Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2436

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2435 and Echvi_2436 overlap by 4 nucleotidesEchvi_2436 and Echvi_2437 are separated by 32 nucleotides Echvi_2435: Echvi_2435 - Putative silver efflux pump, at 2,886,041 to 2,889,835 _2435 Echvi_2436: Echvi_2436 - Outer membrane protein, at 2,889,832 to 2,891,163 _2436 Echvi_2437: Echvi_2437 - RND family efflux transporter, MFP subunit, at 2,891,196 to 2,892,923 _2437 Position (kb) 2889 2890 2891 2892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2888.866 kb on + strand, within Echvi_2435at 2888.867 kb on - strand, within Echvi_2435at 2888.867 kb on - strand, within Echvi_2435at 2888.889 kb on - strand, within Echvi_2435at 2888.889 kb on - strand, within Echvi_2435at 2888.907 kb on - strand, within Echvi_2435at 2888.941 kb on - strand, within Echvi_2435at 2888.941 kb on - strand, within Echvi_2435at 2888.960 kb on - strand, within Echvi_2435at 2888.980 kb on - strand, within Echvi_2435at 2889.060 kb on - strand, within Echvi_2435at 2889.123 kb on - strand, within Echvi_2435at 2889.243 kb on + strand, within Echvi_2435at 2889.361 kb on - strand, within Echvi_2435at 2889.516 kb on - strandat 2889.643 kb on - strandat 2889.661 kb on + strandat 2889.786 kb on + strandat 2889.831 kb on + strandat 2889.831 kb on + strandat 2889.845 kb on + strandat 2889.846 kb on - strandat 2889.849 kb on + strandat 2889.952 kb on + strandat 2889.957 kb on - strandat 2890.157 kb on + strand, within Echvi_2436at 2890.157 kb on + strand, within Echvi_2436at 2890.158 kb on - strand, within Echvi_2436at 2890.158 kb on - strand, within Echvi_2436at 2890.185 kb on - strand, within Echvi_2436at 2890.238 kb on - strand, within Echvi_2436at 2890.255 kb on + strand, within Echvi_2436at 2890.255 kb on + strand, within Echvi_2436at 2890.255 kb on + strand, within Echvi_2436at 2890.258 kb on + strandat 2890.267 kb on + strand, within Echvi_2436at 2890.268 kb on - strand, within Echvi_2436at 2890.391 kb on + strand, within Echvi_2436at 2890.392 kb on - strand, within Echvi_2436at 2890.392 kb on - strand, within Echvi_2436at 2890.442 kb on + strand, within Echvi_2436at 2890.492 kb on - strand, within Echvi_2436at 2890.504 kb on - strand, within Echvi_2436at 2890.568 kb on + strand, within Echvi_2436at 2890.568 kb on + strand, within Echvi_2436at 2890.569 kb on - strand, within Echvi_2436at 2890.689 kb on + strand, within Echvi_2436at 2890.690 kb on - strand, within Echvi_2436at 2890.693 kb on + strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.694 kb on - strand, within Echvi_2436at 2890.695 kb on + strand, within Echvi_2436at 2890.696 kb on - strand, within Echvi_2436at 2890.774 kb on - strand, within Echvi_2436at 2890.774 kb on - strand, within Echvi_2436at 2890.823 kb on - strand, within Echvi_2436at 2890.823 kb on - strand, within Echvi_2436at 2890.852 kb on + strand, within Echvi_2436at 2890.853 kb on - strand, within Echvi_2436at 2890.853 kb on - strand, within Echvi_2436at 2890.853 kb on - strand, within Echvi_2436at 2890.898 kb on + strand, within Echvi_2436at 2890.899 kb on - strand, within Echvi_2436at 2890.899 kb on - strand, within Echvi_2436at 2890.899 kb on - strand, within Echvi_2436at 2890.899 kb on - strand, within Echvi_2436at 2890.922 kb on - strand, within Echvi_2436at 2890.960 kb on + strand, within Echvi_2436at 2890.979 kb on + strand, within Echvi_2436at 2891.155 kb on - strandat 2891.160 kb on - strandat 2891.186 kb on - strandat 2891.186 kb on - strandat 2891.189 kb on + strandat 2891.189 kb on + strandat 2891.189 kb on + strandat 2891.190 kb on - strandat 2891.190 kb on - strandat 2891.190 kb on - strandat 2891.190 kb on - strandat 2891.191 kb on + strandat 2891.191 kb on + strandat 2891.191 kb on + strandat 2891.192 kb on - strandat 2891.305 kb on - strandat 2891.419 kb on - strand, within Echvi_2437at 2891.419 kb on - strand, within Echvi_2437at 2891.419 kb on - strand, within Echvi_2437at 2891.472 kb on - strand, within Echvi_2437at 2891.581 kb on + strand, within Echvi_2437at 2891.582 kb on - strand, within Echvi_2437at 2891.590 kb on + strand, within Echvi_2437at 2891.590 kb on + strand, within Echvi_2437at 2891.590 kb on + strand, within Echvi_2437at 2891.593 kb on - strand, within Echvi_2437at 2891.593 kb on - strand, within Echvi_2437at 2891.593 kb on - strand, within Echvi_2437at 2891.644 kb on + strand, within Echvi_2437at 2891.644 kb on + strand, within Echvi_2437at 2891.645 kb on - strand, within Echvi_2437at 2891.645 kb on - strand, within Echvi_2437at 2891.646 kb on + strand, within Echvi_2437at 2891.647 kb on - strand, within Echvi_2437at 2891.660 kb on - strand, within Echvi_2437at 2891.660 kb on - strand, within Echvi_2437at 2891.744 kb on - strand, within Echvi_2437at 2891.799 kb on + strand, within Echvi_2437at 2891.816 kb on + strand, within Echvi_2437at 2891.821 kb on - strand, within Echvi_2437at 2891.871 kb on + strand, within Echvi_2437at 2891.872 kb on - strand, within Echvi_2437at 2891.872 kb on - strand, within Echvi_2437

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,888,866 + Echvi_2435 0.74 -0.8
2,888,867 - Echvi_2435 0.74 +0.7
2,888,867 - Echvi_2435 0.74 +0.3
2,888,889 - Echvi_2435 0.75 -0.2
2,888,889 - Echvi_2435 0.75 +0.2
2,888,907 - Echvi_2435 0.76 +0.8
2,888,941 - Echvi_2435 0.76 -0.4
2,888,941 - Echvi_2435 0.76 -0.6
2,888,960 - Echvi_2435 0.77 -0.2
2,888,980 - Echvi_2435 0.77 -0.3
2,889,060 - Echvi_2435 0.80 +0.1
2,889,123 - Echvi_2435 0.81 +1.1
2,889,243 + Echvi_2435 0.84 -0.3
2,889,361 - Echvi_2435 0.87 -1.6
2,889,516 - -0.3
2,889,643 - -0.0
2,889,661 + -0.4
2,889,786 + -0.1
2,889,831 + +1.4
2,889,831 + -0.9
2,889,845 + +1.1
2,889,846 - +1.7
