Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2782

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2781 and Echvi_2782 are separated by 62 nucleotidesEchvi_2782 and Echvi_2783 are separated by 264 nucleotides Echvi_2781: Echvi_2781 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 3,322,132 to 3,325,260 _2781 Echvi_2782: Echvi_2782 - RND family efflux transporter, MFP subunit, at 3,325,323 to 3,326,477 _2782 Echvi_2783: Echvi_2783 - signal peptide peptidase SppA, 67K type, at 3,326,742 to 3,328,499 _2783 Position (kb) 3325 3326 3327Strain fitness (log2 ratio) -2 -1 0 1 2at 3324.323 kb on + strand, within Echvi_2781at 3324.323 kb on + strand, within Echvi_2781at 3324.324 kb on - strand, within Echvi_2781at 3324.328 kb on + strand, within Echvi_2781at 3324.328 kb on + strand, within Echvi_2781at 3324.328 kb on + strand, within Echvi_2781at 3324.329 kb on - strand, within Echvi_2781at 3324.329 kb on - strand, within Echvi_2781at 3324.462 kb on + strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.463 kb on - strand, within Echvi_2781at 3324.490 kb on + strand, within Echvi_2781at 3324.490 kb on + strand, within Echvi_2781at 3324.499 kb on + strand, within Echvi_2781at 3324.499 kb on + strand, within Echvi_2781at 3324.499 kb on + strand, within Echvi_2781at 3324.500 kb on - strand, within Echvi_2781at 3324.519 kb on + strand, within Echvi_2781at 3324.532 kb on - strand, within Echvi_2781at 3324.674 kb on - strand, within Echvi_2781at 3324.686 kb on - strand, within Echvi_2781at 3324.686 kb on - strand, within Echvi_2781at 3324.697 kb on - strand, within Echvi_2781at 3324.707 kb on + strand, within Echvi_2781at 3324.749 kb on + strand, within Echvi_2781at 3324.760 kb on - strand, within Echvi_2781at 3324.800 kb on - strand, within Echvi_2781at 3324.837 kb on + strand, within Echvi_2781at 3324.837 kb on + strand, within Echvi_2781at 3324.837 kb on + strand, within Echvi_2781at 3324.837 kb on + strand, within Echvi_2781at 3324.852 kb on + strand, within Echvi_2781at 3324.953 kb on - strandat 3324.961 kb on - strandat 3325.021 kb on + strandat 3325.039 kb on - strandat 3325.067 kb on + strandat 3325.068 kb on - strandat 3325.068 kb on - strandat 3325.140 kb on + strandat 3325.196 kb on - strandat 3325.235 kb on - strandat 3325.253 kb on - strandat 3325.286 kb on - strandat 3325.324 kb on + strandat 3325.325 kb on - strandat 3325.325 kb on - strandat 3325.325 kb on - strandat 3325.357 kb on - strandat 3325.423 kb on + strandat 3325.433 kb on + strandat 3325.434 kb on - strandat 3325.434 kb on - strandat 3325.465 kb on + strand, within Echvi_2782at 3325.465 kb on + strand, within Echvi_2782at 3325.465 kb on + strand, within Echvi_2782at 3325.465 kb on + strand, within Echvi_2782at 3325.465 kb on + strand, within Echvi_2782at 3325.465 kb on + strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.466 kb on - strand, within Echvi_2782at 3325.493 kb on + strand, within Echvi_2782at 3325.540 kb on + strand, within Echvi_2782at 3325.597 kb on - strand, within Echvi_2782at 3325.614 