand, within Echvi_3620at 4297.149 kb on - strand, within Echvi_3620at 4297.166 kb on + strand, within Echvi_3620at 4297.166 kb on + strand, within Echvi_3620at 4297.167 kb on - strand, within Echvi_3620at 4297.167 kb on - strand, within Echvi_3620at 4297.190 kb on - strand, within Echvi_3620at 4297.259 kb on + strand, within Echvi_3620at 4297.263 kb on + strand, within Echvi_3620at 4297.263 kb on + strand, within Echvi_3620at 4297.263 kb on + strand, within Echvi_3620at 4297.263 kb on + strand, within Echvi_3620at 4297.264 kb on - strand, within Echvi_3620at 4297.264 kb on - strand, within Echvi_3620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
4,294,226 + Echvi_3618 0.48 -0.0
4,294,226 + Echvi_3618 0.48 -0.6
4,294,246 + Echvi_3618 0.49 +0.3
4,294,247 - Echvi_3618 0.49 -0.1
4,294,249 + Echvi_3618 0.49 +2.5
4,294,249 + Echvi_3618 0.49 -0.9
4,294,282 + Echvi_3618 0.51 -0.3
4,294,283 - Echvi_3618 0.51 -0.0
4,294,283 - Echvi_3618 0.51 +1.3
4,294,285 + Echvi_3618 0.52 -0.8
4,294,285 + Echvi_3618 0.52 +0.5
4,294,286 - Echvi_3618 0.52 -0.7
4,294,322 - Echvi_3618 0.54 +1.2
4,294,326 + Echvi_3618 0.54 -0.9
4,294,326 + Echvi_3618 0.54 -1.2
4,294,429 + Echvi_3618 0.61 +0.4
4,294,429 + Echvi_3618 0.61 +0.0
4,294,429 + Echvi_3618 0.61 -0.8
4,294,429 + Echvi_3618 0.61 -0.8
4,294,430 - Echvi_3618 0.61 +0.1
4,294,432 - Echvi_3618 0.61 +0.1
4,294,433 + Echvi_3618 0.61 -0.2
4,294,462 - Echvi_3618 0.63 -1.9
4,294,462 - Echvi_3618 0.63 +0.2
4,294,479 + Echvi_3618 0.64 +0.1
4,294,498 - Echvi_3618 0.65 -0.2
4,294,499 + Echvi_3618 0.65 -1.3
4,294,499 + Echvi_3618 0.65 -0.1
4,294,563 + Echvi_3618 0.69 -0.1
4,294,617 + Echvi_3618 0.73 -0.4
4,294,617 + Echvi_3618 0.73 -0.0
4,294,618 - Echvi_3618 0.73 -0.5
4,294,618 - Echvi_3618 0.73 +0.4
4,294,668 - Echvi_3618 0.76 +0.6
4,294,723 + Echvi_3618 0.79 +0.4
4,294,723 + Echvi_3618 0.79 +0.2
4,294,724 - Echvi_3618 0.79 -0.5
4,294,724 - +1.0
4,294,724 - Echvi_3618 0.79 -0.5
4,294,731 - Echvi_3618 0.80 -0.5
4,294,767 + Echvi_3618 0.82 -0.4
4,294,767 + Echvi_3618 0.82 +0.0
4,294,768 - Echvi_3618 0.82 -0.9
4,294,768 - Echvi_3618 0.82 -0.1
4,294,768 - Echvi_3618 0.82 +0.4
4,294,793 - Echvi_3618 0.84 +0.0
4,295,001 + +0.4
4,295,001 + +0.7
4,295,001 + +0.1
4,295,001 + +0.7
4,295,001 + +0.3
4,295,002 - +0.1
4,295,002 - +0.8
4,295,002 - -1.0
4,295,004 + +0.4
4,295,004 + +0.2
4,295,004 + -1.8
4,295,005 - +0.4
4,295,079 - -0.0
4,295,093 - -0.6
4,295,121 + +0.3
4,295,186 - -0.5
4,295,189 - -0.1
4,295,196 - -0.2
4,295,267 + Echvi_3619 0.11 +0.1
4,295,268 - Echvi_3619 0.11 +0.5
4,295,274 + Echvi_3619 0.12 -1.1
4,295,274 + Echvi_3619 0.12 +0.0
4,295,400 + Echvi_3619 0.23 -0.0
4,295,401 - Echvi_3619 0.23 -1.3
4,295,401 - Echvi_3619 0.23 -0.5
4,295,401 - Echvi_3619 0.23 -0.3
4,295,412 + Echvi_3619 0.24 +0.2
4,295,416 + Echvi_3619 0.24 +1.5
4,295,416 + Echvi_3619 0.24 +0.1
4,295,417 - Echvi_3619 0.24 +0.2
4,295,417 - Echvi_3619 0.24 +0.2
4,295,417 - Echvi_3619 0.24 -2.1
4,295,417 - Echvi_3619 0.24 -0.8
4,295,417 - Echvi_3619 0.24 +1.0
4,295,417 - Echvi_3619 0.24 +0.5
4,295,465 + Echvi_3619 0.28 +0.4
4,295,466 - Echvi_3619 0.28 +0.0
4,295,509 + Echvi_3619 0.32 +2.3
4,295,509 + Echvi_3619 0.32 +0.8
4,295,509 + Echvi_3619 0.32 +0.3
4,295,510 - Echvi_3619 0.32 +2.0
