Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4385

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4383 and EX28DRAFT_4384 are separated by 203 nucleotidesEX28DRAFT_4384 and EX28DRAFT_4385 are separated by 71 nucleotidesEX28DRAFT_4385 and EX28DRAFT_4386 are separated by 102 nucleotides EX28DRAFT_4383: EX28DRAFT_4383 - transcriptional regulator, XRE family with cupin sensor, at 46,874 to 47,422 _4383 EX28DRAFT_4384: EX28DRAFT_4384 - Superoxide dismutase, at 47,626 to 48,246 _4384 EX28DRAFT_4385: EX28DRAFT_4385 - Uncharacterized protein conserved in bacteria, at 48,318 to 48,992 _4385 EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468 _4386 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.336 kb on + strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.337 kb on - strand, within EX28DRAFT_4383at 47.555 kb on - strandat 47.558 kb on + strandat 47.562 kb on + strandat 47.563 kb on - strandat 47.563 kb on - strandat 47.563 kb on - strandat 47.564 kb on + strandat 47.626 kb on - strandat 47.632 kb on + strandat 47.634 kb on + strandat 47.635 kb on - strandat 47.728 kb on + strand, within EX28DRAFT_4384at 47.844 kb on + strand, within EX28DRAFT_4384at 48.145 kb on + strand, within EX28DRAFT_4384at 48.148 kb on + strand, within EX28DRAFT_4384at 48.178 kb on + strand, within EX28DRAFT_4384at 48.179 kb on - strand, within EX28DRAFT_4384at 48.245 kb on - strandat 48.278 kb on + strandat 48.296 kb on + strandat 48.510 kb on + strand, within EX28DRAFT_4385at 48.614 kb on + strand, within EX28DRAFT_4385at 48.623 kb on + strand, within EX28DRAFT_4385at 48.627 kb on + strand, within EX28DRAFT_4385at 48.628 kb on - strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.753 kb on + strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.879 kb on + strand, within EX28DRAFT_4385at 48.946 kb on + strandat 48.965 kb on + strandat 49.079 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.109 kb on - strandat 49.259 kb on - strand, within EX28DRAFT_4386at 49.438 kb on + strand, within EX28DRAFT_4386at 49.439 kb on - strand, within EX28DRAFT_4386

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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47,336 + EX28DRAFT_4383 0.84 -0.5
47,337 - EX28DRAFT_4383 0.84 +0.1
47,337 - EX28DRAFT_4383 0.84 +1.4
47,337 - EX28DRAFT_4383 0.84 -0.3
47,555 - -0.6
47,558 + +0.1
47,562 + +2.2
47,563 - +0.1
47,563 - -0.0
47,563 - -0.3
47,564 + +0.2
47,626 - -0.2
47,632 + -0.5
47,634 + -0.0
47,635 - +0.1
47,728 + EX28DRAFT_4384 0.16 -0.6
47,844 + EX28DRAFT_4384 0.35 -0.7
48,145 + EX28DRAFT_4384 0.84 -0.1
48,148 + EX28DRAFT_4384 0.84 -0.0
48,178 + EX28DRAFT_4384 0.89 +0.3
48,179 - EX28DRAFT_4384 0.89 +0.0
48,245 - +0.8
48,278 + -0.2
48,296 + +0.2
48,510 + EX28DRAFT_4385 0.28 -0.1
48,614 + EX28DRAFT_4385 0.44 +0.2
48,623 + EX28DRAFT_4385 0.45 +0.1
48,627 + EX28DRAFT_4385 0.46 -0.1
48,628 - EX28DRAFT_4385 0.46 +0.1
48,690 + EX28DRAFT_4385 0.55 +0.5
48,690 + EX28DRAFT_4385 0.55 +0.2
48,690 + EX28DRAFT_4385 0.55 -1.0
48,710 + EX28DRAFT_4385 0.58 +0.4
48,710 + EX28DRAFT_4385 0.58 +0.5
48,711 - EX28DRAFT_4385 0.58 -0.3
48,711 - EX28DRAFT_4385 0.58 +0.8
48,753 + EX28DRAFT_4385 0.64 +1.0
48,858 - EX28DRAFT_4385 0.80 +0.7
48,858 - EX28DRAFT_4385 0.80 -0.0
48,879 + EX28DRAFT_4385 0.83 +0.1
48,946 + -0.5
48,965 + +0.0
49,079 + +0.6
49,108 + -0.3
49,108 + +0.1
49,108 + -0.0
49,108 + +0.3
49,108 + +0.8
49,109 - +1.1
49,259 - EX28DRAFT_4386 0.12 -0.0
49,438 + EX28DRAFT_4386 0.25 -1.0
49,439 - EX28DRAFT_4386 0.25 -2.0

Or see this region's nucleotide sequence