2,889,849 + -2.3
2,889,952 + -0.0
2,889,957 - +0.6
2,890,157 + Echvi_2436 0.24 -1.9
2,890,157 + Echvi_2436 0.24 -1.8
2,890,158 - Echvi_2436 0.24 +0.0
2,890,158 - Echvi_2436 0.24 +0.0
2,890,185 - Echvi_2436 0.27 +0.0
2,890,238 - Echvi_2436 0.30 -0.1
2,890,255 + Echvi_2436 0.32 -0.8
2,890,255 + Echvi_2436 0.32 -0.6
2,890,255 + Echvi_2436 0.32 -1.0
2,890,258 + +1.0
2,890,267 + Echvi_2436 0.33 +2.3
2,890,268 - Echvi_2436 0.33 -0.3
2,890,391 + Echvi_2436 0.42 +0.2
2,890,392 - Echvi_2436 0.42 -0.4
2,890,392 - Echvi_2436 0.42 -0.3
2,890,442 + Echvi_2436 0.46 -3.0
2,890,492 - Echvi_2436 0.50 +0.5
2,890,504 - Echvi_2436 0.50 +0.2
2,890,568 + Echvi_2436 0.55 -0.4
2,890,568 + Echvi_2436 0.55 -1.0
2,890,569 - Echvi_2436 0.55 +0.4
2,890,689 + Echvi_2436 0.64 -2.5
2,890,690 - Echvi_2436 0.64 +1.2
2,890,693 + Echvi_2436 0.65 -1.8
2,890,694 - Echvi_2436 0.65 -1.0
2,890,694 - Echvi_2436 0.65 -1.0
2,890,694 - Echvi_2436 0.65 +0.5
2,890,694 - Echvi_2436 0.65 -0.1
2,890,694 - Echvi_2436 0.65 +0.4
2,890,694 - Echvi_2436 0.65 -0.4
2,890,694 - Echvi_2436 0.65 +1.0
2,890,695 + Echvi_2436 0.65 +1.0
2,890,696 - Echvi_2436 0.65 -0.5
2,890,774 - Echvi_2436 0.71 -0.5
2,890,774 - Echvi_2436 0.71 -1.3
2,890,823 - Echvi_2436 0.74 +0.3
2,890,823 - Echvi_2436 0.74 +1.1
2,890,852 + Echvi_2436 0.77 -2.0
2,890,853 - Echvi_2436 0.77 +0.1
2,890,853 - Echvi_2436 0.77 +0.5
2,890,853 - Echvi_2436 0.77 -0.2
2,890,898 + Echvi_2436 0.80 +0.7
2,890,899 - Echvi_2436 0.80 +0.1
2,890,899 - Echvi_2436 0.80 +0.0
2,890,899 - Echvi_2436 0.80 -0.4
2,890,899 - Echvi_2436 0.80 -0.2
2,890,922 - Echvi_2436 0.82 +0.2
2,890,960 + Echvi_2436 0.85 -1.2
2,890,979 + Echvi_2436 0.86 -2.4
2,891,155 - +0.2
2,891,160 - +0.6
2,891,186 - -0.1
2,891,186 - -0.2
2,891,189 + -2.6
2,891,189 + -0.7
2,891,189 + +0.3
2,891,190 - +0.1
2,891,190 - +0.9
2,891,190 - +0.8
2,891,190 - +0.7
2,891,191 + +1.0
2,891,191 + -1.0
2,891,191 + -1.4
2,891,192 - +1.7
2,891,305 - +0.2
2,891,419 - Echvi_2437 0.13 +0.2
2,891,419 - Echvi_2437 0.13 +0.1
2,891,419 - Echvi_2437 0.13 -0.6
2,891,472 - Echvi_2437 0.16 -0.2
2,891,581 + Echvi_2437 0.22 -0.4
2,891,582 - Echvi_2437 0.22 +1.0
2,891,590 + Echvi_2437 0.23 +0.6
2,891,590 + Echvi_2437 0.23 -1.5
2,891,590 + Echvi_2437 0.23 -2.1
2,891,593 - Echvi_2437 0.23 +0.4
2,891,593 - Echvi_2437 0.23 -0.3
2,891,593 - Echvi_2437 0.23 -1.1
2,891,644 + Echvi_2437 0.26 -0.6
2,891,644 + Echvi_2437 0.26 -1.0
2,891,645 - Echvi_2437 0.26 -0.8
2,891,645 - Echvi_2437 0.26 -1.5
2,891,646 + Echvi_2437 0.26 -0.6
2,891,647 - Echvi_2437 0.26 -0.0
2,891,660 - Echvi_2437 0.27 -0.8
2,891,660 - Echvi_2437 0.27 -0.9
2,891,744 - Echvi_2437 0.32 +0.2
2,891,799 + Echvi_2437 0.35 +0.6
2,891,816 + Echvi_2437 0.36 -0.5
2,891,821 - Echvi_2437 0.36 -0.2
2,891,871 + Echvi_2437 0.39 -0.9
2,891,872 - Echvi_2437 0.39 +0.4
2,891,872 - Echvi_2437 0.39 +0.5

Or see this region's nucleotide sequence