4,295,510 - Echvi_3619 0.32 -1.3
4,295,548 - Echvi_3619 0.36 +0.5
4,295,621 + Echvi_3619 0.42 -0.7
4,295,665 - Echvi_3619 0.46 -1.2
4,295,665 - Echvi_3619 0.46 -0.0
4,295,668 + Echvi_3619 0.46 -0.4
4,295,668 + Echvi_3619 0.46 -0.3
4,295,697 - Echvi_3619 0.48 +1.0
4,295,697 - Echvi_3619 0.48 +0.4
4,295,699 + Echvi_3619 0.49 +0.3
4,295,699 + Echvi_3619 0.49 +0.4
4,295,699 + Echvi_3619 0.49 +0.2
4,295,699 + Echvi_3619 0.49 +0.0
4,295,699 + Echvi_3619 0.49 +0.3
4,295,699 + Echvi_3619 0.49 -0.3
4,295,699 + Echvi_3619 0.49 +0.6
4,295,700 - Echvi_3619 0.49 +1.3
4,295,700 - Echvi_3619 0.49 -0.6
4,295,702 - Echvi_3619 0.49 +0.3
4,295,779 - Echvi_3619 0.56 -0.8
4,295,785 - Echvi_3619 0.56 -0.7
4,295,818 - Echvi_3619 0.59 -0.2
4,295,818 - Echvi_3619 0.59 +0.6
4,295,878 + Echvi_3619 0.64 +0.4
4,295,879 - Echvi_3619 0.64 +0.2
4,296,028 - Echvi_3619 0.77 +0.4
4,296,037 - Echvi_3619 0.78 -0.5
4,296,050 + Echvi_3619 0.79 -1.4
4,296,050 + Echvi_3619 0.79 -0.2
4,296,051 - Echvi_3619 0.79 -0.9
4,296,051 - Echvi_3619 0.79 -0.1
4,296,051 - Echvi_3619 0.79 -0.4
4,296,052 + Echvi_3619 0.79 -0.2
4,296,052 + Echvi_3619 0.79 +1.4
4,296,053 - +0.5
4,296,053 - Echvi_3619 0.79 -0.4
4,296,053 - Echvi_3619 0.79 -0.8
4,296,053 - Echvi_3619 0.79 -0.2
4,296,103 - Echvi_3619 0.84 -0.6
4,296,125 + Echvi_3619 0.86 +0.7
4,296,126 - Echvi_3619 0.86 +0.7
4,296,181 - -0.0
4,296,186 + +0.0
4,296,186 + +0.3
4,296,186 + +0.3
4,296,187 - -0.7
4,296,240 - -1.5
4,296,240 - -0.5
4,296,315 + +0.6
4,296,315 + +0.8
4,296,315 + -1.4
4,296,315 + -2.3
4,296,316 - +0.2
4,296,327 + -0.7
4,296,327 + -0.9
4,296,328 - -1.7
4,296,336 + -1.0
4,296,344 + -0.0
4,296,345 - -0.3
4,296,347 + +0.0
4,296,347 + -1.3
4,296,347 + +0.4
4,296,348 - +0.0
4,296,348 - +0.8
4,296,348 - -0.3
4,296,380 + -0.5
4,296,416 - -1.6
4,296,500 + -0.7
4,296,501 - +0.4
4,296,557 + -0.4
4,296,715 + -1.7
4,296,715 + +0.3
4,296,716 - -0.7
4,296,717 + +0.5
4,296,717 + -0.7
4,296,718 - +0.3
4,296,728 - +1.2
4,296,742 - +0.8
4,296,742 - -0.6
4,296,785 + Echvi_3620 0.10 -0.7
4,296,787 + Echvi_3620 0.10 -0.8
4,296,788 - Echvi_3620 0.10 -0.9
4,296,788 - Echvi_3620 0.10 +0.2
4,296,788 - Echvi_3620 0.10 -1.0
4,296,788 - Echvi_3620 0.10 -0.9
4,296,820 + Echvi_3620 0.11 -0.1
4,296,820 + Echvi_3620 0.11 +0.2
4,296,821 - Echvi_3620 0.11 +0.9
4,296,882 + Echvi_3620 0.12 -1.3
4,296,883 - Echvi_3620 0.12 -0.6
4,296,889 + Echvi_3620 0.13 -0.1
4,296,889 + Echvi_3620 0.13 +0.1
4,297,051 + Echvi_3620 0.16 +0.4
4,297,051 + Echvi_3620 0.16 -0.2
4,297,051 + Echvi_3620 0.16 +0.3
4,297,051 + Echvi_3620 0.16 +0.1
4,297,052 - Echvi_3620 0.16 -1.6
4,297,052 - Echvi_3620 0.16 +0.2
4,297,060 + Echvi_3620 0.16 +0.1
4,297,060 + Echvi_3620 0.16 -0.6
4,297,119 - Echvi_3620 0.18 -0.7
4,297,142 - Echvi_3620 0.18 -0.4
4,297,148 + Echvi_3620 0.18 -0.4
4,297,149 - Echvi_3620 0.19 +0.7
4,297,166 + Echvi_3620 0.19 -0.6
4,297,166 + Echvi_3620 0.19 +0.6
4,297,167 - Echvi_3620 0.19 -1.6
4,297,167 - Echvi_3620 0.19 -0.4
4,297,190 - Echvi_3620 0.19 -0.0
4,297,259 + Echvi_3620 0.21 -0.9
4,297,263 + Echvi_3620 0.21 -0.9
4,297,263 + Echvi_3620 0.21 -0.2
4,297,263 + Echvi_3620 0.21 +0.5
4,297,263 + Echvi_3620 0.21 -1.2
4,297,264 - Echvi_3620 0.21 -0.5
4,297,264 - Echvi_3620 0.21 -0.6

Or see this region's nucleotide sequence