Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4386 and EX28DRAFT_4387 overlap by 4 nucleotides EX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotides EX28DRAFT_4388 and EX28DRAFT_4389 are separated by 152 nucleotides
EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468
_4386
EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163
_4387
EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820
_4388
EX28DRAFT_4389: EX28DRAFT_4389 - cation diffusion facilitator family transporter, at 51,973 to 52,866
_4389
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-1
0
1 at 50.275 kb on - strand, within EX28DRAFT_4386 at 50.398 kb on - strand at 50.667 kb on + strand, within EX28DRAFT_4387 at 50.667 kb on + strand, within EX28DRAFT_4387 at 50.668 kb on - strand, within EX28DRAFT_4387 at 50.767 kb on + strand, within EX28DRAFT_4387 at 50.768 kb on - strand, within EX28DRAFT_4387 at 50.980 kb on + strand, within EX28DRAFT_4387 at 50.981 kb on - strand, within EX28DRAFT_4387 at 51.157 kb on + strand at 51.168 kb on + strand at 51.168 kb on + strand at 51.168 kb on + strand at 51.169 kb on - strand at 51.209 kb on - strand at 51.222 kb on - strand at 51.231 kb on + strand at 51.231 kb on + strand at 51.232 kb on - strand at 51.265 kb on + strand at 51.265 kb on + strand at 51.266 kb on - strand at 51.385 kb on + strand, within EX28DRAFT_4388 at 51.408 kb on + strand, within EX28DRAFT_4388 at 51.409 kb on - strand, within EX28DRAFT_4388 at 51.445 kb on + strand, within EX28DRAFT_4388 at 51.445 kb on + strand, within EX28DRAFT_4388 at 51.446 kb on - strand, within EX28DRAFT_4388 at 51.446 kb on - strand, within EX28DRAFT_4388 at 51.460 kb on - strand, within EX28DRAFT_4388 at 51.645 kb on + strand, within EX28DRAFT_4388 at 51.645 kb on + strand, within EX28DRAFT_4388 at 51.646 kb on - strand, within EX28DRAFT_4388 at 51.797 kb on - strand at 51.808 kb on + strand at 51.839 kb on + strand at 51.839 kb on + strand at 51.921 kb on + strand at 51.921 kb on + strand at 51.943 kb on + strand at 51.944 kb on - strand at 51.944 kb on - strand at 51.944 kb on - strand at 51.946 kb on + strand at 51.947 kb on - strand at 51.972 kb on + strand at 51.986 kb on - strand at 52.069 kb on + strand, within EX28DRAFT_4389 at 52.087 kb on - strand, within EX28DRAFT_4389
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 50,275 - EX28DRAFT_4386 0.86 +0.3 50,398 - +0.6 50,667 + EX28DRAFT_4387 0.29 -0.8 50,667 + EX28DRAFT_4387 0.29 -0.7 50,668 - EX28DRAFT_4387 0.29 -0.6 50,767 + EX28DRAFT_4387 0.43 -1.4 50,768 - EX28DRAFT_4387 0.43 +0.3 50,980 + EX28DRAFT_4387 0.74 -1.2 50,981 - EX28DRAFT_4387 0.74 -1.7 51,157 + -0.4 51,168 + -0.4 51,168 + +0.1 51,168 + -0.3 51,169 - -0.3 51,209 - +0.2 51,222 - +0.2 51,231 + -0.1 51,231 + -0.2 51,232 - -0.1 51,265 + +0.0 51,265 + +1.0 51,266 - +0.5 51,385 + EX28DRAFT_4388 0.14 -0.1 51,408 + EX28DRAFT_4388 0.19 +0.0 51,409 - EX28DRAFT_4388 0.19 -0.1 51,445 + EX28DRAFT_4388 0.26 +0.0 51,445 + EX28DRAFT_4388 0.26 +0.2 51,446 - EX28DRAFT_4388 0.26 +0.1 51,446 - EX28DRAFT_4388 0.26 -0.1 51,460 - EX28DRAFT_4388 0.29 +1.4 51,645 + EX28DRAFT_4388 0.65 +0.2 51,645 + EX28DRAFT_4388 0.65 -0.0 51,646 - EX28DRAFT_4388 0.65 -0.1 51,797 - +1.4 51,808 + +0.5 51,839 + -0.4 51,839 + -0.0 51,921 + -0.0 51,921 + +0.1 51,943 + +0.0 51,944 - +0.0 51,944 - +0.9 51,944 - -0.4 51,946 + +0.0 51,947 - -0.3 51,972 + +0.6 51,986 - -0.3 52,069 + EX28DRAFT_4389 0.11 -0.1 52,087 - EX28DRAFT_4389 0.13 +0.3
Or see this region's nucleotide sequence