kb on + strand, within Echvi_2782at 3325.620 kb on - strand, within Echvi_2782at 3325.620 kb on - strand, within Echvi_2782at 3325.733 kb on - strand, within Echvi_2782at 3325.770 kb on + strand, within Echvi_2782at 3325.771 kb on - strand, within Echvi_2782at 3325.771 kb on - strand, within Echvi_2782at 3325.771 kb on - strand, within Echvi_2782at 3325.772 kb on + strand, within Echvi_2782at 3325.773 kb on - strand, within Echvi_2782at 3325.773 kb on - strand, within Echvi_2782at 3325.804 kb on + strand, within Echvi_2782at 3325.804 kb on + strand, within Echvi_2782at 3325.805 kb on - strand, within Echvi_2782at 3325.813 kb on + strand, within Echvi_2782at 3325.814 kb on - strand, within Echvi_2782at 3325.814 kb on - strand, within Echvi_2782at 3325.827 kb on + strand, within Echvi_2782at 3325.827 kb on + strand, within Echvi_2782at 3325.827 kb on + strand, within Echvi_2782at 3325.832 kb on + strand, within Echvi_2782at 3325.837 kb on + strand, within Echvi_2782at 3325.837 kb on + strand, within Echvi_2782at 3325.838 kb on - strand, within Echvi_2782at 3325.838 kb on - strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.845 kb on + strand, within Echvi_2782at 3325.846 kb on - strand, within Echvi_2782at 3325.846 kb on - strand, within Echvi_2782at 3325.898 kb on + strand, within Echvi_2782at 3325.902 kb on + strand, within Echvi_2782at 3325.902 kb on + strand, within Echvi_2782at 3325.902 kb on + strand, within Echvi_2782at 3325.903 kb on - strand, within Echvi_2782at 3325.907 kb on + strand, within Echvi_2782at 3325.907 kb on + strand, within Echvi_2782at 3325.915 kb on - strand, within Echvi_2782at 3325.919 kb on + strand, within Echvi_2782at 3325.923 kb on + strand, within Echvi_2782at 3325.923 kb on + strand, within Echvi_2782at 3325.924 kb on - strand, within Echvi_2782at 3325.924 kb on - strand, within Echvi_2782at 3325.927 kb on - strand, within Echvi_2782at 3325.985 kb on - strand, within Echvi_2782at 3326.047 kb on - strand, within Echvi_2782at 3326.072 kb on + strand, within Echvi_2782at 3326.093 kb on + strand, within Echvi_2782at 3326.093 kb on + strand, within Echvi_2782at 3326.093 kb on + strand, within Echvi_2782at 3326.094 kb on - strand, within Echvi_2782at 3326.094 kb on - strand, within Echvi_2782at 3326.097 kb on + strand, within Echvi_2782at 3326.098 kb on - strand, within Echvi_2782at 3326.104 kb on + strand, within Echvi_2782at 3326.218 kb on + strand, within Echvi_2782at 3326.219 kb on - strand, within Echvi_2782at 3326.223 kb on - strand, within Echvi_2782at 3326.223 kb on - strand, within Echvi_2782at 3326.238 kb on + strand, within Echvi_2782at 3326.304 kb on + strand, within Echvi_2782at 3326.305 kb on - strand, within Echvi_2782at 3326.308 kb on + strand, within Echvi_2782at 3326.309 kb on - strand, within Echvi_2782at 3326.309 kb on - strand, within Echvi_2782at 3326.309 kb on - strand, within Echvi_2782at 3326.340 kb on + strand, within Echvi_2782at 3326.340 kb on + strand, within Echvi_2782at 3326.341 kb on - strand, within Echvi_2782at 3326.414 kb on - strandat 3326.436 kb on + strandat 3326.437 kb on - strandat 3326.437 kb on - strandat 3326.485 kb on + strandat 3326.505 kb on - strandat 3326.517 kb on - strandat 3326.644 kb on + strandat 3326.645 kb on - strandat 3326.851 kb on + strandat 3327.183 kb on - strand, within Echvi_2783at 3327.335 kb on + strand, within Echvi_2783at 3327.337 kb on + strand, within Echvi_2783at 3327.337 kb on + strand, within Echvi_2783at 3327.337 kb on + strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.338 kb on - strand, within Echvi_2783at 3327.340 kb on + strand, within Echvi_2783at 3327.340 kb on + strand, within Echvi_2783at 3327.341 kb on - strand, within Echvi_2783at 3327.341 kb on - strand, within Echvi_2783

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,324,323 + Echvi_2781 0.70 +0.9
3,324,323 + Echvi_2781 0.70 -0.3
3,324,324 - Echvi_2781 0.70 -1.4
3,324,328 + Echvi_2781 0.70 +0.3
3,324,328 + Echvi_2781 0.70 +0.4
3,324,328 + Echvi_2781 0.70 +0.2
3,324,329 - Echvi_2781 0.70 -0.9
3,324,329 - Echvi_2781 0.70 +0.0
3,324,462 + Echvi_2781 0.74 +0.3
3,324,463 - Echvi_2781 0.74 -0.3
3,324,463 - Echvi_2781 0.74 -0.8
3,324,463 - Echvi_2781 0.74 +0.4
3,324,463 - Echvi_2781 0.74 -0.4
3,324,463 - Echvi_2781 0.74 +0.2
3,324,463 - Echvi_2781 0.74 -0.1
3,324,463 - Echvi_2781 0.74 -0.1
3,324,490 + Echvi_2781 0.75 -0.3
3,324,490 + Echvi_2781 0.75 -1.0
3,324,499 + Echvi_2781 0.76 +0.9
3,324,499 + Echvi_2781 0.76 -0.1
3,324,499 + Echvi_2781 0.76 -1.6
3,324,500 - Echvi_2781 0.76 +0.6
3,324,519 + Echvi_2781 0.76 +0.1
3,324,532 - Echvi_2781 0.77 -1.1
3,324,674 - Echvi_2781 0.81 +0.1
3,324,686 - Echvi_2781 0.82 +0.5
3,324,686 - Echvi_2781 0.82 -0.4
3,324,697 - Echvi_2781 0.82 -0.5
3,324,707 + Echvi_2781 0.82 -0.6
3,324,749 + Echvi_2781 0.84 +0.3
3,324,760 - Echvi_2781 0.84 +0.1
3,324,800 - Echvi_2781 0.85 +1.2
3,324,837 + Echvi_2781 0.86 +0.2
3,324,837 + Echvi_2781 0.86 -0.8
3,324,837 + Echvi_2781 0.86 +0.0
3,324,837 + Echvi_2781 0.86 +1.3
3,324,852 + Echvi_2781 0.87 +0.7
3,324,953 - +1.2
3,324,961 - +0.1
3,325,021 + -0.1
3,325,039 - -0.3
3,325,067 + -0.2
3,325,068 - +2.5
3,325,068 - -0.2
3,325,140 + +0.0
3,325,196 - +0.9
3,325,235 - -0.3
3,325,253 - +1.2
3,325,286 - -0.3
3,325,324 + +1.2
3,325,325 - -0.2
3,325,325 - +0.1
3,325,325 - +0.3
3,325,357 - +0.1
3,325,423 + +1.2
3,325,433 + -0.3
3,325,434 - -0.2
3,325,434 - -0.8
3,325,465 + Echvi_2782 0.12 -0.9
3,325,465 + Echvi_2782 0.12 -0.8
3,325,465 + Echvi_2782 0.12 +1.1
3,325,465 + Echvi_2782 0.12 -0.1
3,325,465 + Echvi_2782 0.12 -0.8
3,325,465 + Echvi_2782 0.12 -0.2
3,325,466 - Echvi_2782 0.12 +0.3
3,325,466 - Echvi_2782 0.12 +0.1
3,325,466 - Echvi_2782 0.12 -0.1
3,325,466 - Echvi_2782 0.12 +0.1
3,325,466 - Echvi_2782 0.12 +0.9
3,325,466 - Echvi_2782 0.12 -0.3
3,325,466 - Echvi_2782 0.12 -1.0
3,325,466 - Echvi_2782 0.12 -0.1
3,325,466 - Echvi_2782 0.12 +0.8
3,325,493 + Echvi_2782 0.15 +1.0
3,325,540 + Echvi_2782 0.19 -1.0
3,325,597 - Echvi_2782 0.24 -0.4
3,325,614 + Echvi_2782 0.25 -0.3
3,325,620 - Echvi_2782 0.26 +0.6
3,325,620 - Echvi_2782 0.26 +0.9
