Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2865

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2863 and Echvi_2864 are separated by 130 nucleotidesEchvi_2864 and Echvi_2865 are separated by 225 nucleotidesEchvi_2865 and Echvi_2866 are separated by 78 nucleotidesEchvi_2866 and Echvi_2867 are separated by 204 nucleotides Echvi_2863: Echvi_2863 - 6-phosphogluconolactonase, at 3,434,079 to 3,434,804 _2863 Echvi_2864: Echvi_2864 - Predicted acetyltransferase, at 3,434,935 to 3,435,219 _2864 Echvi_2865: Echvi_2865 - Predicted dehydrogenases and related proteins, at 3,435,445 to 3,436,923 _2865 Echvi_2866: Echvi_2866 - hypothetical protein, at 3,437,002 to 3,437,670 _2866 Echvi_2867: Echvi_2867 - Predicted amidohydrolase, at 3,437,875 to 3,438,570 _2867 Position (kb) 3435 3436 3437Strain fitness (log2 ratio) -2 -1 0 1 2at 3434.891 kb on + strandat 3434.894 kb on - strandat 3434.917 kb on + strandat 3434.939 kb on + strandat 3434.952 kb on + strandat 3435.042 kb on - strand, within Echvi_2864at 3435.062 kb on + strand, within Echvi_2864at 3435.076 kb on - strand, within Echvi_2864at 3435.139 kb on + strand, within Echvi_2864at 3435.142 kb on - strand, within Echvi_2864at 3435.184 kb on - strand, within Echvi_2864at 3435.217 kb on + strandat 3435.218 kb on - strandat 3435.226 kb on + strandat 3435.227 kb on - strandat 3435.227 kb on - strandat 3435.312 kb on - strandat 3435.343 kb on - strandat 3435.350 kb on - strandat 3435.405 kb on + strandat 3435.410 kb on + strandat 3435.417 kb on + strandat 3435.467 kb on + strandat 3435.535 kb on - strandat 3435.535 kb on - strandat 3435.579 kb on + strandat 3435.706 kb on - strand, within Echvi_2865at 3435.843 kb on - strand, within Echvi_2865at 3435.846 kb on + strand, within Echvi_2865at 3435.847 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.886 kb on - strand, within Echvi_2865at 3435.907 kb on + strand, within Echvi_2865at 3435.907 kb on + strand, within Echvi_2865at 3435.908 kb on - strand, within Echvi_2865at 3435.908 kb on - strand, within Echvi_2865at 3435.944 kb on + strand, within Echvi_2865at 3435.944 kb on + strand, within Echvi_2865at 3435.945 kb on - strand, within Echvi_2865at 3435.980 kb on + strand, within Echvi_2865at 3435.980 kb on + strand, within Echvi_2865at 3435.981 kb on - strand, within Echvi_2865at 3435.981 kb on - strand, within Echvi_2865at 3436.022 kb on - strand, within Echvi_2865at 3436.057 kb on - strand, within Echvi_2865at 3436.077 kb on + strand, within Echvi_2865at 3436.078 kb on - strand, within Echvi_2865at 3436.078 kb on - strand, within Echvi_2865at 3436.152 kb on + strand, within Echvi_2865at 3436.153 kb on - strand, within Echvi_2865at 3436.207 kb on + strand, within Echvi_2865at 3436.207 kb on + strand, within Echvi_2865at 3436.209 kb on + strand, within Echvi_2865at 3436.209 kb on + strand, within Echvi_2865at 3436.222 kb on - strand, within Echvi_2865at 3436.224 kb on - strand, within Echvi_2865at 3436.246 kb on + strand, within Echvi_2865at 3436.247 kb on - strand, within Echvi_2865at 3436.287 kb on + strand, within Echvi_2865at 3436.287 kb on + strand, within Echvi_2865at 3436.288 kb on - strand, within Echvi_2865at 3436.330 kb on + strand, within Echvi_2865at 3436.331 kb on - strand, within Echvi_2865at 3436.362 kb on + strand, within Echvi_2865at 3436.363 kb on - strand, within Echvi_2865at 3436.433 kb on + strand, within Echvi_2865at 3436.464 kb on + strand, within Echvi_2865at 3436.467 kb on - strand, within Echvi_2865at 3436.486 kb on + strand, within Echvi_2865at 3436.594 kb on - strand, within Echvi_2865at 3436.615 kb on - strand, within Echvi_2865at 3436.719 kb on + strand, within Echvi_2865at 3436.752 kb on + strand, within Echvi_2865at 3436.805 kb on + strandat 3436.909 kb on + strandat 3436.910 kb on - strandat 3436.913 kb on - strandat 3436.913 kb on - strandat 3436.914 kb on + strandat 3436.914 kb on + strandat 3436.915 kb on - strandat 3436.915 kb on - strandat 3436.924 kb on + strandat 3437.021 kb on + strandat 3437.022 kb on - strandat 3437.164 kb on - strand, within Echvi_2866at 3437.164 kb on - strand, within Echvi_2866at 3437.204 kb on + strand, within Echvi_2866at 3437.205 kb on - strand, within Echvi_2866at 3437.205 kb on - strand, within Echvi_2866at 3437.211 kb on - strand, within Echvi_2866at 3437.269 kb on + strand, within Echvi_2866at 3437.270 kb on - strand, within Echvi_2866at 3437.270 kb on - strand, within Echvi_2866at 3437.310 kb on - strand, within Echvi_2866at 3437.336 kb on + strand, within Echvi_2866at 3437.477 kb on + strand, within Echvi_2866at 3437.525 kb on + strand, within Echvi_2866at 3437.545 kb on - strand, within Echvi_2866at 3437.558 kb on - strand, within Echvi_2866at 3437.618 kb on - strandat 3437.630 kb on - strandat 3437.815 kb on + strandat 3437.816 kb on - strandat 3437.816 kb on - strandat 3437.876 kb on + strandat 3437.907 kb on + strandat 3437.907 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
3,434,891 + -0.1
3,434,894 - -0.2
3,434,917 + -0.0
3,434,939 + +0.2
3,434,952 + -0.8
3,435,042 - Echvi_2864 0.38 -1.5
3,435,062 + Echvi_2864 0.45 +0.8
3,435,076 - Echvi_2864 0.49 +0.0
3,435,139 + Echvi_2864 0.72 -0.1
3,435,142 - Echvi_2864 0.73 -1.2
3,435,184 - Echvi_2864 0.87 -1.0
3,435,217 + -0.0
3,435,218 - +0.5
3,435,226 + +0.4
3,435,227 - +0.1
3,435,227 - +0.4
3,435,312 - -0.7
3,435,343 - +0.7
3,435,350 - -0.1
3,435,405 + +0.0
3,435,410 + +1.0
3,435,417 + -0.2
3,435,467 + -0.3
3,435,535 - -1.9
3,435,535 - -0.0
3,435,579 + -0.3
3,435,706 - Echvi_2865 0.18 -1.2
3,435,843 - Echvi_2865 0.27 +1.0
3,435,846 + Echvi_2865 0.27 +0.4
3,435,847 - Echvi_2865 0.27 -1.0
3,435,886 - Echvi_2865 0.30 -1.1
3,435,886 - Echvi_2865 0.30 +0.2
3,435,886 - Echvi_2865 0.30 +1.4
3,435,886 - Echvi_2865 0.30 -1.3
3,435,886 - Echvi_2865 0.30 +0.7
3,435,886 - Echvi_2865 0.30 -0.3
3,435,907 + Echvi_2865 0.31 +0.4
3,435,907 + Echvi_2865 0.31 +1.7
3,435,908 - Echvi_2865 0.31 -1.3
3,435,908 - Echvi_2865 0.31 +0.1
3,435,944 + Echvi_2865 0.34 +0.1
3,435,944 + Echvi_2865 0.34 +0.4
3,435,945 - Echvi_2865 0.34 +0.3
3,435,980 + Echvi_2865 0.36 +0.7
3,435,980 + Echvi_2865 0.36 -0.7
3,435,981 - Echvi_2865 0.36 -0.6
3,435,981 - Echvi_2865 0.36 -0.6
3,436,022 - Echvi_2865 0.39 -0.7
3,436,057 - Echvi_2865 0.41 +0.0
3,436,077 + Echvi_2865 0.43 -0.1
3,436,078 - Echvi_2865 0.43 +1.1
3,436,078 - Echvi_2865 0.43 +0.6
3,436,152 + Echvi_2865 0.48 -0.4
3,436,153 - Echvi_2865 0.48 -0.6
3,436,207 + Echvi_2865 0.52 +0.3
3,436,207 + Echvi_2865 0.52 +1.0
3,436,209 + Echvi_2865 0.52 +0.1
3,436,209 + Echvi_2865 0.52 +1.4
3,436,222 - Echvi_2865 0.53 +0.0
3,436,224 - Echvi_2865 0.53 +0.7
3,436,246 + Echvi_2865 0.54 +1.6
3,436,247 - Echvi_2865 0.54 +0.4
3,436,287 + Echvi_2865 0.57 -0.2
3,436,287 + Echvi_2865 0.57 -0.2
3,436,288 - Echvi_2865 0.57 -0.2
3,436,330 + Echvi_2865 0.60 +0.4
3,436,331 - Echvi_2865 0.60 -1.0
3,436,362 + Echvi_2865 0.62 +0.6
3,436,363 - Echvi_2865 0.62 -0.4
3,436,433 + Echvi_2865 0.67 -0.3
3,436,464 + Echvi_2865 0.69 +0.4
3,436,467 - Echvi_2865 0.69 +2.1
3,436,486 + Echvi_2865 0.70 -0.1
3,436,594 - Echvi_2865 0.78 -0.3
3,436,615 - Echvi_2865 0.79 +0.1
3,436,719 + Echvi_2865 0.86 +0.1
3,436,752 + Echvi_2865 0.88 +0.7
3,436,805 + -1.0
3,436,909 + +0.4
3,436,910 - -0.2
3,436,913 - +0.8
3,436,913 - -0.4
3,436,914 + +0.1
3,436,914 + -0.3
3,436,915 - -0.6
3,436,915 - +0.0
3,436,924 + -0.1
3,437,021 + -0.5
3,437,022 - +0.4
3,437,164 - Echvi_2866 0.24 -0.0
3,437,164 - Echvi_2866 0.24 +0.9
3,437,204 + Echvi_2866 0.30 -0.2
3,437,205 - Echvi_2866 0.30 +1.0
3,437,205 - Echvi_2866 0.30 +1.9
3,437,211 - Echvi_2866 0.31 +0.1
3,437,269 + Echvi_2866 0.40 -0.2
3,437,270 - Echvi_2866 0.40 +1.2
3,437,270 - Echvi_2866 0.40 -0.5
3,437,310 - Echvi_2866 0.46 -0.1
3,437,336 + Echvi_2866 0.50 -1.3
3,437,477 + Echvi_2866 0.71 -0.7
3,437,525 + Echvi_2866 0.78 -0.9
3,437,545 - Echvi_2866 0.81 -0.3
3,437,558 - Echvi_2866 0.83 -1.2
3,437,618 - -1.3
3,437,630 - +0.9
3,437,815 + -0.4
3,437,816 - -0.2
3,437,816 - +1.1
3,437,876 + +0.1
3,437,907 + -0.3
3,437,907 + -0.4

Or see this region's nucleotide sequence