Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4387

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4386 and EX28DRAFT_4387 overlap by 4 nucleotidesEX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotidesEX28DRAFT_4388 and EX28DRAFT_4389 are separated by 152 nucleotides EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468 _4386 EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163 _4387 EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820 _4388 EX28DRAFT_4389: EX28DRAFT_4389 - cation diffusion facilitator family transporter, at 51,973 to 52,866 _4389 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1at 50.275 kb on - strand, within EX28DRAFT_4386at 50.398 kb on - strandat 50.667 kb on + strand, within EX28DRAFT_4387at 50.667 kb on + strand, within EX28DRAFT_4387at 50.668 kb on - strand, within EX28DRAFT_4387at 50.767 kb on + strand, within EX28DRAFT_4387at 50.768 kb on - strand, within EX28DRAFT_4387at 50.980 kb on + strand, within EX28DRAFT_4387at 50.981 kb on - strand, within EX28DRAFT_4387at 51.157 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.169 kb on - strandat 51.209 kb on - strandat 51.222 kb on - strandat 51.231 kb on + strandat 51.231 kb on + strandat 51.232 kb on - strandat 51.265 kb on + strandat 51.265 kb on + strandat 51.266 kb on - strandat 51.385 kb on + strand, within EX28DRAFT_4388at 51.408 kb on + strand, within EX28DRAFT_4388at 51.409 kb on - strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.460 kb on - strand, within EX28DRAFT_4388at 51.645 kb on + strand, within EX28DRAFT_4388at 51.645 kb on + strand, within EX28DRAFT_4388at 51.646 kb on - strand, within EX28DRAFT_4388at 51.797 kb on - strandat 51.808 kb on + strandat 51.839 kb on + strandat 51.839 kb on + strandat 51.921 kb on + strandat 51.921 kb on + strandat 51.943 kb on + strandat 51.944 kb on - strandat 51.944 kb on - strandat 51.944 kb on - strandat 51.946 kb on + strandat 51.947 kb on - strandat 51.972 kb on + strandat 51.986 kb on - strandat 52.069 kb on + strand, within EX28DRAFT_4389at 52.087 kb on - strand, within EX28DRAFT_4389

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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50,275 - EX28DRAFT_4386 0.86 +0.3
50,398 - +0.6
50,667 + EX28DRAFT_4387 0.29 -0.8
50,667 + EX28DRAFT_4387 0.29 -0.7
50,668 - EX28DRAFT_4387 0.29 -0.6
50,767 + EX28DRAFT_4387 0.43 -1.4
50,768 - EX28DRAFT_4387 0.43 +0.3
50,980 + EX28DRAFT_4387 0.74 -1.2
50,981 - EX28DRAFT_4387 0.74 -1.7
51,157 + -0.4
51,168 + -0.4
51,168 + +0.1
51,168 + -0.3
51,169 - -0.3
51,209 - +0.2
51,222 - +0.2
51,231 + -0.1
51,231 + -0.2
51,232 - -0.1
51,265 + +0.0
51,265 + +1.0
51,266 - +0.5
51,385 + EX28DRAFT_4388 0.14 -0.1
51,408 + EX28DRAFT_4388 0.19 +0.0
51,409 - EX28DRAFT_4388 0.19 -0.1
51,445 + EX28DRAFT_4388 0.26 +0.0
51,445 + EX28DRAFT_4388 0.26 +0.2
51,446 - EX28DRAFT_4388 0.26 +0.1
51,446 - EX28DRAFT_4388 0.26 -0.1
51,460 - EX28DRAFT_4388 0.29 +1.4
51,645 + EX28DRAFT_4388 0.65 +0.2
51,645 + EX28DRAFT_4388 0.65 -0.0
51,646 - EX28DRAFT_4388 0.65 -0.1
51,797 - +1.4
51,808 + +0.5
51,839 + -0.4
51,839 + -0.0
51,921 + -0.0
51,921 + +0.1
51,943 + +0.0
51,944 - +0.0
51,944 - +0.9
51,944 - -0.4
51,946 + +0.0
51,947 - -0.3
51,972 + +0.6
51,986 - -0.3
52,069 + EX28DRAFT_4389 0.11 -0.1
52,087 - EX28DRAFT_4389 0.13 +0.3

Or see this region's nucleotide sequence