3,325,733 - Echvi_2782 0.35 +2.5
3,325,770 + Echvi_2782 0.39 +0.3
3,325,771 - Echvi_2782 0.39 -0.1
3,325,771 - Echvi_2782 0.39 +1.2
3,325,771 - Echvi_2782 0.39 +0.0
3,325,772 + Echvi_2782 0.39 +0.7
3,325,773 - Echvi_2782 0.39 -1.2
3,325,773 - Echvi_2782 0.39 +0.6
3,325,804 + Echvi_2782 0.42 -1.0
3,325,804 + Echvi_2782 0.42 +0.0
3,325,805 - Echvi_2782 0.42 +0.2
3,325,813 + Echvi_2782 0.42 +0.8
3,325,814 - Echvi_2782 0.43 -0.2
3,325,814 - Echvi_2782 0.43 +0.3
3,325,827 + Echvi_2782 0.44 -0.2
3,325,827 + Echvi_2782 0.44 +0.5
3,325,827 + Echvi_2782 0.44 -0.4
3,325,832 + Echvi_2782 0.44 -0.8
3,325,837 + Echvi_2782 0.45 +0.3
3,325,837 + Echvi_2782 0.45 -0.4
3,325,838 - Echvi_2782 0.45 -0.9
3,325,838 - Echvi_2782 0.45 -0.3
3,325,845 + Echvi_2782 0.45 +0.5
3,325,845 + Echvi_2782 0.45 -0.6
3,325,845 + Echvi_2782 0.45 +0.0
3,325,845 + Echvi_2782 0.45 +0.5
3,325,845 + Echvi_2782 0.45 +0.0
3,325,845 + Echvi_2782 0.45 +0.3
3,325,845 + Echvi_2782 0.45 -0.6
3,325,845 + Echvi_2782 0.45 -0.6
3,325,846 - Echvi_2782 0.45 -0.4
3,325,846 - Echvi_2782 0.45 +1.2
3,325,898 + Echvi_2782 0.50 +0.5
3,325,902 + Echvi_2782 0.50 +0.3
3,325,902 + Echvi_2782 0.50 +0.1
3,325,902 + Echvi_2782 0.50 +0.5
3,325,903 - Echvi_2782 0.50 -1.3
3,325,907 + Echvi_2782 0.51 +0.3
3,325,907 + Echvi_2782 0.51 +0.1
3,325,915 - Echvi_2782 0.51 -0.6
3,325,919 + Echvi_2782 0.52 -1.0
3,325,923 + Echvi_2782 0.52 +0.0
3,325,923 + Echvi_2782 0.52 +0.5
3,325,924 - Echvi_2782 0.52 -1.2
3,325,924 - Echvi_2782 0.52 +1.2
3,325,927 - Echvi_2782 0.52 +0.7
3,325,985 - Echvi_2782 0.57 +0.7
3,326,047 - Echvi_2782 0.63 +0.0
3,326,072 + Echvi_2782 0.65 -1.5
3,326,093 + Echvi_2782 0.67 +0.8
3,326,093 + Echvi_2782 0.67 -1.6
3,326,093 + Echvi_2782 0.67 +0.7
3,326,094 - Echvi_2782 0.67 -0.9
3,326,094 - Echvi_2782 0.67 +0.1
3,326,097 + Echvi_2782 0.67 +0.8
3,326,098 - Echvi_2782 0.67 -1.8
3,326,104 + Echvi_2782 0.68 -0.0
3,326,218 + Echvi_2782 0.77 -0.4
3,326,219 - Echvi_2782 0.78 +0.4
3,326,223 - Echvi_2782 0.78 -0.5
3,326,223 - Echvi_2782 0.78 -1.1
3,326,238 + Echvi_2782 0.79 -1.1
3,326,304 + Echvi_2782 0.85 +0.3
3,326,305 - Echvi_2782 0.85 -0.3
3,326,308 + Echvi_2782 0.85 -0.8
3,326,309 - Echvi_2782 0.85 +0.2
3,326,309 - Echvi_2782 0.85 -0.6
3,326,309 - Echvi_2782 0.85 -0.2
3,326,340 + Echvi_2782 0.88 -0.2
3,326,340 + Echvi_2782 0.88 -1.9
3,326,341 - Echvi_2782 0.88 +0.4
3,326,414 - +0.2
3,326,436 + +0.4
3,326,437 - -1.1
3,326,437 - -0.7
3,326,485 + -0.4
3,326,505 - +0.6
3,326,517 - -0.7
3,326,644 + -0.4
3,326,645 - -0.7
3,326,851 + +1.1
3,327,183 - Echvi_2783 0.25 -0.3
3,327,335 + Echvi_2783 0.34 +1.2
3,327,337 + Echvi_2783 0.34 +1.0
3,327,337 + Echvi_2783 0.34 +0.5
3,327,337 + Echvi_2783 0.34 -0.3
3,327,338 - Echvi_2783 0.34 -0.0
3,327,338 - Echvi_2783 0.34 -2.2
3,327,338 - Echvi_2783 0.34 +0.6
3,327,338 - Echvi_2783 0.34 -1.0
3,327,338 - Echvi_2783 0.34 -0.6
3,327,338 - Echvi_2783 0.34 -1.4
3,327,340 + Echvi_2783 0.34 -0.3
3,327,340 + Echvi_2783 0.34 +0.7
3,327,341 - Echvi_2783 0.34 +0.9
3,327,341 - Echvi_2783 0.34 +2.1

Or see this region's nucleotide sequence